Wall clock time and date at job start Tue Mar 31 2020 13:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47451 * 2 1 4 4 C 1.53001 * 109.46978 * 120.00363 * 2 1 3 5 5 C 1.50700 * 109.47225 * 174.51819 * 4 2 1 6 6 C 1.37984 * 120.07171 * 271.35663 * 5 4 2 7 7 C 1.38332 * 120.14076 * 180.27830 * 6 5 4 8 8 C 1.38389 * 120.29614 * 359.69545 * 7 6 5 9 9 C 1.37931 * 120.14279 * 0.02562 * 8 7 6 10 10 C 1.39558 * 120.07463 * 91.05483 * 5 4 2 11 11 C 1.47847 * 120.14186 * 0.02600 * 10 5 4 12 12 O 1.21546 * 120.00355 * 52.39384 * 11 10 5 13 13 N 1.34781 * 119.99705 * 232.38766 * 11 10 5 14 14 C 1.47424 * 125.64895 * 355.28827 * 13 11 10 15 15 C 1.55383 * 104.87615 * 204.16555 * 14 13 11 16 16 C 1.55161 * 101.36301 * 323.01656 * 15 14 13 17 17 O 1.42900 * 110.72090 * 277.04066 * 16 15 14 18 18 C 1.50700 * 110.71862 * 153.94684 * 16 15 14 19 19 H 1.07999 * 120.00297 * 2.43845 * 18 16 15 20 20 C 1.37877 * 120.00133 * 182.44188 * 18 16 15 21 21 N 1.31519 * 119.99873 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00059 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47088 * 60.00433 * 22 20 18 24 24 H 1.48507 * 109.47075 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47526 * 299.99889 * 22 20 18 26 26 C 1.47019 * 125.64904 * 175.32740 * 13 11 10 27 27 H 1.08996 * 109.47242 * 300.00202 * 1 2 3 28 28 H 1.08999 * 109.46847 * 59.99613 * 1 2 3 29 29 H 1.08996 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47242 * 239.99798 * 2 1 3 31 31 H 1.09002 * 109.47017 * 65.73928 * 3 2 1 32 32 H 1.08997 * 109.47323 * 185.73876 * 3 2 1 33 33 H 1.08999 * 109.47393 * 305.73924 * 3 2 1 34 34 H 1.08993 * 109.47525 * 54.51251 * 4 2 1 35 35 H 1.09006 * 109.46909 * 294.51340 * 4 2 1 36 36 H 1.07987 * 119.92834 * 359.97438 * 6 5 4 37 37 H 1.08001 * 119.85622 * 179.71679 * 7 6 5 38 38 H 1.08005 * 119.92594 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.07271 * 179.97438 * 9 8 7 40 40 H 1.08999 * 110.36754 * 323.00268 * 14 13 11 41 41 H 1.09000 * 110.36719 * 85.21338 * 14 13 11 42 42 H 1.08999 * 111.19212 * 204.98482 * 15 14 13 43 43 H 1.08999 * 111.02275 * 80.97828 * 15 14 13 44 44 H 0.96696 * 113.99969 * 177.56305 * 17 16 15 45 45 H 0.96998 * 120.00049 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.88303 * 59.48471 * 26 13 11 47 47 H 1.09004 * 109.88330 * 298.32500 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5408 -0.8400 1.1833 6 6 4.1219 -1.9292 0.5668 7 6 5.4994 -2.0424 0.5105 8 6 6.3037 -1.0626 1.0656 9 6 5.7356 0.0341 1.6797 10 6 4.3462 0.1546 1.7400 11 6 3.7303 1.3273 2.3967 12 8 2.8933 1.1686 3.2636 13 7 4.0972 2.5725 2.0341 14 6 5.1638 2.9085 1.0735 15 6 5.6095 4.3463 1.4590 16 6 4.2557 4.9882 1.8623 17 8 3.5514 5.4502 0.7079 18 6 4.4701 6.1148 2.8399 19 1 5.4720 6.3952 3.1296 20 6 3.3871 6.7878 3.3646 21 7 2.1669 6.4468 3.0115 22 14 3.6528 8.1838 4.5770 23 1 4.4609 9.2509 3.9338 24 1 2.3383 8.7383 4.9893 25 1 4.3703 7.6719 5.7721 26 6 3.5006 3.8207 2.5317 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.7631 1.9257 0.9369 32 1 3.1252 1.4441 -0.1028 33 1 1.5953 1.9851 -0.8341 34 1 1.5987 -1.7167 1.2997 35 1 1.7590 -0.1539 2.1365 36 1 3.4999 -2.6972 0.1317 37 1 5.9493 -2.8991 0.0309 38 1 7.3786 -1.1568 1.0179 39 1 6.3644 0.7979 2.1130 40 1 5.9975 2.2136 1.1739 41 1 4.7764 2.8904 0.0548 42 1 6.0490 4.8644 0.6067 43 1 6.3001 4.3287 2.3022 44 1 2.6820 5.8263 0.9020 45 1 1.4050 6.9199 3.3809 46 1 3.6123 3.8791 3.6144 47 1 2.4448 3.8597 2.2633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844017018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:29 Heat of formation + Delta-G solvation = -87.668493 kcal Electronic energy + Delta-G solvation = -28257.772522 eV Core-core repulsion = 24597.051211 eV Total energy + Delta-G solvation = -3660.721311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.71970 -39.88599 -38.66009 -37.13656 -36.11836 -34.21656 -32.58504 -32.41864 -31.43086 -29.56034 -28.15978 -27.72325 -26.92036 -25.02423 -23.50910 -22.80729 -21.47644 -21.07247 -20.29067 -19.14577 -18.34202 -17.45681 -17.11101 -16.90476 -16.59047 -16.27480 -16.03038 -15.40224 -15.22176 -15.10390 -14.77305 -14.70596 -14.66932 -14.36670 -13.92802 -13.54912 -13.49353 -13.41588 -13.32675 -13.10578 -12.87064 -12.78594 -12.60655 -12.48924 -12.34174 -12.31656 -12.19991 -12.08727 -11.84612 -11.62822 -11.56646 -11.19466 -10.86367 -10.64645 -10.28743 -9.88890 -9.62051 -9.52455 -8.28409 -6.44372 0.09104 0.43551 1.40570 1.41308 1.49205 1.68993 2.09491 2.36464 2.81567 2.98230 3.50792 3.74543 3.76390 3.82105 3.99923 4.01818 4.06150 4.15828 4.24035 4.27184 4.35424 4.47135 4.52149 4.61712 4.67395 4.68329 4.72768 4.76127 4.82755 4.93186 4.98846 5.00489 5.03836 5.08469 5.09671 5.22055 5.25681 5.31141 5.35913 5.42034 5.44770 5.49579 5.55103 5.66319 5.72642 6.02728 6.03465 6.59372 6.66123 7.13614 7.26745 7.34445 8.77443 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.004319 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.985280 B = 6481.724125 C = 7273.960273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.097 4.097 5 C -0.047 4.047 6 C -0.122 4.122 7 C -0.092 4.092 8 C -0.123 4.123 9 C -0.102 4.102 10 C -0.140 4.140 11 C 0.569 3.431 12 O -0.591 6.591 13 N -0.604 5.604 14 C 0.103 3.897 15 C -0.112 4.112 16 C 0.237 3.763 17 O -0.586 6.586 18 C -0.560 4.560 19 H 0.067 0.933 20 C 0.027 3.973 21 N -0.916 5.916 22 Si 0.962 3.038 23 H -0.266 1.266 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.126 3.874 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.019 0.981 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.376 0.624 45 H 0.270 0.730 46 H 0.029 0.971 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.107 -16.987 -8.783 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.199 4.199 4 C -0.134 4.134 5 C -0.048 4.048 6 C -0.139 4.139 7 C -0.110 4.110 8 C -0.140 4.140 9 C -0.120 4.120 10 C -0.143 4.143 11 C 0.360 3.640 12 O -0.473 6.473 13 N -0.335 5.335 14 C -0.019 4.019 15 C -0.150 4.150 16 C 0.196 3.804 17 O -0.395 6.395 18 C -0.598 4.598 19 H 0.086 0.914 20 C -0.174 4.174 21 N -0.555 5.555 22 Si 0.787 3.213 23 H -0.191 1.191 24 H -0.210 1.210 25 H -0.199 1.199 26 C 0.002 3.998 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.171 0.829 37 H 0.180 0.820 38 H 0.176 0.824 39 H 0.149 0.851 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.999 -17.279 -8.591 20.208 hybrid contribution -1.081 1.680 1.547 2.527 sum 4.917 -15.599 -7.044 17.808 Atomic orbital electron populations 1.21815 0.94271 1.02614 1.01345 1.21043 0.96281 0.94803 0.97679 1.21901 1.00775 0.97073 1.00156 1.20945 0.91170 1.02253 0.99057 1.19982 0.95531 0.93377 0.95915 1.21284 0.96102 0.97113 0.99439 1.21723 0.93029 0.99172 0.97072 1.21426 1.01730 0.93120 0.97759 1.21448 0.92235 0.99543 0.98787 1.19728 0.95282 0.95294 1.04006 1.18554 0.81203 0.82685 0.81529 1.90682 1.36260 1.86118 1.34256 1.48696 1.36686 1.04957 1.43160 1.22665 0.89957 0.97048 0.92210 1.22841 0.96281 0.93679 1.02160 1.19656 0.88318 0.89092 0.83315 1.86081 1.35779 1.82391 1.35221 1.21843 0.93735 1.17654 1.26584 0.91443 1.25800 0.94791 0.99243 0.97543 1.69747 0.98605 1.42159 1.45036 0.85543 0.77403 0.79267 0.79051 1.19131 1.20972 1.19887 1.22472 0.96492 0.83737 0.97053 0.94783 0.91826 0.90521 0.89151 0.96207 0.93180 0.92570 0.88647 0.92491 0.82913 0.82016 0.82389 0.85142 0.87896 0.91531 0.89086 0.89694 0.77466 0.92075 0.95283 0.95185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.19 71.98 0.66 -2.77 16 2 C -0.08 -2.11 2.90 -10.79 -0.03 -2.14 16 3 C -0.14 -4.79 7.45 71.98 0.54 -4.25 16 4 C -0.10 -2.77 4.59 29.85 0.14 -2.63 16 5 C -0.05 -1.29 4.72 -19.61 -0.09 -1.38 16 6 C -0.12 -2.32 9.70 22.23 0.22 -2.10 16 7 C -0.09 -1.42 10.04 22.33 0.22 -1.19 16 8 C -0.12 -2.14 10.03 22.23 0.22 -1.92 16 9 C -0.10 -2.54 8.14 22.52 0.18 -2.35 16 10 C -0.14 -4.47 4.42 -20.09 -0.09 -4.55 16 11 C 0.57 23.66 4.14 86.79 0.36 24.02 16 12 O -0.59 -29.51 15.30 -3.86 -0.06 -29.56 16 13 N -0.60 -25.33 2.67 -814.26 -2.17 -27.50 16 14 C 0.10 3.55 6.22 87.02 0.54 4.09 16 15 C -0.11 -4.32 6.26 32.15 0.20 -4.12 16 16 C 0.24 11.58 0.85 -10.35 -0.01 11.57 16 17 O -0.59 -30.03 13.07 -148.98 -1.95 -31.98 16 18 C -0.56 -29.69 8.11 25.60 0.21 -29.48 16 19 H 0.07 3.46 7.77 -2.91 -0.02 3.44 16 20 C 0.03 1.44 5.27 84.65 0.45 1.88 16 21 N -0.92 -50.56 10.96 21.45 0.24 -50.33 16 22 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.13 6.38 5.38 86.73 0.47 6.85 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.02 0.81 7.04 -2.39 -0.02 0.79 16 32 H 0.05 1.71 5.16 -2.39 -0.01 1.69 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 2.15 8.09 -2.39 -0.02 2.14 16 35 H 0.06 2.14 5.58 -2.38 -0.01 2.13 16 36 H 0.15 2.01 8.06 -2.92 -0.02 1.99 16 37 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.13 3.10 6.57 -2.91 -0.02 3.08 16 40 H 0.10 2.81 4.92 -2.39 -0.01 2.79 16 41 H 0.07 2.29 7.50 -2.39 -0.02 2.27 16 42 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 43 H 0.08 3.11 8.04 -2.39 -0.02 3.09 16 44 H 0.38 20.25 7.23 -74.06 -0.54 19.72 16 45 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 46 H 0.03 1.64 7.81 -2.39 -0.02 1.62 16 47 H 0.03 1.70 8.00 -2.39 -0.02 1.68 16 Total: -1.00 -68.00 365.33 2.70 -65.30 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.44 Total: 40.00 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.18 Total: -10.49 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -1.94 Total: -77.83 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -2.01 Total: -61.54 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -68.00 2.70 -65.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844017018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.373 kcal (2) G-P(sol) polarization free energy of solvation -67.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds