Wall clock time and date at job start Tue Mar 31 2020 13:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47667 * 2 1 4 4 C 1.53001 * 109.46838 * 240.00169 * 2 1 3 5 5 C 1.53006 * 109.47444 * 120.00363 * 2 1 3 6 6 C 1.53001 * 109.47112 * 59.99752 * 5 2 1 7 7 H 1.09001 * 115.56036 * 29.30740 * 6 5 2 8 8 C 1.52996 * 117.49880 * 243.62749 * 6 5 2 9 9 C 1.52995 * 117.50064 * 175.00430 * 6 5 2 10 10 H 1.09003 * 117.51698 * 0.02562 * 9 6 5 11 11 N 1.46499 * 117.49606 * 214.97752 * 9 6 5 12 12 C 1.34783 * 119.99806 * 154.98318 * 11 9 6 13 13 O 1.21591 * 119.99922 * 0.02562 * 12 11 9 14 14 C 1.47537 * 120.00122 * 179.97438 * 12 11 9 15 15 C 1.39666 * 120.19536 * 0.25407 * 14 12 11 16 16 C 1.37825 * 119.91846 * 180.29503 * 15 14 12 17 17 C 1.38581 * 120.32220 * 359.72840 * 16 15 14 18 18 C 1.38023 * 120.40188 * 359.97370 * 17 16 15 19 19 C 1.38835 * 120.07221 * 0.04649 * 18 17 16 20 20 O 1.35522 * 120.16353 * 179.97438 * 19 18 17 21 21 C 1.34809 * 116.99784 * 354.40056 * 20 19 18 22 22 H 1.08003 * 120.00021 * 5.06340 * 21 20 19 23 23 C 1.38701 * 120.00303 * 185.05926 * 21 20 19 24 24 N 1.31520 * 119.99415 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00338 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46943 * 90.00428 * 25 23 21 27 27 H 1.48495 * 109.46926 * 210.00050 * 25 23 21 28 28 H 1.48496 * 109.47249 * 330.00134 * 25 23 21 29 29 H 1.09009 * 109.46908 * 299.99774 * 1 2 3 30 30 H 1.08997 * 109.47553 * 59.99516 * 1 2 3 31 31 H 1.08996 * 109.47563 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47488 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47030 * 300.00805 * 3 2 1 34 34 H 1.09009 * 109.46772 * 60.00143 * 3 2 1 35 35 H 1.08999 * 109.47575 * 299.99787 * 4 2 1 36 36 H 1.09001 * 109.47108 * 60.00256 * 4 2 1 37 37 H 1.09006 * 109.47100 * 179.97438 * 4 2 1 38 38 H 1.08996 * 109.46693 * 299.99788 * 5 2 1 39 39 H 1.09001 * 109.47033 * 179.97438 * 5 2 1 40 40 H 1.08995 * 117.50255 * 145.01846 * 8 6 5 41 41 H 1.09001 * 117.50077 * 359.97438 * 8 6 5 42 42 H 0.96991 * 120.00288 * 334.98676 * 11 9 6 43 43 H 1.08003 * 120.04146 * 359.97438 * 15 14 12 44 44 H 1.08002 * 119.84454 * 179.74402 * 16 15 14 45 45 H 1.08001 * 119.79894 * 179.97438 * 17 16 15 46 46 H 1.07995 * 119.96411 * 180.02562 * 18 17 16 47 47 H 0.97000 * 119.99592 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2492 7 1 1.3620 -2.6032 0.2659 8 6 0.5860 -2.5794 2.3792 9 6 2.0284 -3.0894 2.3608 10 1 2.7193 -2.6709 3.0926 11 7 2.2433 -4.4984 2.0222 12 6 3.1166 -5.2372 2.7351 13 8 3.7255 -4.7343 3.6596 14 6 3.3326 -6.6564 2.3945 15 6 2.6385 -7.2370 1.3308 16 6 2.8402 -8.5649 1.0214 17 6 3.7335 -9.3269 1.7575 18 6 4.4311 -8.7650 2.8075 19 6 4.2404 -7.4290 3.1338 20 8 4.9240 -6.8756 4.1648 21 6 5.6869 -7.7026 4.9073 22 1 5.7977 -8.7380 4.6207 23 6 6.3296 -7.2239 6.0394 24 7 6.1942 -5.9631 6.3887 25 14 7.3872 -8.3696 7.0679 26 1 8.7841 -8.3384 6.5651 27 1 7.3615 -7.9279 8.4854 28 1 6.8570 -9.7533 6.9709 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6765 -0.2073 -2.1392 37 1 3.1299 -0.7209 -1.2496 38 1 1.6767 -0.2075 2.1392 39 1 3.1300 -0.7217 1.2489 40 1 -0.2029 -3.2922 2.1395 41 1 0.3287 -1.8253 3.1230 42 1 1.7573 -4.8996 1.2849 43 1 1.9406 -6.6476 0.7546 44 1 2.2997 -9.0137 0.2011 45 1 3.8847 -10.3667 1.5079 46 1 5.1258 -9.3652 3.3762 47 1 6.6433 -5.6284 7.1806 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844783376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:30 Heat of formation + Delta-G solvation = -48.235124 kcal Electronic energy + Delta-G solvation = -26176.555135 eV Core-core repulsion = 22517.543783 eV Total energy + Delta-G solvation = -3659.011352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33374 -40.23939 -39.21009 -38.02918 -37.07558 -34.35599 -34.00559 -31.73317 -30.57390 -28.34369 -28.08773 -28.01434 -27.37566 -25.04633 -23.42962 -22.55926 -21.91428 -21.52422 -19.85727 -19.54810 -19.15525 -17.86247 -17.48316 -16.40392 -16.14828 -16.01659 -15.91205 -15.52482 -15.45315 -15.28765 -15.19609 -15.10855 -14.50712 -14.24657 -14.14149 -13.98230 -13.55349 -13.20642 -13.09558 -13.01710 -12.69787 -12.59864 -12.55158 -12.52534 -12.42488 -12.34562 -12.21625 -12.12940 -11.60382 -11.45340 -11.42369 -11.32452 -10.96768 -10.83823 -10.59138 -9.90883 -9.53646 -9.03471 -8.44953 -6.16103 0.11228 0.72242 1.31742 1.43472 1.51081 2.03882 2.15081 2.17870 2.83294 2.97197 3.23718 3.46104 3.66453 3.79634 3.92451 3.95662 4.05932 4.09207 4.14878 4.24644 4.28810 4.44572 4.51878 4.60224 4.71602 4.75392 4.81632 4.86949 4.93114 4.97504 4.98952 5.00606 5.03953 5.07603 5.13455 5.13924 5.17261 5.28518 5.35157 5.45137 5.47524 5.57062 5.58242 5.60224 5.66249 5.69116 5.95808 6.16603 6.69218 6.94197 7.48680 7.80122 8.75643 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015120 B = 0.002988 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.354079 B = 9370.028618 C =10698.048374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.082 4.082 6 C -0.127 4.127 7 H 0.127 0.873 8 C -0.171 4.171 9 C 0.050 3.950 10 H 0.094 0.906 11 N -0.688 5.688 12 C 0.549 3.451 13 O -0.570 6.570 14 C -0.245 4.245 15 C -0.030 4.030 16 C -0.200 4.200 17 C -0.040 4.040 18 C -0.258 4.258 19 C 0.148 3.852 20 O -0.189 6.189 21 C -0.428 4.428 22 H 0.107 0.893 23 C -0.023 4.023 24 N -0.905 5.905 25 Si 1.023 2.977 26 H -0.261 1.261 27 H -0.273 1.273 28 H -0.247 1.247 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.412 0.588 43 H 0.160 0.840 44 H 0.165 0.835 45 H 0.155 0.845 46 H 0.123 0.877 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.277 5.256 -16.791 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.119 4.119 6 C -0.146 4.146 7 H 0.144 0.856 8 C -0.209 4.209 9 C -0.056 4.056 10 H 0.112 0.888 11 N -0.340 5.340 12 C 0.340 3.660 13 O -0.449 6.449 14 C -0.250 4.250 15 C -0.048 4.048 16 C -0.218 4.218 17 C -0.058 4.058 18 C -0.277 4.277 19 C 0.093 3.907 20 O -0.092 6.092 21 C -0.504 4.504 22 H 0.124 0.876 23 C -0.222 4.222 24 N -0.541 5.541 25 Si 0.841 3.159 26 H -0.186 1.186 27 H -0.197 1.197 28 H -0.171 1.171 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.250 0.750 43 H 0.177 0.823 44 H 0.183 0.817 45 H 0.172 0.828 46 H 0.141 0.859 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.746 6.006 -15.865 21.219 hybrid contribution 0.765 -0.368 0.805 1.170 sum -11.981 5.638 -15.060 20.053 Atomic orbital electron populations 1.21842 0.93557 1.02269 1.01724 1.20489 0.96429 0.95142 0.94276 1.21879 1.00691 0.95272 1.02132 1.21949 1.00557 1.00627 0.96983 1.21287 0.99717 0.92313 0.98599 1.22942 1.01554 0.95321 0.94818 0.85573 1.23672 0.92528 1.03389 1.01307 1.21617 0.99059 0.81812 1.03116 0.88837 1.44981 1.43858 1.09810 1.35383 1.18557 0.79045 0.86758 0.81649 1.90919 1.49258 1.73517 1.31185 1.19277 1.06983 0.93663 1.05033 1.21297 0.95310 0.95965 0.92216 1.21184 1.03111 0.93734 1.03802 1.21446 0.92323 1.00630 0.91373 1.21305 1.07759 0.94431 1.04207 1.20097 0.89720 0.92733 0.88129 1.84181 1.52149 1.36610 1.36224 1.22047 1.26872 0.94204 1.07269 0.87556 1.26777 0.99139 0.98579 0.97699 1.70331 1.42073 1.16238 1.25482 0.84556 0.77493 0.77415 0.76452 1.18625 1.19737 1.17070 0.92849 0.92221 0.92059 0.93328 0.91708 0.92642 0.92050 0.91828 0.93616 0.91582 0.92955 0.86995 0.87778 0.74977 0.82257 0.81728 0.82783 0.85890 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.23 71.98 0.59 -1.18 16 2 C -0.06 -0.97 0.80 -52.18 -0.04 -1.01 16 3 C -0.14 -2.08 8.47 71.98 0.61 -1.47 16 4 C -0.14 -2.13 8.23 71.98 0.59 -1.54 16 5 C -0.08 -1.61 4.55 30.60 0.14 -1.47 16 6 C -0.13 -2.59 4.18 -10.80 -0.05 -2.64 16 7 H 0.13 2.13 6.06 -2.39 -0.01 2.12 16 8 C -0.17 -3.62 10.10 30.59 0.31 -3.31 16 9 C 0.05 1.52 6.15 44.99 0.28 1.80 16 10 H 0.09 3.65 7.40 -2.39 -0.02 3.63 16 11 N -0.69 -22.47 5.52 -445.70 -2.46 -24.93 16 12 C 0.55 25.64 7.76 86.69 0.67 26.31 16 13 O -0.57 -34.59 14.73 16.89 0.25 -34.34 16 14 C -0.24 -10.79 5.89 -19.99 -0.12 -10.91 16 15 C -0.03 -0.89 9.53 22.52 0.21 -0.68 16 16 C -0.20 -5.32 10.03 22.25 0.22 -5.09 16 17 C -0.04 -1.23 10.03 22.30 0.22 -1.01 16 18 C -0.26 -11.12 9.16 22.36 0.20 -10.91 16 19 C 0.15 7.76 6.66 22.91 0.15 7.92 16 20 O -0.19 -12.23 7.84 0.87 0.01 -12.22 16 21 C -0.43 -26.23 9.49 67.93 0.64 -25.58 16 22 H 0.11 5.83 5.21 -2.91 -0.02 5.81 16 23 C -0.02 -1.37 5.49 84.85 0.47 -0.90 16 24 N -0.91 -59.97 13.67 21.62 0.30 -59.67 16 25 Si 1.02 44.70 29.55 68.60 2.03 46.73 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 29 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.77 7.20 -2.39 -0.02 0.76 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.06 0.86 6.14 -2.39 -0.01 0.85 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.07 1.30 7.87 -2.39 -0.02 1.28 16 39 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.10 2.11 8.03 -2.39 -0.02 2.09 16 42 H 0.41 9.66 6.86 -92.72 -0.64 9.02 16 43 H 0.16 3.20 6.40 -2.91 -0.02 3.18 16 44 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 45 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 46 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 47 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 Total: -1.00 -87.44 381.90 5.58 -81.86 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.34 Total: 34.25 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 5.12 Total: -31.68 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -2.16 Total: -84.60 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: 0.26 Total: -46.56 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -87.44 5.58 -81.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844783376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.622 kcal (2) G-P(sol) polarization free energy of solvation -87.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds