Wall clock time and date at job start Tue Mar 31 2020 13:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47286 * 41.71549 * 3 2 1 5 5 C 1.53006 * 109.47005 * 161.71788 * 3 2 1 6 6 C 1.53004 * 109.46857 * 299.99504 * 5 3 2 7 7 N 1.46901 * 109.47481 * 281.71387 * 3 2 1 8 8 C 1.46904 * 110.99701 * 59.99820 * 7 3 2 9 9 C 1.53004 * 109.46884 * 180.02562 * 8 7 3 10 10 H 1.09001 * 109.46875 * 60.00639 * 9 8 7 11 11 O 1.42901 * 109.47269 * 300.00495 * 9 8 7 12 12 C 1.52995 * 109.47037 * 180.02562 * 9 8 7 13 13 O 1.42899 * 109.47311 * 185.00142 * 12 9 8 14 14 C 1.35678 * 117.00308 * 179.97438 * 13 12 9 15 15 C 1.39314 * 119.81432 * 359.72563 * 14 13 12 16 16 C 1.36441 * 120.18119 * 179.75794 * 15 14 13 17 17 C 1.40828 * 119.81137 * 0.51499 * 16 15 14 18 18 C 1.41214 * 120.17684 * 179.71629 * 17 16 15 19 19 H 1.07998 * 120.00043 * 24.57522 * 18 17 16 20 20 C 1.39899 * 119.99914 * 204.56949 * 18 17 16 21 21 N 1.30880 * 119.99676 * 17.93743 * 20 18 17 22 22 Si 1.86800 * 120.00102 * 197.93416 * 20 18 17 23 23 H 1.48503 * 109.46923 * 90.00183 * 22 20 18 24 24 H 1.48495 * 109.47089 * 210.00156 * 22 20 18 25 25 H 1.48501 * 109.47108 * 330.00435 * 22 20 18 26 26 C 1.40838 * 119.64409 * 359.74357 * 17 16 15 27 27 C 1.36433 * 119.80766 * 359.97438 * 26 17 16 28 28 H 4.44640 * 5.63306 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.46968 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47300 * 299.99244 * 4 3 2 31 31 H 1.08995 * 109.47211 * 60.00314 * 4 3 2 32 32 H 1.09002 * 109.47076 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47208 * 59.99705 * 5 3 2 34 34 H 1.09005 * 109.46678 * 59.99905 * 6 5 3 35 35 H 1.08997 * 109.47013 * 179.97438 * 6 5 3 36 36 H 1.09003 * 109.47219 * 300.00518 * 6 5 3 37 37 H 1.00909 * 110.99578 * 296.05120 * 7 3 2 38 38 H 1.08998 * 109.47445 * 300.00293 * 8 7 3 39 39 H 1.09001 * 109.46843 * 60.00715 * 8 7 3 40 40 H 0.96699 * 114.00018 * 299.99934 * 11 9 8 41 41 H 1.09001 * 109.47329 * 305.00209 * 12 9 8 42 42 H 1.09004 * 109.46954 * 65.00017 * 12 9 8 43 43 H 1.07999 * 119.90898 * 0.02562 * 15 14 13 44 44 H 1.08002 * 120.09017 * 180.25146 * 16 15 14 45 45 H 0.96999 * 119.99676 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.09626 * 179.97438 * 26 17 16 47 47 H 1.08007 * 119.90776 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -1.0759 -0.9599 5 6 3.1553 1.3706 -0.4525 6 6 2.6452 1.6633 -1.8650 7 7 3.1358 -0.2803 1.3561 8 6 2.6653 -1.5907 1.8248 9 6 3.1941 -1.8469 3.2375 10 1 2.8298 -1.0689 3.9084 11 8 4.6229 -1.8316 3.2215 12 6 2.7047 -3.2119 3.7254 13 8 3.1000 -3.4015 5.0855 14 6 2.7416 -4.5702 5.6740 15 6 2.0155 -5.5151 4.9523 16 6 1.6554 -6.6950 5.5351 17 6 2.0103 -6.9517 6.8736 18 6 1.6363 -8.1678 7.4864 19 1 1.4471 -9.0418 6.8808 20 6 1.5111 -8.2404 8.8779 21 7 1.3904 -7.1438 9.5821 22 14 1.5162 -9.9023 9.7307 23 1 2.9099 -10.2722 10.0857 24 1 0.6942 -9.8277 10.9651 25 1 0.9486 -10.9281 8.8192 26 6 2.7396 -5.9889 7.5978 27 6 3.0969 -4.8166 6.9983 28 1 -1.0498 -0.0001 -0.0003 29 1 4.2465 -1.0750 -0.9602 30 1 2.7937 -2.0518 -0.6374 31 1 2.7931 -0.8674 -1.9661 32 1 4.2453 1.3710 -0.4530 33 1 2.7916 2.1375 0.2313 34 1 1.5552 1.6627 -1.8650 35 1 3.0077 2.6394 -2.1873 36 1 3.0089 0.8962 -2.5489 37 1 2.8660 0.4511 1.9968 38 1 1.5755 -1.6022 1.8375 39 1 3.0292 -2.3686 1.1536 40 1 5.0170 -2.4995 2.6438 41 1 1.6179 -3.2552 3.6536 42 1 3.1412 -3.9966 3.1074 43 1 1.7407 -5.3149 3.9272 44 1 1.0960 -7.4282 4.9730 45 1 1.3032 -7.1941 10.5468 46 1 3.0153 -6.1780 8.6248 47 1 3.6559 -4.0769 7.5523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852098780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:45 Heat of formation + Delta-G solvation = -20.763823 kcal Electronic energy + Delta-G solvation = -25455.605298 eV Core-core repulsion = 21797.785191 eV Total energy + Delta-G solvation = -3657.820107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.43160 -38.74349 -37.22797 -35.98305 -33.41369 -33.30944 -32.25595 -30.50747 -29.61847 -29.06120 -28.67905 -26.17818 -24.72818 -23.58457 -21.93994 -21.79557 -20.68276 -20.56730 -18.04079 -17.35357 -17.21643 -16.68372 -16.13357 -15.98963 -15.53191 -15.19474 -14.84301 -14.57856 -14.22735 -13.95411 -13.90063 -13.53815 -13.01892 -12.86635 -12.80876 -12.45336 -12.29149 -12.21431 -12.13649 -11.88117 -11.75403 -11.39065 -11.37172 -11.16777 -11.14832 -10.93110 -10.77076 -10.73792 -10.60865 -10.40649 -9.99394 -9.87998 -9.81995 -9.32884 -9.02422 -8.92477 -7.64191 -7.03045 -6.72116 -4.25397 2.46166 2.51815 2.77956 2.95225 3.08726 3.11981 3.21696 3.52325 3.92451 3.95343 4.20658 4.46751 4.54537 4.61364 4.62393 4.91446 4.94283 4.99937 5.11741 5.21229 5.25948 5.28413 5.32667 5.48053 5.59463 5.62459 5.63632 5.65928 5.67264 5.69114 5.91646 5.94872 6.03132 6.06257 6.23078 6.61348 6.73459 6.97656 6.99413 7.11392 7.18846 7.29002 7.46640 7.55910 7.76809 7.79538 8.00816 8.20709 8.45590 8.65633 8.90074 8.98968 10.22341 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.002006 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.252745 B =13952.610013 C =14261.130071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.210 4.210 3 C 0.220 3.780 4 C -0.140 4.140 5 C -0.107 4.107 6 C -0.153 4.153 7 N -0.657 5.657 8 C 0.025 3.975 9 C 0.116 3.884 10 H 0.102 0.898 11 O -0.539 6.539 12 C 0.039 3.961 13 O -0.317 6.317 14 C -0.009 4.009 15 C -0.168 4.168 16 C -0.198 4.198 17 C 0.087 3.913 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.074 3.926 21 N -0.799 5.799 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.133 4.133 27 C -0.119 4.119 28 H 0.215 0.785 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.346 0.654 38 H 0.045 0.955 39 H 0.083 0.917 40 H 0.371 0.629 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.280 0.720 46 H 0.126 0.874 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 13.402 -18.061 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.212 4.212 3 C 0.129 3.871 4 C -0.197 4.197 5 C -0.145 4.145 6 C -0.211 4.211 7 N -0.286 5.286 8 C -0.104 4.104 9 C 0.056 3.944 10 H 0.120 0.880 11 O -0.343 6.343 12 C -0.038 4.038 13 O -0.233 6.233 14 C -0.052 4.052 15 C -0.187 4.187 16 C -0.218 4.218 17 C 0.085 3.915 18 C -0.494 4.494 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.425 5.425 22 Si 0.733 3.267 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.153 4.153 27 C -0.138 4.138 28 H 0.232 0.768 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.165 0.835 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.217 0.783 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.144 0.856 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.954 13.877 -17.505 22.423 hybrid contribution -1.620 -1.184 0.103 2.010 sum 0.334 12.693 -17.401 21.541 Atomic orbital electron populations 1.25070 0.96053 1.00752 0.99699 1.24311 0.95490 1.00337 1.01052 1.18221 0.81396 0.96885 0.90628 1.21948 1.02200 0.97453 0.98126 1.21514 1.01772 0.94117 0.97057 1.21845 1.01391 1.01613 0.96267 1.60751 1.61555 1.04077 1.02204 1.22662 0.98478 0.92592 0.96712 1.21828 0.82095 0.96373 0.94149 0.87996 1.86626 1.17766 1.60000 1.69937 1.23088 0.99300 0.96886 0.84543 1.85886 1.76017 1.36942 1.24417 1.18624 1.06310 0.86606 0.93653 1.20393 1.03907 0.96285 0.98131 1.20552 1.06953 0.97043 0.97278 1.17602 0.89831 0.93171 0.90884 1.19463 1.41613 0.96839 0.91442 0.90553 1.25885 0.92365 0.98086 0.97901 1.69836 1.35294 1.29175 1.08169 0.86319 0.79112 0.82465 0.78836 1.19308 1.20395 1.18735 1.20987 1.00101 0.93617 1.00564 1.19846 1.03647 0.98466 0.91818 0.76836 0.90655 0.92232 0.91618 0.89951 0.91732 0.92691 0.92390 0.92154 0.83502 0.93678 0.89886 0.78251 0.92642 0.92883 0.89005 0.88786 0.90918 0.85642 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.21 -1.98 9.27 -37.12 -0.34 -2.33 16 3 C 0.22 1.86 0.69 -134.39 -0.09 1.76 16 4 C -0.14 -1.08 7.84 37.16 0.29 -0.79 16 5 C -0.11 -0.77 5.23 -26.73 -0.14 -0.91 16 6 C -0.15 -0.98 9.31 37.16 0.35 -0.63 16 7 N -0.66 -6.19 5.94 -102.82 -0.61 -6.80 16 8 C 0.03 0.25 4.65 -3.82 -0.02 0.24 16 9 C 0.12 1.47 3.46 -26.73 -0.09 1.38 16 10 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 11 O -0.54 -7.38 13.17 -40.11 -0.53 -7.91 16 12 C 0.04 0.61 4.36 37.15 0.16 0.77 16 13 O -0.32 -6.59 10.09 -23.61 -0.24 -6.83 16 14 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 15 C -0.17 -3.84 8.96 -39.83 -0.36 -4.19 16 16 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 17 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 18 C -0.46 -12.38 9.04 -37.83 -0.34 -12.72 16 19 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.82 10.96 55.55 0.61 -20.21 16 22 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 26 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 27 C -0.12 -2.94 9.92 -39.83 -0.40 -3.33 16 28 H 0.21 1.28 7.80 -54.10 -0.42 0.86 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 6.40 -51.93 -0.33 0.16 16 31 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.39 7.23 -51.93 -0.38 0.02 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 37 H 0.35 3.26 8.71 -39.29 -0.34 2.92 16 38 H 0.05 0.48 7.10 -51.93 -0.37 0.11 16 39 H 0.08 0.79 6.30 -51.93 -0.33 0.46 16 40 H 0.37 3.92 9.04 45.56 0.41 4.34 16 41 H 0.06 0.84 7.63 -51.93 -0.40 0.45 16 42 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 43 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 46 H 0.13 3.39 6.16 -52.49 -0.32 3.06 16 47 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -30.08 385.06 -8.45 -38.53 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.38 Total: 11.66 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -2.08 Total: -28.00 kcal Atomic # 7 Polarization: -27.01 SS G_CDS: 0.00 Total: -27.01 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.77 Total: -14.74 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.08 -8.45 -38.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852098780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.768 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds