Wall clock time and date at job start Tue Mar 31 2020 13:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47286 * 41.71549 * 3 2 1 5 5 C 1.53006 * 109.47005 * 161.71788 * 3 2 1 6 6 C 1.53004 * 109.46857 * 299.99504 * 5 3 2 7 7 N 1.46901 * 109.47481 * 281.71387 * 3 2 1 8 8 C 1.46904 * 110.99701 * 59.99820 * 7 3 2 9 9 C 1.53004 * 109.46884 * 180.02562 * 8 7 3 10 10 H 1.09001 * 109.46875 * 60.00639 * 9 8 7 11 11 O 1.42901 * 109.47269 * 300.00495 * 9 8 7 12 12 C 1.52995 * 109.47037 * 180.02562 * 9 8 7 13 13 O 1.42899 * 109.47311 * 185.00142 * 12 9 8 14 14 C 1.35678 * 117.00308 * 179.97438 * 13 12 9 15 15 C 1.39314 * 119.81432 * 359.72563 * 14 13 12 16 16 C 1.36441 * 120.18119 * 179.75794 * 15 14 13 17 17 C 1.40828 * 119.81137 * 0.51499 * 16 15 14 18 18 C 1.41214 * 120.17684 * 179.71629 * 17 16 15 19 19 H 1.07998 * 120.00043 * 24.57522 * 18 17 16 20 20 C 1.39899 * 119.99914 * 204.56949 * 18 17 16 21 21 N 1.30880 * 119.99676 * 17.93743 * 20 18 17 22 22 Si 1.86800 * 120.00102 * 197.93416 * 20 18 17 23 23 H 1.48503 * 109.46923 * 90.00183 * 22 20 18 24 24 H 1.48495 * 109.47089 * 210.00156 * 22 20 18 25 25 H 1.48501 * 109.47108 * 330.00435 * 22 20 18 26 26 C 1.40838 * 119.64409 * 359.74357 * 17 16 15 27 27 C 1.36433 * 119.80766 * 359.97438 * 26 17 16 28 28 H 4.44640 * 5.63306 * 180.02562 * 4 1 2 29 29 H 1.09005 * 109.46968 * 179.97438 * 4 3 2 30 30 H 1.08999 * 109.47300 * 299.99244 * 4 3 2 31 31 H 1.08995 * 109.47211 * 60.00314 * 4 3 2 32 32 H 1.09002 * 109.47076 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47208 * 59.99705 * 5 3 2 34 34 H 1.09005 * 109.46678 * 59.99905 * 6 5 3 35 35 H 1.08997 * 109.47013 * 179.97438 * 6 5 3 36 36 H 1.09003 * 109.47219 * 300.00518 * 6 5 3 37 37 H 1.00909 * 110.99578 * 296.05120 * 7 3 2 38 38 H 1.08998 * 109.47445 * 300.00293 * 8 7 3 39 39 H 1.09001 * 109.46843 * 60.00715 * 8 7 3 40 40 H 0.96699 * 114.00018 * 299.99934 * 11 9 8 41 41 H 1.09001 * 109.47329 * 305.00209 * 12 9 8 42 42 H 1.09004 * 109.46954 * 65.00017 * 12 9 8 43 43 H 1.07999 * 119.90898 * 0.02562 * 15 14 13 44 44 H 1.08002 * 120.09017 * 180.25146 * 16 15 14 45 45 H 0.96999 * 119.99676 * 179.97438 * 21 20 18 46 46 H 1.07998 * 120.09626 * 179.97438 * 26 17 16 47 47 H 1.08007 * 119.90776 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1564 -1.0759 -0.9599 5 6 3.1553 1.3706 -0.4525 6 6 2.6452 1.6633 -1.8650 7 7 3.1358 -0.2803 1.3561 8 6 2.6653 -1.5907 1.8248 9 6 3.1941 -1.8469 3.2375 10 1 2.8298 -1.0689 3.9084 11 8 4.6229 -1.8316 3.2215 12 6 2.7047 -3.2119 3.7254 13 8 3.1000 -3.4015 5.0855 14 6 2.7416 -4.5702 5.6740 15 6 2.0155 -5.5151 4.9523 16 6 1.6554 -6.6950 5.5351 17 6 2.0103 -6.9517 6.8736 18 6 1.6363 -8.1678 7.4864 19 1 1.4471 -9.0418 6.8808 20 6 1.5111 -8.2404 8.8779 21 7 1.3904 -7.1438 9.5821 22 14 1.5162 -9.9023 9.7307 23 1 2.9099 -10.2722 10.0857 24 1 0.6942 -9.8277 10.9651 25 1 0.9486 -10.9281 8.8192 26 6 2.7396 -5.9889 7.5978 27 6 3.0969 -4.8166 6.9983 28 1 -1.0498 -0.0001 -0.0003 29 1 4.2465 -1.0750 -0.9602 30 1 2.7937 -2.0518 -0.6374 31 1 2.7931 -0.8674 -1.9661 32 1 4.2453 1.3710 -0.4530 33 1 2.7916 2.1375 0.2313 34 1 1.5552 1.6627 -1.8650 35 1 3.0077 2.6394 -2.1873 36 1 3.0089 0.8962 -2.5489 37 1 2.8660 0.4511 1.9968 38 1 1.5755 -1.6022 1.8375 39 1 3.0292 -2.3686 1.1536 40 1 5.0170 -2.4995 2.6438 41 1 1.6179 -3.2552 3.6536 42 1 3.1412 -3.9966 3.1074 43 1 1.7407 -5.3149 3.9272 44 1 1.0960 -7.4282 4.9730 45 1 1.3032 -7.1941 10.5468 46 1 3.0153 -6.1780 8.6248 47 1 3.6559 -4.0769 7.5523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852098780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:44 Heat of formation + Delta-G solvation = -39.818956 kcal Electronic energy + Delta-G solvation = -25456.431590 eV Core-core repulsion = 21797.785191 eV Total energy + Delta-G solvation = -3658.646400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.71503 -39.87642 -38.56765 -37.46490 -35.18911 -34.17636 -32.89272 -31.96306 -31.16439 -30.72267 -29.50506 -27.27514 -26.38526 -24.55114 -23.08343 -22.53196 -22.43149 -22.16263 -19.26904 -18.74454 -18.69739 -17.77747 -17.30982 -17.09454 -16.82257 -16.23959 -15.81515 -15.69635 -15.67090 -15.52499 -14.91164 -14.77333 -14.38030 -14.08679 -13.94772 -13.74126 -13.58776 -13.46728 -13.05931 -13.03702 -12.87427 -12.80700 -12.64283 -12.46335 -12.36539 -12.04672 -11.87477 -11.71737 -11.68557 -11.60470 -11.42244 -11.21929 -11.05387 -10.92190 -10.88785 -9.67713 -9.57592 -8.93917 -8.60333 -6.23650 0.93797 1.01302 1.39581 1.52535 1.52831 1.77124 1.84757 2.22395 2.38332 2.71675 3.14926 3.37215 3.52489 3.69040 3.82257 3.95390 3.97819 4.02308 4.07583 4.27059 4.32227 4.34729 4.43555 4.43863 4.56073 4.63924 4.67287 4.77330 4.85495 4.97008 5.03769 5.06207 5.07319 5.11890 5.13468 5.20562 5.27525 5.34993 5.40822 5.57215 5.63384 5.87236 5.90979 6.04812 6.24667 6.25576 6.55559 6.63171 6.79060 6.88301 6.94164 7.08924 8.36337 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.002006 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.252745 B =13952.610013 C =14261.130071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.231 4.231 3 C 0.218 3.782 4 C -0.139 4.139 5 C -0.104 4.104 6 C -0.150 4.150 7 N -0.659 5.659 8 C 0.039 3.961 9 C 0.127 3.873 10 H 0.093 0.907 11 O -0.555 6.555 12 C 0.031 3.969 13 O -0.330 6.330 14 C 0.000 4.000 15 C -0.165 4.165 16 C -0.208 4.208 17 C 0.054 3.946 18 C -0.498 4.498 19 H 0.077 0.923 20 C 0.032 3.968 21 N -0.831 5.831 22 Si 0.983 3.017 23 H -0.263 1.263 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.153 4.153 27 C -0.134 4.134 28 H 0.235 0.765 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.345 0.655 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.384 0.616 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.287 0.713 46 H 0.110 0.890 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 13.476 -19.650 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.233 4.233 3 C 0.127 3.873 4 C -0.196 4.196 5 C -0.142 4.142 6 C -0.208 4.208 7 N -0.288 5.288 8 C -0.091 4.091 9 C 0.067 3.933 10 H 0.111 0.889 11 O -0.362 6.362 12 C -0.046 4.046 13 O -0.246 6.246 14 C -0.044 4.044 15 C -0.184 4.184 16 C -0.227 4.227 17 C 0.052 3.948 18 C -0.528 4.528 19 H 0.095 0.905 20 C -0.182 4.182 21 N -0.458 5.458 22 Si 0.804 3.196 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.182 1.182 26 C -0.172 4.172 27 C -0.153 4.153 28 H 0.252 0.748 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.164 0.836 38 H 0.060 0.940 39 H 0.111 0.889 40 H 0.233 0.767 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.145 0.855 44 H 0.124 0.876 45 H 0.098 0.902 46 H 0.128 0.872 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.823 13.969 -19.127 23.755 hybrid contribution -1.568 -1.046 0.466 1.942 sum 0.255 12.923 -18.661 22.700 Atomic orbital electron populations 1.25732 0.96928 1.00228 0.99040 1.24639 0.96107 1.00900 1.01680 1.18319 0.81159 0.97733 0.90057 1.21951 1.02445 0.96860 0.98345 1.21504 1.01895 0.93364 0.97457 1.21818 1.00771 1.02363 0.95818 1.60762 1.61614 1.03659 1.02734 1.22480 0.98083 0.93435 0.95098 1.21713 0.81821 0.94413 0.95389 0.88927 1.86597 1.18199 1.60724 1.70644 1.23469 1.00039 0.99018 0.82037 1.85878 1.76028 1.35492 1.27209 1.18693 1.05018 0.87418 0.93289 1.20690 1.02839 0.95169 0.99654 1.20801 1.07012 0.98152 0.96767 1.17967 0.90784 0.93836 0.92228 1.19714 1.43401 0.97006 0.92671 0.90522 1.26763 0.91311 1.02014 0.98083 1.69893 1.35722 1.31391 1.08808 0.85184 0.79302 0.77364 0.77720 1.18777 1.19393 1.18156 1.20907 1.01382 0.94710 1.00221 1.20012 1.04037 0.98241 0.92985 0.74810 0.90225 0.92739 0.90839 0.89632 0.92098 0.93563 0.91473 0.91587 0.83629 0.93970 0.88860 0.76710 0.91893 0.91419 0.85450 0.87574 0.90202 0.87205 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.22 19.25 74.32 1.43 -1.79 16 2 C -0.23 -4.02 9.27 31.12 0.29 -3.73 16 3 C 0.22 3.34 0.69 1.72 0.00 3.34 16 4 C -0.14 -1.87 7.84 71.98 0.56 -1.31 16 5 C -0.10 -1.36 5.23 30.60 0.16 -1.20 16 6 C -0.15 -1.67 9.31 71.98 0.67 -1.00 16 7 N -0.66 -11.37 5.94 -479.20 -2.85 -14.22 16 8 C 0.04 0.71 4.65 86.30 0.40 1.11 16 9 C 0.13 3.01 3.46 30.59 0.11 3.12 16 10 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 11 O -0.56 -14.25 13.17 -144.32 -1.90 -16.15 16 12 C 0.03 0.89 4.36 71.98 0.31 1.20 16 13 O -0.33 -13.30 10.09 -85.30 -0.86 -14.16 16 14 C 0.00 -0.01 6.71 22.79 0.15 0.14 16 15 C -0.16 -7.28 8.96 22.11 0.20 -7.08 16 16 C -0.21 -10.25 9.74 22.48 0.22 -10.03 16 17 C 0.05 2.97 5.57 -21.28 -0.12 2.86 16 18 C -0.50 -27.16 9.04 23.40 0.21 -26.94 16 19 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 20 C 0.03 1.64 5.13 85.24 0.44 2.08 16 21 N -0.83 -44.33 10.96 21.82 0.24 -44.09 16 22 Si 0.98 38.66 29.60 68.60 2.03 40.69 16 23 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 24 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 25 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 26 C -0.15 -8.33 8.64 22.48 0.19 -8.14 16 27 C -0.13 -6.71 9.92 22.11 0.22 -6.49 16 28 H 0.24 2.35 7.80 -4.43 -0.03 2.32 16 29 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 0.78 6.40 -2.39 -0.02 0.77 16 31 H 0.07 0.87 6.43 -2.39 -0.02 0.85 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.60 7.23 -2.38 -0.02 0.58 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.65 6.43 -2.39 -0.02 0.64 16 37 H 0.35 6.08 8.71 -89.69 -0.78 5.30 16 38 H 0.04 0.82 7.10 -2.39 -0.02 0.80 16 39 H 0.09 1.54 6.30 -2.39 -0.02 1.53 16 40 H 0.38 7.34 9.04 -74.06 -0.67 6.67 16 41 H 0.06 1.75 7.63 -2.39 -0.02 1.73 16 42 H 0.07 1.78 7.66 -2.39 -0.02 1.76 16 43 H 0.13 4.62 6.27 -2.91 -0.02 4.61 16 44 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 45 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 46 H 0.11 6.21 6.16 -2.91 -0.02 6.19 16 47 H 0.11 4.99 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -64.86 385.06 1.64 -63.22 By element: Atomic # 1 Polarization: 39.06 SS G_CDS: -0.47 Total: 38.59 kcal Atomic # 6 Polarization: -59.32 SS G_CDS: 5.45 Total: -53.87 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -2.61 Total: -58.31 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -2.76 Total: -30.32 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -64.86 1.64 -63.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852098780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.400 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds