Wall clock time and date at job start Tue Mar 31 2020 13:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47104 * 15.57498 * 3 2 1 5 5 C 1.52996 * 109.46941 * 135.57459 * 3 2 1 6 6 C 1.53001 * 109.46975 * 299.99937 * 5 3 2 7 7 N 1.46896 * 109.46949 * 255.57656 * 3 2 1 8 8 C 1.46896 * 111.00251 * 60.00159 * 7 3 2 9 9 C 1.53006 * 109.47051 * 179.97438 * 8 7 3 10 10 H 1.09001 * 109.46999 * 305.00087 * 9 8 7 11 11 O 1.42894 * 109.46846 * 64.99832 * 9 8 7 12 12 C 1.52998 * 109.46751 * 184.99936 * 9 8 7 13 13 O 1.42909 * 109.46595 * 175.00141 * 12 9 8 14 14 C 1.35682 * 116.99515 * 179.97438 * 13 12 9 15 15 C 1.39309 * 119.81868 * 359.72543 * 14 13 12 16 16 C 1.36432 * 120.18322 * 179.75710 * 15 14 13 17 17 C 1.40841 * 119.81209 * 0.51580 * 16 15 14 18 18 C 1.41209 * 120.17960 * 179.71893 * 17 16 15 19 19 H 1.08000 * 120.00349 * 155.16666 * 18 17 16 20 20 C 1.39892 * 120.00130 * 335.16567 * 18 17 16 21 21 N 1.30881 * 120.00339 * 342.15793 * 20 18 17 22 22 Si 1.86800 * 120.00134 * 162.15960 * 20 18 17 23 23 H 1.48508 * 109.47325 * 94.65450 * 22 20 18 24 24 H 1.48503 * 109.47317 * 214.65587 * 22 20 18 25 25 H 1.48501 * 109.47233 * 334.65592 * 22 20 18 26 26 C 1.40825 * 119.64079 * 359.73842 * 17 16 15 27 27 C 1.36442 * 119.81292 * 0.02562 * 26 17 16 28 28 H 4.44654 * 5.63308 * 180.02562 * 4 1 2 29 29 H 1.09007 * 109.47102 * 300.00089 * 4 3 2 30 30 H 1.09006 * 109.47008 * 60.00001 * 4 3 2 31 31 H 1.09003 * 109.47417 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47300 * 60.00001 * 5 3 2 33 33 H 1.09003 * 109.46851 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46790 * 180.02562 * 6 5 3 35 35 H 1.09001 * 109.47728 * 299.99708 * 6 5 3 36 36 H 1.08995 * 109.47270 * 60.00661 * 6 5 3 37 37 H 1.00902 * 111.00258 * 296.04344 * 7 3 2 38 38 H 1.09003 * 109.47285 * 60.00074 * 8 7 3 39 39 H 1.08997 * 109.47000 * 299.99718 * 8 7 3 40 40 H 0.96705 * 114.00413 * 60.00635 * 11 9 8 41 41 H 1.08997 * 109.47585 * 294.99612 * 12 9 8 42 42 H 1.09000 * 109.47661 * 55.00279 * 12 9 8 43 43 H 1.07997 * 119.90912 * 0.02562 * 15 14 13 44 44 H 1.08004 * 120.10003 * 180.25397 * 16 15 14 45 45 H 0.96999 * 120.00704 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.09817 * 179.97438 * 26 17 16 47 47 H 1.07999 * 119.91063 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.3887 -0.3873 5 6 3.1556 1.0310 -1.0097 6 6 2.6457 0.6714 -2.4067 7 7 3.1355 0.3459 1.3413 8 6 2.6650 -0.6240 2.3392 9 6 3.1944 -0.2323 3.7203 10 1 4.2799 -0.1412 3.6808 11 8 2.6253 1.0187 4.1113 12 6 2.8095 -1.3081 4.7378 13 8 3.4019 -1.0018 6.0018 14 6 3.1570 -1.8627 7.0215 15 6 2.3539 -2.9805 6.8067 16 6 2.1068 -3.8537 7.8254 17 6 2.6574 -3.6165 9.0999 18 6 2.4018 -4.5120 10.1614 19 1 3.0955 -4.5841 10.9860 20 6 1.2501 -5.3059 10.1450 21 7 0.2498 -4.9917 9.3616 22 14 1.1397 -6.8144 11.2411 23 1 0.4544 -6.4560 12.5090 24 1 0.3697 -7.8766 10.5454 25 1 2.5072 -7.3099 11.5406 26 6 3.4638 -2.4813 9.3100 27 6 3.7051 -1.6205 8.2792 28 1 -1.0498 -0.0003 -0.0003 29 1 2.7937 -2.1228 0.3321 30 1 2.7934 -1.6448 -1.3826 31 1 4.2467 -1.3881 -0.3878 32 1 2.7918 2.0208 -0.7338 33 1 4.2456 1.0312 -1.0100 34 1 3.0091 1.4053 -3.1262 35 1 3.0095 -0.3183 -2.6827 36 1 1.5557 0.6710 -2.4067 37 1 2.8657 1.2847 1.5942 38 1 3.0290 -1.6181 2.0795 39 1 1.5752 -0.6288 2.3555 40 1 1.6599 1.0113 4.1674 41 1 1.7250 -1.3378 4.8426 42 1 3.1680 -2.2784 4.3941 43 1 1.9292 -3.1588 5.8298 44 1 1.4873 -4.7221 7.6563 45 1 -0.5490 -5.5418 9.3504 46 1 3.8894 -2.2921 10.2844 47 1 4.3230 -0.7492 8.4386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852098781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:50 Heat of formation + Delta-G solvation = -22.719527 kcal Electronic energy + Delta-G solvation = -25548.137631 eV Core-core repulsion = 21890.232718 eV Total energy + Delta-G solvation = -3657.904913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.44951 -38.73109 -37.28025 -36.01126 -33.39661 -33.33212 -32.24732 -30.44123 -29.62893 -29.17536 -28.64571 -26.14595 -24.72304 -23.55103 -21.94109 -21.77827 -20.89163 -20.35806 -18.01605 -17.37070 -17.16933 -16.57133 -16.42054 -16.10194 -15.47975 -15.16767 -14.88772 -14.46649 -14.24278 -13.93871 -13.85261 -13.59773 -12.99892 -12.88081 -12.68608 -12.42999 -12.42006 -12.31305 -12.02374 -11.83219 -11.75432 -11.45116 -11.35095 -11.15662 -11.12309 -11.00661 -10.81003 -10.73001 -10.60109 -10.39742 -10.00864 -9.92456 -9.78417 -9.36697 -9.01372 -8.95395 -7.65744 -7.00967 -6.73428 -4.25333 2.47421 2.52990 2.76433 2.96283 3.07455 3.11822 3.21221 3.53874 3.93759 3.94738 4.21640 4.41539 4.54771 4.61419 4.62801 4.93544 4.98696 5.02116 5.11719 5.19639 5.25865 5.29052 5.38951 5.49855 5.61676 5.64115 5.65351 5.66857 5.68133 5.71253 5.91717 5.97128 6.08268 6.10159 6.28800 6.63345 6.72332 6.89181 7.04962 7.06516 7.27710 7.30075 7.40624 7.55792 7.62380 7.90321 8.00030 8.15334 8.44548 8.64938 8.89925 8.99143 10.21499 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.002186 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.993118 B =12808.416086 C =13482.277820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.208 4.208 3 C 0.220 3.780 4 C -0.141 4.141 5 C -0.107 4.107 6 C -0.153 4.153 7 N -0.663 5.663 8 C 0.026 3.974 9 C 0.113 3.887 10 H 0.115 0.885 11 O -0.551 6.551 12 C 0.040 3.960 13 O -0.318 6.318 14 C -0.009 4.009 15 C -0.175 4.175 16 C -0.134 4.134 17 C 0.087 3.913 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.801 5.801 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.195 4.195 27 C -0.112 4.112 28 H 0.215 0.785 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.352 0.648 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.370 0.630 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.279 0.721 46 H 0.100 0.900 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.761 7.253 -20.039 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.210 4.210 3 C 0.129 3.871 4 C -0.199 4.199 5 C -0.145 4.145 6 C -0.211 4.211 7 N -0.293 5.293 8 C -0.103 4.103 9 C 0.053 3.947 10 H 0.133 0.867 11 O -0.356 6.356 12 C -0.037 4.037 13 O -0.234 6.234 14 C -0.053 4.053 15 C -0.194 4.194 16 C -0.154 4.154 17 C 0.084 3.916 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.427 5.427 22 Si 0.731 3.269 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.215 4.215 27 C -0.131 4.131 28 H 0.232 0.768 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.171 0.829 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.216 0.784 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.138 0.862 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.914 7.216 -20.139 21.478 hybrid contribution -2.320 -0.929 0.497 2.548 sum -0.405 6.287 -19.642 20.627 Atomic orbital electron populations 1.25061 0.96032 1.00633 0.99954 1.24289 0.95456 1.00513 1.00748 1.18209 0.81472 0.97138 0.90312 1.21964 1.02220 0.94054 1.01627 1.21515 1.01738 0.97557 0.93675 1.21844 1.01400 1.01825 0.96049 1.60758 1.61602 1.06782 1.00151 1.22636 0.98162 0.97586 0.91922 1.21960 1.00095 0.83236 0.89384 0.86697 1.86628 1.25000 1.32745 1.91194 1.23075 0.97668 0.98103 0.84877 1.85867 1.71192 1.49275 1.17024 1.18602 1.05129 0.93459 0.88065 1.20588 1.02723 0.97103 0.98941 1.20928 1.02927 0.99671 0.91845 1.17598 0.90626 0.90786 0.92547 1.19460 1.05564 1.18368 1.05881 0.90486 1.25879 0.94753 0.98053 0.95512 1.69841 1.03764 1.35359 1.33774 0.86338 0.79402 0.81028 0.80165 1.19646 1.20149 1.18469 1.20606 1.07349 0.96516 0.97020 1.19627 1.02491 1.00185 0.90809 0.76842 0.92133 0.91578 0.90652 0.91705 0.89990 0.92389 0.92140 0.92673 0.82880 0.89337 0.94210 0.78356 0.93024 0.92322 0.88966 0.86191 0.91049 0.88178 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 19.25 29.55 0.57 -1.20 16 2 C -0.21 -2.00 9.27 -37.12 -0.34 -2.34 16 3 C 0.22 1.92 0.69 -134.39 -0.09 1.82 16 4 C -0.14 -1.15 7.84 37.16 0.29 -0.86 16 5 C -0.11 -0.79 5.23 -26.73 -0.14 -0.93 16 6 C -0.15 -1.00 9.31 37.16 0.35 -0.66 16 7 N -0.66 -6.44 6.08 -102.83 -0.62 -7.06 16 8 C 0.03 0.28 4.66 -3.82 -0.02 0.26 16 9 C 0.11 1.45 3.49 -26.73 -0.09 1.36 16 10 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 11 O -0.55 -7.43 12.82 -40.08 -0.51 -7.94 16 12 C 0.04 0.64 4.37 37.16 0.16 0.80 16 13 O -0.32 -6.60 10.09 -23.60 -0.24 -6.84 16 14 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 15 C -0.17 -4.13 8.96 -39.83 -0.36 -4.48 16 16 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 17 C 0.09 2.33 5.57 -106.81 -0.59 1.74 16 18 C -0.46 -12.34 9.04 -37.84 -0.34 -12.68 16 19 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.81 10.97 55.54 0.61 -20.20 16 22 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 26 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 27 C -0.11 -2.67 9.92 -39.83 -0.40 -3.06 16 28 H 0.21 1.29 7.80 -54.10 -0.42 0.87 16 29 H 0.06 0.53 6.40 -51.93 -0.33 0.20 16 30 H 0.07 0.48 6.43 -51.93 -0.33 0.14 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 36 H 0.05 0.40 7.23 -51.93 -0.38 0.03 16 37 H 0.35 3.48 8.27 -39.29 -0.32 3.16 16 38 H 0.09 0.91 6.30 -51.93 -0.33 0.58 16 39 H 0.04 0.43 7.10 -51.93 -0.37 0.06 16 40 H 0.37 3.91 9.05 45.56 0.41 4.32 16 41 H 0.05 0.81 7.63 -51.93 -0.40 0.41 16 42 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 43 H 0.09 1.93 6.27 -52.49 -0.33 1.60 16 44 H 0.12 3.21 6.18 -52.48 -0.32 2.88 16 45 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 46 H 0.10 2.32 8.06 -52.49 -0.42 1.89 16 47 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -29.80 384.47 -8.45 -38.24 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -6.36 Total: 12.34 kcal Atomic # 6 Polarization: -25.95 SS G_CDS: -2.08 Total: -28.03 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: -0.02 Total: -27.26 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.75 Total: -14.78 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.80 -8.45 -38.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852098781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.523 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds