Wall clock time and date at job start Tue Mar 31 2020 13:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47104 * 15.57498 * 3 2 1 5 5 C 1.52996 * 109.46941 * 135.57459 * 3 2 1 6 6 C 1.53001 * 109.46975 * 299.99937 * 5 3 2 7 7 N 1.46896 * 109.46949 * 255.57656 * 3 2 1 8 8 C 1.46896 * 111.00251 * 60.00159 * 7 3 2 9 9 C 1.53006 * 109.47051 * 179.97438 * 8 7 3 10 10 H 1.09001 * 109.46999 * 305.00087 * 9 8 7 11 11 O 1.42894 * 109.46846 * 64.99832 * 9 8 7 12 12 C 1.52998 * 109.46751 * 184.99936 * 9 8 7 13 13 O 1.42909 * 109.46595 * 175.00141 * 12 9 8 14 14 C 1.35682 * 116.99515 * 179.97438 * 13 12 9 15 15 C 1.39309 * 119.81868 * 359.72543 * 14 13 12 16 16 C 1.36432 * 120.18322 * 179.75710 * 15 14 13 17 17 C 1.40841 * 119.81209 * 0.51580 * 16 15 14 18 18 C 1.41209 * 120.17960 * 179.71893 * 17 16 15 19 19 H 1.08000 * 120.00349 * 155.16666 * 18 17 16 20 20 C 1.39892 * 120.00130 * 335.16567 * 18 17 16 21 21 N 1.30881 * 120.00339 * 342.15793 * 20 18 17 22 22 Si 1.86800 * 120.00134 * 162.15960 * 20 18 17 23 23 H 1.48508 * 109.47325 * 94.65450 * 22 20 18 24 24 H 1.48503 * 109.47317 * 214.65587 * 22 20 18 25 25 H 1.48501 * 109.47233 * 334.65592 * 22 20 18 26 26 C 1.40825 * 119.64079 * 359.73842 * 17 16 15 27 27 C 1.36442 * 119.81292 * 0.02562 * 26 17 16 28 28 H 4.44654 * 5.63308 * 180.02562 * 4 1 2 29 29 H 1.09007 * 109.47102 * 300.00089 * 4 3 2 30 30 H 1.09006 * 109.47008 * 60.00001 * 4 3 2 31 31 H 1.09003 * 109.47417 * 179.97438 * 4 3 2 32 32 H 1.08997 * 109.47300 * 60.00001 * 5 3 2 33 33 H 1.09003 * 109.46851 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46790 * 180.02562 * 6 5 3 35 35 H 1.09001 * 109.47728 * 299.99708 * 6 5 3 36 36 H 1.08995 * 109.47270 * 60.00661 * 6 5 3 37 37 H 1.00902 * 111.00258 * 296.04344 * 7 3 2 38 38 H 1.09003 * 109.47285 * 60.00074 * 8 7 3 39 39 H 1.08997 * 109.47000 * 299.99718 * 8 7 3 40 40 H 0.96705 * 114.00413 * 60.00635 * 11 9 8 41 41 H 1.08997 * 109.47585 * 294.99612 * 12 9 8 42 42 H 1.09000 * 109.47661 * 55.00279 * 12 9 8 43 43 H 1.07997 * 119.90912 * 0.02562 * 15 14 13 44 44 H 1.08004 * 120.10003 * 180.25397 * 16 15 14 45 45 H 0.96999 * 120.00704 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.09817 * 179.97438 * 26 17 16 47 47 H 1.07999 * 119.91063 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1567 -1.3887 -0.3873 5 6 3.1556 1.0310 -1.0097 6 6 2.6457 0.6714 -2.4067 7 7 3.1355 0.3459 1.3413 8 6 2.6650 -0.6240 2.3392 9 6 3.1944 -0.2323 3.7203 10 1 4.2799 -0.1412 3.6808 11 8 2.6253 1.0187 4.1113 12 6 2.8095 -1.3081 4.7378 13 8 3.4019 -1.0018 6.0018 14 6 3.1570 -1.8627 7.0215 15 6 2.3539 -2.9805 6.8067 16 6 2.1068 -3.8537 7.8254 17 6 2.6574 -3.6165 9.0999 18 6 2.4018 -4.5120 10.1614 19 1 3.0955 -4.5841 10.9860 20 6 1.2501 -5.3059 10.1450 21 7 0.2498 -4.9917 9.3616 22 14 1.1397 -6.8144 11.2411 23 1 0.4544 -6.4560 12.5090 24 1 0.3697 -7.8766 10.5454 25 1 2.5072 -7.3099 11.5406 26 6 3.4638 -2.4813 9.3100 27 6 3.7051 -1.6205 8.2792 28 1 -1.0498 -0.0003 -0.0003 29 1 2.7937 -2.1228 0.3321 30 1 2.7934 -1.6448 -1.3826 31 1 4.2467 -1.3881 -0.3878 32 1 2.7918 2.0208 -0.7338 33 1 4.2456 1.0312 -1.0100 34 1 3.0091 1.4053 -3.1262 35 1 3.0095 -0.3183 -2.6827 36 1 1.5557 0.6710 -2.4067 37 1 2.8657 1.2847 1.5942 38 1 3.0290 -1.6181 2.0795 39 1 1.5752 -0.6288 2.3555 40 1 1.6599 1.0113 4.1674 41 1 1.7250 -1.3378 4.8426 42 1 3.1680 -2.2784 4.3941 43 1 1.9292 -3.1588 5.8298 44 1 1.4873 -4.7221 7.6563 45 1 -0.5490 -5.5418 9.3504 46 1 3.8894 -2.2921 10.2844 47 1 4.3230 -0.7492 8.4386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852098781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:49 Heat of formation + Delta-G solvation = -41.387422 kcal Electronic energy + Delta-G solvation = -25548.947132 eV Core-core repulsion = 21890.232718 eV Total energy + Delta-G solvation = -3658.714413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.73040 -39.90643 -38.58948 -37.52577 -35.21499 -34.17385 -32.89714 -31.74397 -31.48668 -30.65899 -29.53292 -27.28106 -26.37014 -24.53567 -23.19619 -22.58013 -22.43509 -22.02685 -19.28138 -18.72704 -18.67017 -17.83326 -17.50816 -17.12245 -16.83199 -16.21201 -15.87052 -15.81725 -15.65166 -15.35860 -14.93009 -14.74464 -14.43195 -14.20534 -13.85438 -13.71502 -13.56668 -13.42920 -13.22318 -13.04914 -12.94308 -12.75722 -12.73442 -12.44776 -12.31378 -12.03348 -11.92726 -11.71917 -11.69724 -11.60692 -11.44536 -11.24369 -11.09857 -10.99495 -10.86194 -9.72980 -9.58347 -8.92045 -8.61286 -6.23400 0.92488 1.03088 1.39215 1.48874 1.55221 1.76920 1.84603 2.22269 2.37020 2.71356 3.14999 3.36535 3.41197 3.69104 3.89432 3.92632 3.96537 3.98963 4.05570 4.27200 4.29678 4.36059 4.42865 4.45762 4.53904 4.63937 4.65882 4.78033 4.86666 4.97300 5.00940 5.02860 5.08371 5.10803 5.12780 5.14209 5.34071 5.35784 5.40258 5.50775 5.65069 5.89497 5.95797 6.05218 6.22410 6.27732 6.54704 6.62873 6.69875 6.78596 6.94246 7.08791 8.35837 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.002186 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.993118 B =12808.416086 C =13482.277820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.231 4.231 3 C 0.218 3.782 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.150 4.150 7 N -0.664 5.664 8 C 0.039 3.961 9 C 0.126 3.874 10 H 0.107 0.893 11 O -0.564 6.564 12 C 0.032 3.968 13 O -0.328 6.328 14 C -0.001 4.001 15 C -0.175 4.175 16 C -0.155 4.155 17 C 0.053 3.947 18 C -0.498 4.498 19 H 0.076 0.924 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.259 1.259 26 C -0.204 4.204 27 C -0.123 4.123 28 H 0.236 0.764 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.350 0.650 38 H 0.093 0.907 39 H 0.040 0.960 40 H 0.382 0.618 41 H 0.057 0.943 42 H 0.067 0.933 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.287 0.713 46 H 0.110 0.890 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 7.210 -21.156 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.233 4.233 3 C 0.127 3.873 4 C -0.198 4.198 5 C -0.142 4.142 6 C -0.208 4.208 7 N -0.294 5.294 8 C -0.091 4.091 9 C 0.066 3.934 10 H 0.125 0.875 11 O -0.371 6.371 12 C -0.044 4.044 13 O -0.243 6.243 14 C -0.045 4.045 15 C -0.194 4.194 16 C -0.174 4.174 17 C 0.051 3.949 18 C -0.528 4.528 19 H 0.094 0.906 20 C -0.180 4.180 21 N -0.459 5.459 22 Si 0.802 3.198 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.224 4.224 27 C -0.141 4.141 28 H 0.253 0.747 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.170 0.830 38 H 0.111 0.889 39 H 0.058 0.942 40 H 0.231 0.769 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.097 0.903 46 H 0.128 0.872 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.735 7.193 -21.279 22.529 hybrid contribution -2.269 -0.778 0.714 2.503 sum -0.534 6.415 -20.565 21.549 Atomic orbital electron populations 1.25726 0.96887 0.99996 0.99189 1.24590 0.96044 1.01172 1.01479 1.18303 0.81333 0.97796 0.89868 1.21974 1.02452 0.93494 1.01904 1.21506 1.01917 0.97013 0.93791 1.21818 1.00799 1.02445 0.95718 1.60761 1.61682 1.06487 1.00457 1.22459 0.97989 0.97948 0.90669 1.21819 0.99712 0.82173 0.89647 0.87503 1.86597 1.26301 1.32883 1.91292 1.23426 0.97841 0.99826 0.83318 1.85864 1.71599 1.48736 1.18129 1.18719 1.03813 0.93229 0.88767 1.20790 1.02479 0.96656 0.99495 1.20910 1.03824 1.00192 0.92507 1.17967 0.91815 0.91851 0.93227 1.19709 1.06646 1.20100 1.06371 0.90590 1.26734 0.93805 1.00549 0.96962 1.69887 1.04352 1.36547 1.35079 0.85205 0.79421 0.76907 0.78235 1.18842 1.19091 1.18294 1.20803 1.07213 0.96349 0.98019 1.19909 1.02695 1.00613 0.90898 0.74743 0.92877 0.90714 0.90265 0.92000 0.89597 0.91388 0.91651 0.93522 0.83034 0.88881 0.94178 0.76909 0.92529 0.91441 0.86495 0.87522 0.90255 0.87199 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 19.25 74.32 1.43 -1.81 16 2 C -0.23 -4.11 9.27 31.12 0.29 -3.82 16 3 C 0.22 3.50 0.69 1.72 0.00 3.50 16 4 C -0.14 -2.08 7.84 71.98 0.56 -1.52 16 5 C -0.10 -1.40 5.23 30.59 0.16 -1.24 16 6 C -0.15 -1.73 9.31 71.98 0.67 -1.06 16 7 N -0.66 -11.97 6.08 -479.23 -2.91 -14.88 16 8 C 0.04 0.76 4.66 86.31 0.40 1.16 16 9 C 0.13 3.07 3.49 30.60 0.11 3.18 16 10 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 11 O -0.56 -14.39 12.82 -144.34 -1.85 -16.24 16 12 C 0.03 0.98 4.37 71.98 0.31 1.29 16 13 O -0.33 -13.18 10.09 -85.37 -0.86 -14.04 16 14 C 0.00 -0.07 6.71 22.79 0.15 0.09 16 15 C -0.18 -8.24 8.96 22.11 0.20 -8.05 16 16 C -0.15 -8.23 8.64 22.49 0.19 -8.04 16 17 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 18 C -0.50 -27.18 9.04 23.40 0.21 -26.97 16 19 H 0.08 3.99 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.69 5.13 85.24 0.44 2.13 16 21 N -0.83 -43.77 10.97 21.82 0.24 -43.53 16 22 Si 0.98 38.41 29.59 68.60 2.03 40.44 16 23 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 24 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 26 C -0.20 -10.32 9.74 22.48 0.22 -10.10 16 27 C -0.12 -5.77 9.92 22.11 0.22 -5.55 16 28 H 0.24 2.37 7.80 -4.43 -0.03 2.34 16 29 H 0.05 0.85 6.40 -2.38 -0.02 0.84 16 30 H 0.07 0.96 6.43 -2.38 -0.02 0.94 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 36 H 0.05 0.62 7.23 -2.39 -0.02 0.60 16 37 H 0.35 6.50 8.27 -89.69 -0.74 5.75 16 38 H 0.09 1.75 6.30 -2.39 -0.02 1.73 16 39 H 0.04 0.79 7.10 -2.39 -0.02 0.77 16 40 H 0.38 7.49 9.05 -74.05 -0.67 6.82 16 41 H 0.06 1.67 7.63 -2.39 -0.02 1.65 16 42 H 0.07 1.93 7.66 -2.39 -0.02 1.92 16 43 H 0.12 4.77 6.27 -2.91 -0.02 4.75 16 44 H 0.11 5.87 6.18 -2.91 -0.02 5.85 16 45 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 46 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 47 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -63.69 384.47 1.67 -62.02 By element: Atomic # 1 Polarization: 40.65 SS G_CDS: -0.43 Total: 40.22 kcal Atomic # 6 Polarization: -59.44 SS G_CDS: 5.45 Total: -53.99 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -2.67 Total: -58.41 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -2.71 Total: -30.28 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -63.69 1.67 -62.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852098781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.629 kcal (2) G-P(sol) polarization free energy of solvation -63.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds