Wall clock time and date at job start Tue Mar 31 2020 13:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99797 * 2 1 4 4 C 1.53001 * 109.47017 * 125.00462 * 3 2 1 5 5 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47528 * 59.99416 * 5 4 3 7 7 C 1.53002 * 109.46442 * 299.99517 * 5 4 3 8 8 N 1.46495 * 109.47156 * 179.97438 * 5 4 3 9 9 C 1.34775 * 120.00172 * 179.97438 * 8 5 4 10 10 O 1.21287 * 119.99798 * 0.02562 * 9 8 5 11 11 C 1.50705 * 120.00246 * 179.97438 * 9 8 5 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.07992 * 119.99829 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99797 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00228 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46987 * 5.00428 * 3 2 1 31 31 H 1.08994 * 109.47703 * 245.00415 * 3 2 1 32 32 H 1.08998 * 109.47318 * 59.99663 * 4 3 2 33 33 H 1.09005 * 109.46796 * 299.99943 * 4 3 2 34 34 H 1.08995 * 109.46961 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.47288 * 300.00206 * 6 5 4 36 36 H 1.09005 * 109.47091 * 60.00247 * 6 5 4 37 37 H 1.09003 * 109.47457 * 300.00016 * 7 5 4 38 38 H 1.08995 * 109.47293 * 60.00456 * 7 5 4 39 39 H 1.09004 * 109.46769 * 179.97438 * 7 5 4 40 40 H 0.97005 * 120.00223 * 359.97438 * 8 5 4 41 41 H 1.08998 * 109.46621 * 60.00483 * 11 9 8 42 42 H 1.08996 * 109.47266 * 300.00146 * 11 9 8 43 43 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 44 44 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 45 45 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 47 47 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 6 2.8099 3.8182 1.3080 7 6 4.5825 2.7957 -0.1254 8 7 4.7295 2.6853 2.3137 9 6 5.5143 3.7623 2.5155 10 8 5.4504 4.7093 1.7605 11 6 6.4705 3.7903 3.6801 12 6 7.2235 5.0956 3.6804 13 6 6.7176 6.1840 4.3673 14 6 7.4055 7.3815 4.3700 15 6 8.6065 7.4921 3.6813 16 8 9.2854 8.6676 3.6825 17 6 8.8004 9.6538 4.4637 18 1 7.8662 9.5174 4.9880 19 6 9.5012 10.8432 4.5937 20 7 10.6394 11.0093 3.9554 21 14 8.8297 12.2092 5.6766 22 1 9.3446 12.0430 7.0595 23 1 9.2645 13.5243 5.1411 24 1 7.3460 12.1462 5.6899 25 6 9.1089 6.3992 2.9872 26 6 8.4189 5.2028 2.9932 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.7400 0.5065 1.0920 33 1 2.4773 1.2355 2.1130 34 1 3.3546 4.7623 1.3079 35 1 2.1177 3.7983 0.4663 36 1 2.2521 3.7202 2.2394 37 1 5.2877 1.9694 -0.2152 38 1 3.8904 2.7759 -0.9671 39 1 5.1269 3.7401 -0.1253 40 1 4.7804 1.9281 2.9178 41 1 7.1754 2.9637 3.5912 42 1 5.9121 3.6932 4.6111 43 1 5.7838 6.0973 4.9030 44 1 7.0101 8.2309 4.9070 45 1 11.1294 11.8415 4.0461 46 1 10.0403 6.4834 2.4471 47 1 8.8113 4.3512 2.4573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856374187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:49 Heat of formation + Delta-G solvation = -33.230829 kcal Electronic energy + Delta-G solvation = -25671.264191 eV Core-core repulsion = 22012.903474 eV Total energy + Delta-G solvation = -3658.360717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.25500 -38.91721 -37.58816 -36.35438 -34.84658 -32.61982 -32.19945 -30.94283 -30.08416 -28.99690 -27.40420 -26.59788 -25.17554 -24.53476 -21.90959 -21.35727 -20.24362 -19.88642 -19.48639 -17.91994 -17.15359 -16.83366 -16.19824 -15.64175 -15.24068 -14.78813 -14.53037 -14.32851 -14.26506 -14.18718 -13.68972 -13.49265 -13.43239 -13.31785 -13.06149 -12.64817 -12.58024 -12.43974 -12.16509 -11.91324 -11.70189 -11.56690 -11.47435 -11.33938 -11.21500 -11.01425 -10.89812 -10.77080 -10.69461 -10.56677 -10.38554 -9.76128 -9.34562 -9.27162 -9.05756 -8.76834 -8.08470 -7.09759 -6.39822 -3.98235 1.88486 2.31304 2.33372 2.85682 3.14620 3.16702 3.21656 3.25115 4.01193 4.30838 4.52198 4.59922 4.73680 4.79726 4.91187 5.07042 5.07573 5.13020 5.16937 5.28715 5.32245 5.38281 5.40631 5.47977 5.60217 5.62801 5.65607 5.73524 5.75856 5.79448 5.84331 5.84906 5.91526 6.18712 6.27767 6.28945 6.31167 6.38940 6.48382 6.58194 6.76967 6.98090 7.11602 7.30401 7.43729 7.50543 7.59329 7.90771 8.05671 8.43811 9.05964 9.77343 10.78418 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.002132 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.466463 B =13127.620925 C =13477.897770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.096 4.096 4 C -0.115 4.115 5 C 0.174 3.826 6 C -0.166 4.166 7 C -0.166 4.166 8 N -0.735 5.735 9 C 0.512 3.488 10 O -0.515 6.515 11 C -0.082 4.082 12 C -0.167 4.167 13 C -0.057 4.057 14 C -0.232 4.232 15 C 0.156 3.844 16 O -0.179 6.179 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.192 4.192 26 C -0.060 4.060 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.395 0.605 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.116 0.884 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.231 -21.984 -3.742 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.170 4.170 3 C -0.133 4.133 4 C -0.153 4.153 5 C 0.089 3.911 6 C -0.224 4.224 7 C -0.224 4.224 8 N -0.389 5.389 9 C 0.299 3.701 10 O -0.390 6.390 11 C -0.121 4.121 12 C -0.169 4.169 13 C -0.075 4.075 14 C -0.252 4.252 15 C 0.103 3.897 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.211 4.211 26 C -0.078 4.078 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.229 0.771 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.886 -20.991 -4.445 26.697 hybrid contribution -0.441 0.194 0.862 0.987 sum -16.327 -20.797 -3.583 26.682 Atomic orbital electron populations 1.23873 0.96018 1.01845 1.01598 1.22975 0.96025 0.98500 0.99532 1.20877 0.98163 0.95552 0.98733 1.21763 0.97997 0.96405 0.99120 1.20241 0.89075 0.95074 0.86726 1.22283 0.98704 1.00085 1.01356 1.22284 1.00491 1.03820 0.95829 1.46244 1.41689 1.20235 1.30690 1.20968 0.80619 0.81860 0.86702 1.90679 1.66907 1.34990 1.46379 1.20424 0.97070 0.98042 0.96608 1.18626 0.97572 0.94318 1.06352 1.20498 0.97456 0.92297 0.97264 1.21100 0.97812 0.98770 1.07479 1.19385 0.90678 0.86942 0.92731 1.83976 1.48392 1.17237 1.58658 1.21323 1.07100 0.92713 1.25526 0.89114 1.25282 0.95558 0.97954 0.97786 1.70040 1.13676 1.26188 1.39985 0.85719 0.79042 0.79401 0.79301 1.19922 1.20294 1.19228 1.20150 1.02435 0.91861 1.06646 1.20391 0.94150 0.96186 0.97081 0.88579 0.88623 0.87490 0.90829 0.90313 0.91274 0.91311 0.90047 0.91964 0.92915 0.92880 0.91936 0.90040 0.77090 0.89152 0.89196 0.87910 0.85648 0.92096 0.86607 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.16 14.32 29.01 0.42 -0.74 16 2 C -0.15 -0.92 9.52 -36.03 -0.34 -1.27 16 3 C -0.10 -0.61 4.95 -27.89 -0.14 -0.75 16 4 C -0.11 -0.76 4.37 -26.73 -0.12 -0.87 16 5 C 0.17 1.61 0.83 -131.82 -0.11 1.50 16 6 C -0.17 -1.75 8.05 37.16 0.30 -1.45 16 7 C -0.17 -1.71 8.05 37.16 0.30 -1.41 16 8 N -0.73 -7.02 5.10 -47.61 -0.24 -7.26 16 9 C 0.51 6.84 7.24 -10.98 -0.08 6.76 16 10 O -0.52 -9.17 12.24 5.55 0.07 -9.11 16 11 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 12 C -0.17 -2.94 4.38 -104.58 -0.46 -3.40 16 13 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 14 C -0.23 -5.29 9.17 -39.39 -0.36 -5.66 16 15 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 16 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 17 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 18 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.83 13.67 55.48 0.76 -25.08 16 21 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 C -0.19 -4.26 9.99 -39.39 -0.39 -4.65 16 26 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 27 H 0.10 0.55 7.84 -52.49 -0.41 0.13 16 28 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 29 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 30 H 0.07 0.49 6.08 -51.93 -0.32 0.17 16 31 H 0.08 0.50 6.43 -51.93 -0.33 0.17 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 1.14 6.17 -51.93 -0.32 0.82 16 35 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 39 H 0.08 1.12 6.17 -51.93 -0.32 0.80 16 40 H 0.40 2.59 8.47 -40.82 -0.35 2.25 16 41 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 43 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 44 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 47 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -33.69 381.55 -7.74 -41.43 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.06 Total: 5.96 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -1.99 Total: -22.37 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.52 Total: -32.34 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.07 Total: -14.39 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.69 -7.74 -41.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856374187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.198 kcal (2) G-P(sol) polarization free energy of solvation -33.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds