Wall clock time and date at job start Tue Mar 31 2020 13:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50695 * 119.99797 * 2 1 4 4 C 1.53001 * 109.47017 * 125.00462 * 3 2 1 5 5 C 1.53004 * 109.47255 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47528 * 59.99416 * 5 4 3 7 7 C 1.53002 * 109.46442 * 299.99517 * 5 4 3 8 8 N 1.46495 * 109.47156 * 179.97438 * 5 4 3 9 9 C 1.34775 * 120.00172 * 179.97438 * 8 5 4 10 10 O 1.21287 * 119.99798 * 0.02562 * 9 8 5 11 11 C 1.50705 * 120.00246 * 179.97438 * 9 8 5 12 12 C 1.50695 * 109.46992 * 180.02562 * 11 9 8 13 13 C 1.38299 * 119.93247 * 90.00201 * 12 11 9 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.07992 * 119.99829 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99797 * 179.97438 * 1 2 3 29 29 H 1.07996 * 120.00228 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.46987 * 5.00428 * 3 2 1 31 31 H 1.08994 * 109.47703 * 245.00415 * 3 2 1 32 32 H 1.08998 * 109.47318 * 59.99663 * 4 3 2 33 33 H 1.09005 * 109.46796 * 299.99943 * 4 3 2 34 34 H 1.08995 * 109.46961 * 180.02562 * 6 5 4 35 35 H 1.08995 * 109.47288 * 300.00206 * 6 5 4 36 36 H 1.09005 * 109.47091 * 60.00247 * 6 5 4 37 37 H 1.09003 * 109.47457 * 300.00016 * 7 5 4 38 38 H 1.08995 * 109.47293 * 60.00456 * 7 5 4 39 39 H 1.09004 * 109.46769 * 179.97438 * 7 5 4 40 40 H 0.97005 * 120.00223 * 359.97438 * 8 5 4 41 41 H 1.08998 * 109.46621 * 60.00483 * 11 9 8 42 42 H 1.08996 * 109.47266 * 300.00146 * 11 9 8 43 43 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 44 44 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 45 45 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 46 46 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 47 47 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7996 2.6583 1.1820 6 6 2.8099 3.8182 1.3080 7 6 4.5825 2.7957 -0.1254 8 7 4.7295 2.6853 2.3137 9 6 5.5143 3.7623 2.5155 10 8 5.4504 4.7093 1.7605 11 6 6.4705 3.7903 3.6801 12 6 7.2235 5.0956 3.6804 13 6 6.7176 6.1840 4.3673 14 6 7.4055 7.3815 4.3700 15 6 8.6065 7.4921 3.6813 16 8 9.2854 8.6676 3.6825 17 6 8.8004 9.6538 4.4637 18 1 7.8662 9.5174 4.9880 19 6 9.5012 10.8432 4.5937 20 7 10.6394 11.0093 3.9554 21 14 8.8297 12.2092 5.6766 22 1 9.3446 12.0430 7.0595 23 1 9.2645 13.5243 5.1411 24 1 7.3460 12.1462 5.6899 25 6 9.1089 6.3992 2.9872 26 6 8.4189 5.2028 2.9932 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4027 -0.9313 32 1 3.7400 0.5065 1.0920 33 1 2.4773 1.2355 2.1130 34 1 3.3546 4.7623 1.3079 35 1 2.1177 3.7983 0.4663 36 1 2.2521 3.7202 2.2394 37 1 5.2877 1.9694 -0.2152 38 1 3.8904 2.7759 -0.9671 39 1 5.1269 3.7401 -0.1253 40 1 4.7804 1.9281 2.9178 41 1 7.1754 2.9637 3.5912 42 1 5.9121 3.6932 4.6111 43 1 5.7838 6.0973 4.9030 44 1 7.0101 8.2309 4.9070 45 1 11.1294 11.8415 4.0461 46 1 10.0403 6.4834 2.4471 47 1 8.8113 4.3512 2.4573 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856374187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:48 Heat of formation + Delta-G solvation = -54.376094 kcal Electronic energy + Delta-G solvation = -25672.181118 eV Core-core repulsion = 22012.903474 eV Total energy + Delta-G solvation = -3659.277644 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29462 -40.59471 -38.69763 -37.83720 -35.50263 -34.39746 -33.45233 -32.20890 -31.75731 -29.65391 -28.23071 -28.13649 -26.98793 -25.27595 -23.62458 -22.69041 -21.23011 -20.61346 -20.27326 -19.83213 -18.84461 -18.00739 -17.02155 -16.58394 -16.40471 -16.21015 -15.88578 -15.79317 -15.52716 -15.26200 -14.97373 -14.94284 -14.58863 -14.38520 -14.24826 -14.00115 -13.69625 -13.59297 -13.17959 -13.00611 -12.94311 -12.79816 -12.50756 -12.44381 -12.25921 -12.24238 -12.11962 -12.11241 -12.10045 -11.60416 -11.52007 -11.17561 -10.80860 -10.49021 -10.10694 -9.95387 -9.75176 -8.88125 -8.47147 -6.15295 0.62500 0.69304 1.33577 1.43268 1.45714 1.51569 1.84754 2.17703 2.33538 2.86176 3.19270 3.52806 3.70630 3.91159 3.95922 4.07125 4.11000 4.12715 4.20646 4.28880 4.42753 4.51814 4.53259 4.55963 4.60758 4.74343 4.76156 4.81035 4.82309 4.87768 4.98284 5.05515 5.06072 5.11017 5.14919 5.15560 5.27894 5.31894 5.43704 5.47402 5.58194 5.72311 5.73840 5.80029 5.83430 5.95793 6.03233 6.24844 6.79247 6.97285 7.50834 7.79104 8.76358 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.002132 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.466463 B =13127.620925 C =13477.897770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C -0.096 4.096 4 C -0.103 4.103 5 C 0.174 3.826 6 C -0.164 4.164 7 C -0.164 4.164 8 N -0.715 5.715 9 C 0.511 3.489 10 O -0.568 6.568 11 C -0.080 4.080 12 C -0.141 4.141 13 C -0.061 4.061 14 C -0.244 4.244 15 C 0.111 3.889 16 O -0.235 6.235 17 C -0.414 4.414 18 H 0.100 0.900 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.207 4.207 26 C -0.058 4.058 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.415 0.585 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.137 0.863 44 H 0.116 0.884 45 H 0.273 0.727 46 H 0.111 0.889 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.819 -25.648 -2.650 31.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.174 4.174 3 C -0.133 4.133 4 C -0.141 4.141 5 C 0.089 3.911 6 C -0.222 4.222 7 C -0.222 4.222 8 N -0.369 5.369 9 C 0.299 3.701 10 O -0.446 6.446 11 C -0.120 4.120 12 C -0.142 4.142 13 C -0.079 4.079 14 C -0.263 4.263 15 C 0.061 3.939 16 O -0.142 6.142 17 C -0.490 4.490 18 H 0.117 0.883 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.226 4.226 26 C -0.076 4.076 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.252 0.748 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.129 0.871 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -18.516 -24.762 -3.338 31.099 hybrid contribution 0.198 0.956 0.414 1.061 sum -18.318 -23.805 -2.924 30.179 Atomic orbital electron populations 1.24011 0.96233 1.02276 1.01403 1.23036 0.96080 0.98625 0.99677 1.20864 0.98089 0.95736 0.98656 1.21676 0.97980 0.94831 0.99641 1.20299 0.88718 0.96139 0.85978 1.22241 0.98872 0.98780 1.02297 1.22239 1.00760 1.02022 0.97137 1.46048 1.40361 1.19744 1.30754 1.21043 0.80884 0.81951 0.86263 1.90708 1.68602 1.37088 1.48234 1.20547 0.97624 0.95852 0.97939 1.19254 0.96509 0.96070 1.02400 1.20918 0.98234 0.91307 0.97420 1.21220 0.97487 1.00205 1.07436 1.19937 0.92089 0.86894 0.94987 1.83935 1.50465 1.18918 1.60837 1.21817 1.07792 0.93399 1.26024 0.88308 1.26621 0.95771 1.00515 0.99275 1.70189 1.15736 1.27343 1.42702 0.84572 0.78840 0.75405 0.77271 1.18531 1.19487 1.17863 1.20438 1.02952 0.92672 1.06546 1.20863 0.94254 0.95776 0.96675 0.88717 0.87801 0.86514 0.91289 0.90393 0.89776 0.90366 0.93827 0.90792 0.92239 0.91937 0.90733 0.93824 0.74780 0.85409 0.85715 0.84558 0.86613 0.91847 0.87106 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.91 14.32 67.77 0.97 -0.94 16 2 C -0.16 -1.43 9.52 25.64 0.24 -1.19 16 3 C -0.10 -0.94 4.95 29.85 0.15 -0.80 16 4 C -0.10 -0.96 4.37 30.60 0.13 -0.83 16 5 C 0.17 2.72 0.83 3.60 0.00 2.73 16 6 C -0.16 -3.18 8.05 71.98 0.58 -2.60 16 7 C -0.16 -3.08 8.05 71.98 0.58 -2.50 16 8 N -0.72 -10.84 5.10 -422.92 -2.16 -13.00 16 9 C 0.51 11.95 7.24 87.66 0.63 12.59 16 10 O -0.57 -19.57 12.24 -3.05 -0.04 -19.61 16 11 C -0.08 -1.59 5.83 29.10 0.17 -1.43 16 12 C -0.14 -4.55 4.38 -19.84 -0.09 -4.64 16 13 C -0.06 -2.24 9.69 22.25 0.22 -2.03 16 14 C -0.24 -11.44 9.17 22.39 0.21 -11.23 16 15 C 0.11 5.91 6.65 22.58 0.15 6.06 16 16 O -0.23 -14.90 9.76 -22.72 -0.22 -15.12 16 17 C -0.41 -25.26 9.49 67.92 0.64 -24.61 16 18 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 19 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 20 N -0.92 -58.34 13.67 21.62 0.30 -58.05 16 21 Si 1.02 44.40 29.55 68.60 2.03 46.42 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 25 C -0.21 -9.48 9.99 22.39 0.22 -9.26 16 26 C -0.06 -2.07 9.69 22.25 0.22 -1.85 16 27 H 0.09 0.89 7.84 -2.91 -0.02 0.87 16 28 H 0.10 0.78 8.06 -2.91 -0.02 0.76 16 29 H 0.12 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.07 0.74 6.08 -2.39 -0.01 0.73 16 31 H 0.08 0.79 6.43 -2.39 -0.02 0.77 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.04 1.21 6.17 -2.39 -0.01 1.19 16 35 H 0.07 1.22 6.43 -2.39 -0.02 1.20 16 36 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.18 6.43 -2.39 -0.02 1.17 16 39 H 0.04 1.19 6.17 -2.38 -0.01 1.17 16 40 H 0.42 3.20 8.47 -92.70 -0.79 2.41 16 41 H 0.13 1.72 8.08 -2.39 -0.02 1.70 16 42 H 0.12 1.75 8.08 -2.39 -0.02 1.73 16 43 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 44 H 0.12 5.51 5.64 -2.91 -0.02 5.49 16 45 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 46 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 47 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -81.76 381.55 5.59 -76.18 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.19 Total: 26.68 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 5.50 Total: -43.51 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.86 Total: -71.04 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.26 Total: -34.73 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -81.76 5.59 -76.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856374187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.801 kcal (2) G-P(sol) polarization free energy of solvation -81.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds