Wall clock time and date at job start Tue Mar 31 2020 12:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 119.99692 * 2 1 4 4 N 1.46494 * 109.46907 * 123.72902 * 3 2 1 5 5 C 1.46505 * 119.99748 * 276.41009 * 4 3 2 6 6 C 1.50700 * 109.47003 * 270.00285 * 5 4 3 7 7 H 1.08002 * 120.00393 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00054 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99660 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00131 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47071 * 60.00197 * 10 8 6 12 12 H 1.48500 * 109.46850 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46814 * 300.00017 * 10 8 6 14 14 C 1.34776 * 120.00506 * 96.41569 * 4 3 2 15 15 O 1.21282 * 120.00210 * 184.56864 * 14 4 3 16 16 C 1.50704 * 119.99360 * 4.56531 * 14 4 3 17 17 C 1.52998 * 109.46954 * 297.70484 * 16 14 4 18 18 C 1.53004 * 109.46564 * 177.70667 * 16 14 4 19 19 C 1.50695 * 109.47399 * 57.71100 * 16 14 4 20 20 C 1.38291 * 119.97389 * 7.16588 * 19 16 14 21 21 C 1.38243 * 120.11354 * 180.02562 * 20 19 16 22 22 C 1.38170 * 120.05344 * 359.67163 * 21 20 19 23 23 C 1.38714 * 119.94317 * 0.62406 * 22 21 20 24 24 O 1.35899 * 120.05565 * 179.67541 * 23 22 21 25 25 C 1.42900 * 116.99722 * 359.72385 * 24 23 22 26 26 C 1.38124 * 119.97264 * 187.19279 * 19 16 14 27 27 H 1.08003 * 120.00447 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99424 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00515 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46877 * 3.72673 * 3 2 1 31 31 H 1.09002 * 109.46583 * 243.72613 * 3 2 1 32 32 H 1.08997 * 109.47217 * 29.99886 * 5 4 3 33 33 H 1.08999 * 109.47079 * 150.00382 * 5 4 3 34 34 H 0.97003 * 120.00055 * 180.02562 * 9 8 6 35 35 H 1.09009 * 109.46958 * 192.09228 * 17 16 14 36 36 H 1.08995 * 109.47469 * 312.09130 * 17 16 14 37 37 H 1.08994 * 109.46988 * 72.09652 * 17 16 14 38 38 H 1.08993 * 109.47277 * 304.58146 * 18 16 14 39 39 H 1.09003 * 109.47174 * 64.58164 * 18 16 14 40 40 H 1.09001 * 109.47152 * 184.57710 * 18 16 14 41 41 H 1.08006 * 119.93951 * 0.02562 * 20 19 16 42 42 H 1.07998 * 119.97121 * 179.97438 * 21 20 19 43 43 H 1.07995 * 120.02832 * 180.29787 * 22 21 20 44 44 H 1.08994 * 109.47632 * 300.00106 * 25 24 23 45 45 H 1.09003 * 109.47009 * 60.00318 * 25 24 23 46 46 H 1.08998 * 109.47230 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.02726 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9718 1.3447 1.1487 5 6 2.4737 1.7599 2.4624 6 6 2.6278 3.2517 2.6095 7 1 3.0538 3.8326 1.8048 8 6 2.2241 3.8753 3.7711 9 7 1.7050 3.1681 4.7508 10 14 2.4145 5.7247 3.9531 11 1 1.6369 6.4095 2.8895 12 1 1.9098 6.1455 5.2848 13 1 3.8489 6.0891 3.8302 14 6 4.2656 0.9991 0.9970 15 8 4.9979 0.9517 1.9627 16 6 4.8024 0.6716 -0.3726 17 6 4.0709 -0.5523 -0.9276 18 6 6.2993 0.3703 -0.2750 19 6 4.5853 1.8461 -1.2914 20 6 4.1094 3.0414 -0.7841 21 6 3.9087 4.1206 -1.6245 22 6 4.1896 4.0094 -2.9727 23 6 4.6612 2.8097 -3.4851 24 8 4.9319 2.6957 -4.8119 25 6 4.7022 3.8501 -5.6223 26 6 4.8611 1.7278 -2.6396 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3570 2.1325 0.0668 31 1 2.6391 1.3924 -0.9215 32 1 1.4208 1.4928 2.5528 33 1 3.0445 1.2569 3.2430 34 1 1.4206 3.6068 5.5679 35 1 4.5947 -0.9191 -1.8105 36 1 4.0448 -1.3348 -0.1694 37 1 3.0524 -0.2748 -1.1987 38 1 6.8091 1.2109 0.1956 39 1 6.4509 -0.5279 0.3237 40 1 6.7042 0.2132 -1.2747 41 1 3.8943 3.1319 0.2704 42 1 3.5367 5.0529 -1.2259 43 1 4.0372 4.8542 -3.6280 44 1 3.6516 4.1338 -5.5611 45 1 5.3221 4.6730 -5.2665 46 1 4.9573 3.6239 -6.6576 47 1 5.2319 0.7938 -3.0355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868510643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:25 Heat of formation + Delta-G solvation = -9.942221 kcal Electronic energy + Delta-G solvation = -28168.575404 eV Core-core repulsion = 24511.224557 eV Total energy + Delta-G solvation = -3657.350847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89466 -39.48325 -37.27922 -35.76639 -34.71499 -33.10489 -32.06146 -30.54054 -29.48001 -27.90015 -27.30940 -26.84429 -25.54926 -24.12311 -22.55101 -22.01847 -20.59661 -19.95114 -18.45370 -17.57168 -16.69403 -16.29789 -15.94995 -15.78786 -15.65491 -15.55821 -14.85970 -14.48792 -14.18610 -13.83046 -13.56811 -13.35469 -13.28495 -13.06385 -12.60670 -12.39567 -12.37689 -12.12950 -12.06726 -11.65961 -11.49585 -11.47036 -11.24710 -11.17795 -11.12073 -11.00117 -10.90522 -10.58775 -10.56055 -10.43784 -10.14436 -9.64528 -9.14224 -8.83854 -8.64056 -8.43286 -8.01787 -7.62716 -6.04491 -4.09754 1.38589 1.59820 2.50602 3.15919 3.30106 3.35314 3.36559 3.45511 3.86183 4.00179 4.43320 4.72281 4.80697 4.89339 4.99250 5.04325 5.13532 5.21639 5.28494 5.29533 5.30199 5.38083 5.48405 5.54506 5.64015 5.69773 5.75488 5.76999 5.91563 6.01198 6.05998 6.10579 6.14883 6.22464 6.32409 6.39900 6.49939 6.68424 6.79836 6.85290 6.86766 6.98184 7.13768 7.41570 7.47841 7.57865 7.92440 8.22453 8.42604 8.88201 9.08715 9.55335 11.03419 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.005052 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.935687 B = 5540.723644 C = 6389.239889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.171 4.171 3 C 0.121 3.879 4 N -0.589 5.589 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.519 3.481 15 O -0.535 6.535 16 C -0.046 4.046 17 C -0.154 4.154 18 C -0.121 4.121 19 C -0.033 4.033 20 C -0.150 4.150 21 C -0.077 4.077 22 C -0.211 4.211 23 C 0.118 3.882 24 O -0.320 6.320 25 C 0.029 3.971 26 C -0.144 4.144 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.153 0.847 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.096 0.904 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 -2.838 -19.290 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.190 4.190 3 C -0.002 4.002 4 N -0.319 5.319 5 C 0.127 3.873 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.138 4.138 9 N -0.531 5.531 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.305 3.695 15 O -0.412 6.412 16 C -0.049 4.049 17 C -0.211 4.211 18 C -0.178 4.178 19 C -0.033 4.033 20 C -0.168 4.168 21 C -0.095 4.095 22 C -0.229 4.229 23 C 0.074 3.926 24 O -0.234 6.234 25 C -0.066 4.066 26 C -0.162 4.162 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.171 0.829 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.114 0.886 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.743 -2.996 -18.654 19.091 hybrid contribution -0.193 1.410 0.156 1.431 sum 2.550 -1.586 -18.498 18.740 Atomic orbital electron populations 1.23822 0.95906 1.01651 1.00697 1.23593 0.96366 0.99286 0.99778 1.21062 0.93614 0.95006 0.90523 1.48189 1.07738 1.64389 1.11610 1.19280 0.94901 0.94981 0.78145 1.21391 1.41541 0.92441 1.01297 0.92362 1.24903 0.95071 0.98318 0.95549 1.69923 1.41613 1.35712 1.05840 0.86626 0.78590 0.85376 0.77264 1.20240 1.21179 1.20145 1.20032 0.82571 0.77374 0.89534 1.90667 1.57088 1.52468 1.41000 1.19831 0.98125 0.94167 0.92787 1.22385 1.01640 0.96036 1.01079 1.21642 0.91985 1.02880 1.01304 1.19331 0.96939 0.94536 0.92511 1.21887 0.99943 0.92233 1.02731 1.20970 0.97313 0.98808 0.92389 1.21210 1.07538 0.97159 0.97024 1.18873 0.96764 0.94180 0.82822 1.86035 1.82711 1.38088 1.16594 1.22999 1.01050 0.87882 0.94691 1.20084 1.06346 0.98067 0.91739 0.88415 0.88835 0.87253 0.90037 0.88901 0.94944 0.93824 0.92671 0.91757 0.91801 0.90041 0.91680 0.91677 0.92329 0.82938 0.85636 0.85872 0.92746 0.92810 0.88560 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 14.32 29.01 0.42 -2.09 16 2 C -0.17 -2.55 8.21 -36.02 -0.30 -2.85 16 3 C 0.12 2.06 3.98 -5.19 -0.02 2.04 16 4 N -0.59 -12.27 1.43 -176.43 -0.25 -12.52 16 5 C 0.25 6.34 5.21 -5.19 -0.03 6.31 16 6 C -0.53 -14.48 9.28 -34.44 -0.32 -14.80 16 7 H 0.06 1.56 6.01 -52.49 -0.32 1.24 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 10 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.52 10.78 5.18 -10.98 -0.06 10.72 16 15 O -0.54 -13.42 15.51 5.56 0.09 -13.33 16 16 C -0.05 -0.72 0.59 -156.81 -0.09 -0.82 16 17 C -0.15 -2.00 6.66 37.16 0.25 -1.75 16 18 C -0.12 -1.79 7.69 37.16 0.29 -1.50 16 19 C -0.03 -0.50 3.01 -104.65 -0.32 -0.82 16 20 C -0.15 -2.55 7.06 -39.56 -0.28 -2.83 16 21 C -0.08 -1.13 10.04 -39.60 -0.40 -1.53 16 22 C -0.21 -2.70 9.04 -39.43 -0.36 -3.06 16 23 C 0.12 1.56 6.69 -39.22 -0.26 1.30 16 24 O -0.32 -3.80 10.50 -19.42 -0.20 -4.00 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 C -0.14 -1.95 8.70 -39.43 -0.34 -2.29 16 27 H 0.10 1.33 7.84 -52.48 -0.41 0.92 16 28 H 0.09 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.11 1.53 6.40 -52.49 -0.34 1.19 16 30 H 0.08 1.45 7.77 -51.93 -0.40 1.05 16 31 H 0.09 1.44 3.07 -51.93 -0.16 1.28 16 32 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 0.68 7.46 -51.92 -0.39 0.29 16 36 H 0.06 0.83 7.93 -51.93 -0.41 0.42 16 37 H 0.08 1.03 3.65 -51.93 -0.19 0.84 16 38 H 0.06 1.08 8.00 -51.93 -0.42 0.66 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.71 7.71 -51.93 -0.40 0.31 16 41 H 0.15 3.13 3.67 -52.48 -0.19 2.94 16 42 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 43 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 44 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 45 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.13 1.54 7.31 -52.49 -0.38 1.15 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -32.12 367.09 -6.81 -38.92 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.76 Total: 5.49 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.92 Total: -11.04 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.48 Total: -38.04 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.12 Total: -17.34 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.12 -6.81 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868510643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.983 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds