Wall clock time and date at job start Tue Mar 31 2020 12:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50711 * 119.99692 * 2 1 4 4 N 1.46494 * 109.46907 * 123.72902 * 3 2 1 5 5 C 1.46505 * 119.99748 * 276.41009 * 4 3 2 6 6 C 1.50700 * 109.47003 * 270.00285 * 5 4 3 7 7 H 1.08002 * 120.00393 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00054 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99660 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00131 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47071 * 60.00197 * 10 8 6 12 12 H 1.48500 * 109.46850 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46814 * 300.00017 * 10 8 6 14 14 C 1.34776 * 120.00506 * 96.41569 * 4 3 2 15 15 O 1.21282 * 120.00210 * 184.56864 * 14 4 3 16 16 C 1.50704 * 119.99360 * 4.56531 * 14 4 3 17 17 C 1.52998 * 109.46954 * 297.70484 * 16 14 4 18 18 C 1.53004 * 109.46564 * 177.70667 * 16 14 4 19 19 C 1.50695 * 109.47399 * 57.71100 * 16 14 4 20 20 C 1.38291 * 119.97389 * 7.16588 * 19 16 14 21 21 C 1.38243 * 120.11354 * 180.02562 * 20 19 16 22 22 C 1.38170 * 120.05344 * 359.67163 * 21 20 19 23 23 C 1.38714 * 119.94317 * 0.62406 * 22 21 20 24 24 O 1.35899 * 120.05565 * 179.67541 * 23 22 21 25 25 C 1.42900 * 116.99722 * 359.72385 * 24 23 22 26 26 C 1.38124 * 119.97264 * 187.19279 * 19 16 14 27 27 H 1.08003 * 120.00447 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.99424 * 179.97438 * 1 2 3 29 29 H 1.07993 * 120.00515 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46877 * 3.72673 * 3 2 1 31 31 H 1.09002 * 109.46583 * 243.72613 * 3 2 1 32 32 H 1.08997 * 109.47217 * 29.99886 * 5 4 3 33 33 H 1.08999 * 109.47079 * 150.00382 * 5 4 3 34 34 H 0.97003 * 120.00055 * 180.02562 * 9 8 6 35 35 H 1.09009 * 109.46958 * 192.09228 * 17 16 14 36 36 H 1.08995 * 109.47469 * 312.09130 * 17 16 14 37 37 H 1.08994 * 109.46988 * 72.09652 * 17 16 14 38 38 H 1.08993 * 109.47277 * 304.58146 * 18 16 14 39 39 H 1.09003 * 109.47174 * 64.58164 * 18 16 14 40 40 H 1.09001 * 109.47152 * 184.57710 * 18 16 14 41 41 H 1.08006 * 119.93951 * 0.02562 * 20 19 16 42 42 H 1.07998 * 119.97121 * 179.97438 * 21 20 19 43 43 H 1.07995 * 120.02832 * 180.29787 * 22 21 20 44 44 H 1.08994 * 109.47632 * 300.00106 * 25 24 23 45 45 H 1.09003 * 109.47009 * 60.00318 * 25 24 23 46 46 H 1.08998 * 109.47230 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.02726 * 0.02562 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9718 1.3447 1.1487 5 6 2.4737 1.7599 2.4624 6 6 2.6278 3.2517 2.6095 7 1 3.0538 3.8326 1.8048 8 6 2.2241 3.8753 3.7711 9 7 1.7050 3.1681 4.7508 10 14 2.4145 5.7247 3.9531 11 1 1.6369 6.4095 2.8895 12 1 1.9098 6.1455 5.2848 13 1 3.8489 6.0891 3.8302 14 6 4.2656 0.9991 0.9970 15 8 4.9979 0.9517 1.9627 16 6 4.8024 0.6716 -0.3726 17 6 4.0709 -0.5523 -0.9276 18 6 6.2993 0.3703 -0.2750 19 6 4.5853 1.8461 -1.2914 20 6 4.1094 3.0414 -0.7841 21 6 3.9087 4.1206 -1.6245 22 6 4.1896 4.0094 -2.9727 23 6 4.6612 2.8097 -3.4851 24 8 4.9319 2.6957 -4.8119 25 6 4.7022 3.8501 -5.6223 26 6 4.8611 1.7278 -2.6396 27 1 -0.5401 0.9353 -0.0004 28 1 -0.5399 -0.9354 -0.0004 29 1 1.8500 -0.9352 -0.0004 30 1 1.3570 2.1325 0.0668 31 1 2.6391 1.3924 -0.9215 32 1 1.4208 1.4928 2.5528 33 1 3.0445 1.2569 3.2430 34 1 1.4206 3.6068 5.5679 35 1 4.5947 -0.9191 -1.8105 36 1 4.0448 -1.3348 -0.1694 37 1 3.0524 -0.2748 -1.1987 38 1 6.8091 1.2109 0.1956 39 1 6.4509 -0.5279 0.3237 40 1 6.7042 0.2132 -1.2747 41 1 3.8943 3.1319 0.2704 42 1 3.5367 5.0529 -1.2259 43 1 4.0372 4.8542 -3.6280 44 1 3.6516 4.1338 -5.5611 45 1 5.3221 4.6730 -5.2665 46 1 4.9573 3.6239 -6.6576 47 1 5.2319 0.7938 -3.0355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868510643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:24 Heat of formation + Delta-G solvation = -28.239293 kcal Electronic energy + Delta-G solvation = -28169.368824 eV Core-core repulsion = 24511.224557 eV Total energy + Delta-G solvation = -3658.144268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21313 -40.61294 -38.49701 -37.34292 -36.03340 -34.93097 -33.72363 -31.59138 -30.59161 -29.72232 -28.17291 -27.99571 -26.97007 -25.78559 -24.05150 -23.12263 -22.00416 -21.18831 -19.64150 -19.06040 -18.56861 -17.54348 -17.35675 -17.00332 -16.82528 -16.58632 -16.35422 -16.16692 -15.43605 -15.15139 -14.92726 -14.61879 -14.42605 -14.34711 -14.20771 -13.89692 -13.48171 -13.32201 -13.18194 -13.11686 -13.01400 -12.81428 -12.74136 -12.64034 -12.56611 -12.35012 -12.21784 -12.08004 -12.03641 -11.78541 -11.56472 -11.51551 -10.63683 -10.50693 -10.34562 -9.75168 -9.41335 -9.09219 -8.21397 -6.35669 0.29883 0.48398 1.30543 1.34776 1.39041 1.45809 1.76729 2.33043 2.38419 2.49727 2.75807 3.08399 3.48460 3.60270 3.89774 4.02942 4.06844 4.12045 4.16527 4.25028 4.36571 4.41323 4.45383 4.46384 4.56563 4.63322 4.71946 4.79856 4.81168 4.85033 4.89019 4.92345 5.04492 5.06182 5.08489 5.20565 5.25783 5.31921 5.33209 5.47815 5.58891 5.66578 5.69576 5.75302 5.78128 5.96556 6.07016 6.48637 6.70064 6.77240 7.28050 7.45252 8.85803 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011601 B = 0.005052 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.935687 B = 5540.723644 C = 6389.239889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.190 4.190 3 C 0.125 3.875 4 N -0.587 5.587 5 C 0.264 3.736 6 C -0.539 4.539 7 H 0.059 0.941 8 C 0.010 3.990 9 N -0.928 5.928 10 Si 0.962 3.038 11 H -0.259 1.259 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.511 3.489 15 O -0.593 6.593 16 C -0.036 4.036 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.036 4.036 20 C -0.179 4.179 21 C -0.083 4.083 22 C -0.203 4.203 23 C 0.124 3.876 24 O -0.327 6.327 25 C 0.017 3.983 26 C -0.139 4.139 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.019 0.981 33 H -0.004 1.004 34 H 0.266 0.734 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.121 0.879 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 -2.507 -23.262 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.209 4.209 3 C 0.003 3.997 4 N -0.316 5.316 5 C 0.143 3.857 6 C -0.577 4.577 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.568 5.568 10 Si 0.786 3.214 11 H -0.183 1.183 12 H -0.205 1.205 13 H -0.203 1.203 14 C 0.300 3.700 15 O -0.474 6.474 16 C -0.040 4.040 17 C -0.208 4.208 18 C -0.175 4.175 19 C -0.037 4.037 20 C -0.198 4.198 21 C -0.101 4.101 22 C -0.221 4.221 23 C 0.079 3.921 24 O -0.241 6.241 25 C -0.077 4.077 26 C -0.157 4.157 27 H 0.113 0.887 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.037 0.963 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.146 0.854 43 H 0.170 0.830 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.139 0.861 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.652 -2.666 -22.686 22.996 hybrid contribution -0.185 1.327 1.297 1.865 sum 2.467 -1.339 -21.390 21.573 Atomic orbital electron populations 1.24062 0.95538 1.02812 0.98218 1.23532 0.96855 0.98540 1.01951 1.21184 0.93040 0.95882 0.89570 1.48084 1.08759 1.63919 1.10866 1.18694 0.93142 0.94040 0.79839 1.21686 1.41200 0.93298 1.01556 0.92246 1.25809 0.94620 1.03303 0.95135 1.70055 1.42580 1.37741 1.06386 0.85559 0.78454 0.79522 0.77880 1.18311 1.20474 1.20347 1.21028 0.81827 0.75883 0.91267 1.90622 1.58318 1.54984 1.43459 1.19798 0.98728 0.95930 0.89500 1.22413 1.01914 0.94310 1.02170 1.21662 0.91158 1.01604 1.03116 1.19184 0.97709 0.93484 0.93313 1.21594 1.02906 0.94249 1.01021 1.21028 0.97533 0.98273 0.93262 1.21434 1.06251 0.98202 0.96234 1.18962 0.95558 0.93861 0.83708 1.86040 1.82331 1.40010 1.15732 1.23345 1.01980 0.87056 0.95307 1.20204 1.05635 0.99306 0.90583 0.88695 0.86210 0.85987 0.91558 0.87005 0.96340 0.98608 0.92509 0.88153 0.92199 0.89693 0.94343 0.91960 0.88609 0.87228 0.85386 0.83019 0.91767 0.91994 0.86103 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.40 14.32 67.78 0.97 -3.43 16 2 C -0.19 -5.56 8.21 25.65 0.21 -5.35 16 3 C 0.13 4.33 3.98 85.64 0.34 4.67 16 4 N -0.59 -25.91 1.43 -830.49 -1.19 -27.10 16 5 C 0.26 14.62 5.21 85.63 0.45 15.07 16 6 C -0.54 -31.18 9.28 25.60 0.24 -30.94 16 7 H 0.06 3.36 6.01 -2.91 -0.02 3.34 16 8 C 0.01 0.60 5.46 84.66 0.46 1.06 16 9 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 10 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 11 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 14 C 0.51 22.41 5.18 87.66 0.45 22.87 16 15 O -0.59 -32.02 15.51 -3.03 -0.05 -32.07 16 16 C -0.04 -1.14 0.59 -53.67 -0.03 -1.17 16 17 C -0.15 -3.60 6.66 71.98 0.48 -3.12 16 18 C -0.12 -3.44 7.69 71.98 0.55 -2.89 16 19 C -0.04 -1.08 3.01 -19.88 -0.06 -1.14 16 20 C -0.18 -6.19 7.06 22.28 0.16 -6.03 16 21 C -0.08 -2.38 10.04 22.25 0.22 -2.16 16 22 C -0.20 -4.64 9.04 22.37 0.20 -4.44 16 23 C 0.12 2.85 6.69 22.51 0.15 3.00 16 24 O -0.33 -6.39 10.50 -92.42 -0.97 -7.36 16 25 C 0.02 0.20 9.81 113.37 1.11 1.31 16 26 C -0.14 -3.33 8.70 22.37 0.19 -3.14 16 27 H 0.09 2.52 7.84 -2.91 -0.02 2.50 16 28 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.12 3.26 6.40 -2.91 -0.02 3.24 16 30 H 0.07 2.46 7.77 -2.39 -0.02 2.44 16 31 H 0.11 3.44 3.07 -2.39 -0.01 3.43 16 32 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 33 H 0.00 -0.27 7.36 -2.39 -0.02 -0.29 16 34 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.10 1.69 7.46 -2.38 -0.02 1.67 16 36 H 0.06 1.48 7.93 -2.39 -0.02 1.46 16 37 H 0.08 1.97 3.65 -2.39 -0.01 1.96 16 38 H 0.04 1.30 8.00 -2.39 -0.02 1.28 16 39 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 2.04 7.71 -2.39 -0.02 2.02 16 41 H 0.11 4.78 3.67 -2.91 -0.01 4.77 16 42 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 43 H 0.15 2.53 6.30 -2.91 -0.02 2.52 16 44 H 0.06 0.64 7.67 -2.39 -0.02 0.62 16 45 H 0.06 0.63 7.65 -2.39 -0.02 0.61 16 46 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.15 2.91 7.31 -2.91 -0.02 2.89 16 Total: -1.00 -75.28 367.09 7.18 -68.10 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.97 Total: 23.60 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 6.10 Total: -15.82 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -0.90 Total: -83.66 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.02 Total: -39.42 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -75.28 7.18 -68.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868510643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.857 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds