Wall clock time and date at job start Tue Mar 31 2020 12:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47044 * 2 1 4 4 O 1.42903 * 109.49857 * 65.00072 * 3 2 1 5 5 C 1.53042 * 109.49314 * 185.06334 * 3 2 1 6 6 C 1.53044 * 109.53215 * 181.31388 * 5 3 2 7 7 C 1.53189 * 109.31787 * 298.63452 * 6 5 3 8 8 N 1.46926 * 108.77472 * 54.63571 * 7 6 5 9 9 C 1.34778 * 120.63488 * 126.38939 * 8 7 6 10 10 O 1.21275 * 120.00573 * 180.02562 * 9 8 7 11 11 C 1.50700 * 119.99564 * 0.02562 * 9 8 7 12 12 C 1.50697 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12501 * 264.72080 * 12 11 9 14 14 C 1.38617 * 120.24420 * 179.74162 * 13 12 11 15 15 C 1.38659 * 120.50194 * 0.51811 * 14 13 12 16 16 C 1.37596 * 120.24717 * 359.76708 * 15 14 13 17 17 C 1.40696 * 120.12982 * 85.00145 * 12 11 9 18 18 C 1.41402 * 120.24425 * 0.02562 * 17 12 11 19 19 H 1.07994 * 119.99775 * 334.05656 * 18 17 12 20 20 C 1.39938 * 119.99951 * 154.05147 * 18 17 12 21 21 N 1.30824 * 120.00205 * 343.66434 * 20 18 17 22 22 Si 1.86797 * 120.00114 * 163.66295 * 20 18 17 23 23 H 1.48499 * 109.47404 * 89.99919 * 22 20 18 24 24 H 1.48505 * 109.47392 * 210.00038 * 22 20 18 25 25 H 1.48500 * 109.47077 * 330.00359 * 22 20 18 26 26 C 1.46941 * 118.76707 * 306.41680 * 8 7 6 27 27 H 1.09000 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47136 * 59.99817 * 1 2 3 29 29 H 1.09006 * 109.47243 * 300.00299 * 1 2 3 30 30 H 1.08999 * 109.46698 * 119.99909 * 2 1 3 31 31 H 1.08999 * 109.46890 * 239.99819 * 2 1 3 32 32 H 0.96702 * 113.99380 * 299.99830 * 4 3 2 33 33 H 1.08993 * 109.46101 * 301.33240 * 5 3 2 34 34 H 1.08996 * 109.46034 * 61.31119 * 5 3 2 35 35 H 1.09001 * 109.49725 * 58.59386 * 6 5 3 36 36 H 1.09002 * 109.49764 * 178.64949 * 6 5 3 37 37 H 1.08996 * 109.58932 * 174.42437 * 7 6 5 38 38 H 1.08999 * 109.58880 * 294.71304 * 7 6 5 39 39 H 1.09002 * 109.47237 * 299.99736 * 11 9 8 40 40 H 1.09000 * 109.47234 * 59.99703 * 11 9 8 41 41 H 1.07990 * 119.87778 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.74530 * 180.25979 * 14 13 12 43 43 H 1.07998 * 119.87429 * 179.74379 * 15 14 13 44 44 H 1.08005 * 120.12528 * 180.02562 * 16 15 14 45 45 H 0.97008 * 120.00417 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.55552 * 293.78374 * 26 8 7 47 47 H 1.09000 * 109.61903 * 173.35700 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6622 2.0820 1.2209 5 6 3.5651 1.4450 -0.1273 6 6 4.0790 2.8863 -0.0945 7 6 3.4936 3.6601 -1.2799 8 7 2.0296 3.5406 -1.2460 9 6 1.2500 4.6398 -1.2709 10 8 0.0428 4.5279 -1.2420 11 6 1.8786 6.0079 -1.3346 12 6 0.7971 7.0573 -1.3521 13 6 0.3539 7.5725 -2.5490 14 6 -0.6445 8.5340 -2.5682 15 6 -1.2003 8.9953 -1.3846 16 6 -0.7684 8.4985 -0.1763 17 6 0.2408 7.5183 -0.1449 18 6 0.6928 7.0009 1.0910 19 1 1.1228 6.0113 1.1373 20 6 0.5832 7.7712 2.2542 21 7 0.3703 9.0592 2.1681 22 14 0.7406 6.9605 3.9297 23 1 2.1637 6.9726 4.3537 24 1 -0.0771 7.7068 4.9195 25 1 0.2605 5.5577 3.8479 26 6 1.4307 2.2002 -1.1839 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 0.7070 2.1173 1.3671 33 1 3.9996 0.8856 0.7011 34 1 3.8515 0.9790 -1.0701 35 1 3.7717 3.3609 0.8374 36 1 5.1669 2.8862 -0.1611 37 1 3.7763 4.7102 -1.2062 38 1 3.8747 3.2436 -2.2123 39 1 2.5152 6.1563 -0.4624 40 1 2.4789 6.0902 -2.2407 41 1 0.7823 7.2232 -3.4767 42 1 -0.9892 8.9297 -3.5121 43 1 -1.9747 9.7476 -1.4112 44 1 -1.2030 8.8590 0.7444 45 1 0.2946 9.5933 2.9744 46 1 1.6413 1.6633 -2.1087 47 1 0.3529 2.2869 -1.0466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870680034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:12 Heat of formation + Delta-G solvation = -79.679240 kcal Electronic energy + Delta-G solvation = -27954.218137 eV Core-core repulsion = 24293.843266 eV Total energy + Delta-G solvation = -3660.374871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.22643 -38.40389 -37.12341 -35.43751 -33.55322 -33.02919 -32.16117 -31.66098 -29.42470 -29.15561 -27.04406 -25.33167 -24.52697 -24.28775 -21.51341 -20.87438 -20.45534 -19.77120 -18.50752 -17.07909 -16.72208 -16.67179 -15.61862 -15.30870 -15.23349 -14.59801 -14.50290 -14.42171 -13.97472 -13.74163 -13.40306 -13.24755 -13.20790 -12.69994 -12.58684 -12.48375 -12.41891 -12.00605 -11.71212 -11.50450 -11.46085 -11.15301 -11.11672 -11.02972 -10.98633 -10.92336 -10.86244 -10.62528 -10.33705 -10.31864 -9.94820 -9.42044 -9.29660 -9.09346 -9.04190 -8.20285 -7.25191 -7.22120 -6.67210 -4.26934 2.84478 3.01315 3.12004 3.19032 3.33011 3.35388 3.48502 4.00741 4.24881 4.50583 4.66980 4.72631 4.77570 5.00379 5.06223 5.11796 5.18845 5.39716 5.47321 5.50954 5.63218 5.67958 5.74319 5.78778 5.81017 5.83050 5.90863 5.97099 6.03237 6.06541 6.13927 6.24532 6.33605 6.40177 6.49319 6.56587 6.82805 6.89729 7.16054 7.35816 7.48583 7.69929 7.75266 7.87192 7.99767 8.14732 8.19300 8.38439 8.72012 8.89865 8.99148 9.08358 10.26974 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.005058 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.239814 B = 5534.829347 C = 6647.001056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.146 4.146 3 C 0.118 3.882 4 O -0.548 6.548 5 C -0.102 4.102 6 C -0.134 4.134 7 C 0.109 3.891 8 N -0.618 5.618 9 C 0.522 3.478 10 O -0.524 6.524 11 C -0.068 4.068 12 C -0.181 4.181 13 C -0.082 4.082 14 C -0.241 4.241 15 C -0.107 4.107 16 C -0.160 4.160 17 C 0.129 3.871 18 C -0.454 4.454 19 H 0.075 0.925 20 C 0.077 3.923 21 N -0.796 5.796 22 Si 0.901 3.099 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.260 1.260 26 C 0.088 3.912 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.376 0.624 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.064 0.936 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.964 -14.595 -3.362 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.185 4.185 3 C 0.077 3.923 4 O -0.354 6.354 5 C -0.139 4.139 6 C -0.172 4.172 7 C -0.014 4.014 8 N -0.354 5.354 9 C 0.312 3.688 10 O -0.398 6.398 11 C -0.108 4.108 12 C -0.183 4.183 13 C -0.100 4.100 14 C -0.260 4.260 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.127 3.873 18 C -0.483 4.483 19 H 0.093 0.907 20 C -0.140 4.140 21 N -0.422 5.422 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.036 4.036 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.224 0.776 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.912 -14.347 -3.141 16.231 hybrid contribution -0.479 -0.435 0.729 0.975 sum 6.432 -14.782 -2.412 16.300 Atomic orbital electron populations 1.21879 0.95438 1.02083 1.02503 1.22169 0.96681 0.96804 1.02820 1.21564 0.95233 0.90480 0.85066 1.86542 1.28610 1.81063 1.39213 1.21472 0.92785 0.97691 1.01994 1.21863 0.99723 0.95495 1.00154 1.21676 0.80125 1.01923 0.97676 1.48081 1.06309 1.05459 1.75518 1.21201 0.87225 0.85959 0.74450 1.90647 1.14523 1.86490 1.48157 1.20276 0.98247 0.89826 1.02439 1.19070 1.02298 1.03174 0.93715 1.20287 0.97187 0.97184 0.95342 1.20288 1.04376 1.05180 0.96144 1.20665 0.99190 0.99246 0.93500 1.21282 0.99057 1.01320 0.96220 1.17332 0.88742 0.89802 0.91423 1.19480 1.35834 1.01571 0.91445 0.90668 1.25868 0.92556 0.94317 1.01231 1.69828 1.35759 1.05602 1.31029 0.86421 0.78951 0.80775 0.81273 1.19585 1.20244 1.18404 1.22204 1.00150 0.83784 0.97450 0.92390 0.91964 0.92387 0.91020 0.91125 0.77550 0.91290 0.90940 0.90107 0.91067 0.89232 0.92106 0.88609 0.90862 0.89882 0.89751 0.89656 0.86595 0.91058 0.91794 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.22 37.16 0.34 -1.17 16 2 C -0.15 -1.37 5.23 -26.73 -0.14 -1.51 16 3 C 0.12 1.39 0.76 -90.50 -0.07 1.32 16 4 O -0.55 -8.00 12.17 -35.23 -0.43 -8.43 16 5 C -0.10 -1.06 4.92 -26.69 -0.13 -1.19 16 6 C -0.13 -1.53 5.94 -26.61 -0.16 -1.68 16 7 C 0.11 1.34 6.34 -3.71 -0.02 1.32 16 8 N -0.62 -9.69 2.92 -172.76 -0.50 -10.19 16 9 C 0.52 10.55 7.33 -10.99 -0.08 10.47 16 10 O -0.52 -12.71 15.44 5.56 0.09 -12.62 16 11 C -0.07 -1.39 3.53 -29.04 -0.10 -1.49 16 12 C -0.18 -4.45 4.43 -103.91 -0.46 -4.91 16 13 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 14 C -0.24 -5.72 10.05 -39.29 -0.39 -6.12 16 15 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 16 C -0.16 -4.34 8.68 -38.88 -0.34 -4.68 16 17 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 18 C -0.45 -12.18 8.14 -37.74 -0.31 -12.49 16 19 H 0.08 2.00 6.68 -52.49 -0.35 1.65 16 20 C 0.08 1.99 5.16 -17.34 -0.09 1.90 16 21 N -0.80 -20.92 10.97 55.55 0.61 -20.32 16 22 Si 0.90 19.44 29.59 -169.99 -5.03 14.41 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 26 C 0.09 1.19 4.67 -3.70 -0.02 1.17 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.62 6.48 -51.93 -0.34 0.29 16 29 H 0.06 0.56 6.89 -51.93 -0.36 0.21 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.38 5.09 7.53 45.56 0.34 5.43 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.15 7.61 -51.93 -0.40 0.75 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.10 5.93 -51.93 -0.31 0.79 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 1.95 6.61 -51.93 -0.34 1.60 16 40 H 0.07 1.26 7.85 -51.93 -0.41 0.85 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.24 6.22 -52.48 -0.33 2.91 16 45 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.10 1.48 5.57 -51.93 -0.29 1.19 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -31.73 367.03 -9.64 -41.36 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.56 Total: 11.77 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -3.34 Total: -21.52 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.11 Total: -30.51 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.34 Total: -21.05 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.73 -9.64 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870680034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.318 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds