Wall clock time and date at job start Tue Mar 31 2020 12:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47044 * 2 1 4 4 O 1.42903 * 109.49857 * 65.00072 * 3 2 1 5 5 C 1.53042 * 109.49314 * 185.06334 * 3 2 1 6 6 C 1.53044 * 109.53215 * 181.31388 * 5 3 2 7 7 C 1.53189 * 109.31787 * 298.63452 * 6 5 3 8 8 N 1.46926 * 108.77472 * 54.63571 * 7 6 5 9 9 C 1.34778 * 120.63488 * 126.38939 * 8 7 6 10 10 O 1.21275 * 120.00573 * 180.02562 * 9 8 7 11 11 C 1.50700 * 119.99564 * 0.02562 * 9 8 7 12 12 C 1.50697 * 109.47027 * 179.97438 * 11 9 8 13 13 C 1.37639 * 120.12501 * 264.72080 * 12 11 9 14 14 C 1.38617 * 120.24420 * 179.74162 * 13 12 11 15 15 C 1.38659 * 120.50194 * 0.51811 * 14 13 12 16 16 C 1.37596 * 120.24717 * 359.76708 * 15 14 13 17 17 C 1.40696 * 120.12982 * 85.00145 * 12 11 9 18 18 C 1.41402 * 120.24425 * 0.02562 * 17 12 11 19 19 H 1.07994 * 119.99775 * 334.05656 * 18 17 12 20 20 C 1.39938 * 119.99951 * 154.05147 * 18 17 12 21 21 N 1.30824 * 120.00205 * 343.66434 * 20 18 17 22 22 Si 1.86797 * 120.00114 * 163.66295 * 20 18 17 23 23 H 1.48499 * 109.47404 * 89.99919 * 22 20 18 24 24 H 1.48505 * 109.47392 * 210.00038 * 22 20 18 25 25 H 1.48500 * 109.47077 * 330.00359 * 22 20 18 26 26 C 1.46941 * 118.76707 * 306.41680 * 8 7 6 27 27 H 1.09000 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47136 * 59.99817 * 1 2 3 29 29 H 1.09006 * 109.47243 * 300.00299 * 1 2 3 30 30 H 1.08999 * 109.46698 * 119.99909 * 2 1 3 31 31 H 1.08999 * 109.46890 * 239.99819 * 2 1 3 32 32 H 0.96702 * 113.99380 * 299.99830 * 4 3 2 33 33 H 1.08993 * 109.46101 * 301.33240 * 5 3 2 34 34 H 1.08996 * 109.46034 * 61.31119 * 5 3 2 35 35 H 1.09001 * 109.49725 * 58.59386 * 6 5 3 36 36 H 1.09002 * 109.49764 * 178.64949 * 6 5 3 37 37 H 1.08996 * 109.58932 * 174.42437 * 7 6 5 38 38 H 1.08999 * 109.58880 * 294.71304 * 7 6 5 39 39 H 1.09002 * 109.47237 * 299.99736 * 11 9 8 40 40 H 1.09000 * 109.47234 * 59.99703 * 11 9 8 41 41 H 1.07990 * 119.87778 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.74530 * 180.25979 * 14 13 12 43 43 H 1.07998 * 119.87429 * 179.74379 * 15 14 13 44 44 H 1.08005 * 120.12528 * 180.02562 * 16 15 14 45 45 H 0.97008 * 120.00417 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.55552 * 293.78374 * 26 8 7 47 47 H 1.09000 * 109.61903 * 173.35700 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6622 2.0820 1.2209 5 6 3.5651 1.4450 -0.1273 6 6 4.0790 2.8863 -0.0945 7 6 3.4936 3.6601 -1.2799 8 7 2.0296 3.5406 -1.2460 9 6 1.2500 4.6398 -1.2709 10 8 0.0428 4.5279 -1.2420 11 6 1.8786 6.0079 -1.3346 12 6 0.7971 7.0573 -1.3521 13 6 0.3539 7.5725 -2.5490 14 6 -0.6445 8.5340 -2.5682 15 6 -1.2003 8.9953 -1.3846 16 6 -0.7684 8.4985 -0.1763 17 6 0.2408 7.5183 -0.1449 18 6 0.6928 7.0009 1.0910 19 1 1.1228 6.0113 1.1373 20 6 0.5832 7.7712 2.2542 21 7 0.3703 9.0592 2.1681 22 14 0.7406 6.9605 3.9297 23 1 2.1637 6.9726 4.3537 24 1 -0.0771 7.7068 4.9195 25 1 0.2605 5.5577 3.8479 26 6 1.4307 2.2002 -1.1839 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 0.7070 2.1173 1.3671 33 1 3.9996 0.8856 0.7011 34 1 3.8515 0.9790 -1.0701 35 1 3.7717 3.3609 0.8374 36 1 5.1669 2.8862 -0.1611 37 1 3.7763 4.7102 -1.2062 38 1 3.8747 3.2436 -2.2123 39 1 2.5152 6.1563 -0.4624 40 1 2.4789 6.0902 -2.2407 41 1 0.7823 7.2232 -3.4767 42 1 -0.9892 8.9297 -3.5121 43 1 -1.9747 9.7476 -1.4112 44 1 -1.2030 8.8590 0.7444 45 1 0.2946 9.5933 2.9744 46 1 1.6413 1.6633 -2.1087 47 1 0.3529 2.2869 -1.0466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870680034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:10 Heat of formation + Delta-G solvation = -99.044034 kcal Electronic energy + Delta-G solvation = -27955.057858 eV Core-core repulsion = 24293.843266 eV Total energy + Delta-G solvation = -3661.214592 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.44481 -39.87242 -38.82939 -36.63198 -35.50151 -34.02710 -33.39907 -33.18428 -31.35129 -30.24614 -28.61062 -27.06739 -25.95753 -25.20318 -22.82292 -22.48921 -21.93187 -20.97870 -19.91998 -19.02909 -18.09284 -17.79862 -17.25711 -16.70423 -16.45800 -16.16598 -15.92705 -15.48523 -15.38825 -15.24914 -14.70822 -14.62080 -14.38839 -14.29188 -13.92006 -13.56060 -13.50451 -13.37099 -13.29709 -12.95294 -12.86051 -12.74767 -12.69977 -12.50115 -12.40338 -12.14264 -11.97174 -11.89507 -11.87914 -11.32566 -11.27683 -11.17776 -11.02703 -10.98076 -10.59108 -9.43308 -9.22359 -9.15149 -8.60208 -6.28772 0.99150 1.13193 1.33352 1.44809 1.51937 1.82656 2.18591 2.19609 2.77761 3.31279 3.57725 3.72730 3.81797 3.87365 4.07904 4.13381 4.20660 4.27219 4.35110 4.40108 4.48541 4.53716 4.59266 4.64796 4.70784 4.71189 4.76806 4.84205 4.89846 4.92237 5.03338 5.05199 5.08260 5.19101 5.21215 5.22561 5.34334 5.36967 5.48683 5.54897 5.70437 5.77786 6.04089 6.17168 6.21610 6.42690 6.51144 6.71917 6.74555 6.99992 7.11396 7.40762 8.36267 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.005058 C = 0.004211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.239814 B = 5534.829347 C = 6647.001056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.115 3.885 4 O -0.571 6.571 5 C -0.101 4.101 6 C -0.131 4.131 7 C 0.100 3.900 8 N -0.610 5.610 9 C 0.519 3.481 10 O -0.578 6.578 11 C -0.065 4.065 12 C -0.188 4.188 13 C -0.092 4.092 14 C -0.241 4.241 15 C -0.117 4.117 16 C -0.193 4.193 17 C 0.097 3.903 18 C -0.478 4.478 19 H 0.066 0.934 20 C 0.039 3.961 21 N -0.825 5.825 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.266 1.266 25 H -0.269 1.269 26 C 0.084 3.916 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.375 0.625 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.286 0.714 46 H 0.092 0.908 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.029 -16.610 -4.630 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.175 4.175 3 C 0.074 3.926 4 O -0.378 6.378 5 C -0.138 4.138 6 C -0.169 4.169 7 C -0.022 4.022 8 N -0.343 5.343 9 C 0.309 3.691 10 O -0.457 6.457 11 C -0.104 4.104 12 C -0.189 4.189 13 C -0.110 4.110 14 C -0.260 4.260 15 C -0.136 4.136 16 C -0.212 4.212 17 C 0.095 3.905 18 C -0.508 4.508 19 H 0.084 0.916 20 C -0.176 4.176 21 N -0.452 5.452 22 Si 0.789 3.211 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.039 4.039 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.223 0.777 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.124 0.876 44 H 0.114 0.886 45 H 0.096 0.904 46 H 0.110 0.890 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.031 -16.382 -4.420 19.221 hybrid contribution -1.096 0.174 0.996 1.491 sum 7.935 -16.208 -3.424 18.368 Atomic orbital electron populations 1.21880 0.95911 1.02714 1.01478 1.22102 0.96193 0.95071 1.04135 1.21811 0.96421 0.91337 0.83078 1.86529 1.28637 1.81833 1.40831 1.21565 0.91224 0.97162 1.03897 1.21835 1.01508 0.95746 0.97827 1.22022 0.77805 1.02516 0.99857 1.48094 1.07664 1.05193 1.73389 1.21073 0.86733 0.86941 0.74355 1.90622 1.16651 1.87283 1.51125 1.20248 0.97172 0.89179 1.03804 1.19557 1.02629 1.03436 0.93311 1.20720 0.97104 0.96862 0.96307 1.20712 1.03799 1.04613 0.96920 1.20947 0.99705 0.99621 0.93284 1.21287 1.00400 1.03045 0.96506 1.17711 0.89421 0.90594 0.92815 1.19543 1.37311 1.01428 0.92515 0.91627 1.26594 0.91956 0.94668 1.04354 1.69877 1.36377 1.06647 1.32281 0.85434 0.79558 0.79106 0.77047 1.18251 1.19009 1.19364 1.22398 0.98825 0.82993 0.99664 0.90833 0.92942 0.93594 0.90553 0.88787 0.77712 0.90636 0.87874 0.93748 0.88035 0.89539 0.88476 0.89241 0.87394 0.86633 0.86604 0.87613 0.88568 0.90373 0.89023 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.22 71.98 0.66 -2.24 16 2 C -0.14 -2.23 5.23 30.60 0.16 -2.07 16 3 C 0.11 2.51 0.76 -10.71 -0.01 2.50 16 4 O -0.57 -16.88 12.17 -148.98 -1.81 -18.69 16 5 C -0.10 -1.76 4.92 30.62 0.15 -1.61 16 6 C -0.13 -2.66 5.94 30.67 0.18 -2.47 16 7 C 0.10 2.19 6.34 86.36 0.55 2.73 16 8 N -0.61 -18.45 2.92 -818.89 -2.39 -20.84 16 9 C 0.52 21.13 7.33 87.66 0.64 21.77 16 10 O -0.58 -29.00 15.44 -3.02 -0.05 -29.05 16 11 C -0.06 -2.61 3.53 29.10 0.10 -2.51 16 12 C -0.19 -9.35 4.43 -19.41 -0.09 -9.44 16 13 C -0.09 -4.25 9.66 22.22 0.21 -4.04 16 14 C -0.24 -11.23 10.05 22.46 0.23 -11.01 16 15 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 16 C -0.19 -10.95 8.68 22.73 0.20 -10.75 16 17 C 0.10 5.48 5.56 -21.29 -0.12 5.36 16 18 C -0.48 -26.87 8.14 23.46 0.19 -26.68 16 19 H 0.07 3.68 6.68 -2.91 -0.02 3.67 16 20 C 0.04 2.05 5.16 85.25 0.44 2.49 16 21 N -0.83 -44.96 10.97 21.82 0.24 -44.72 16 22 Si 0.97 41.12 29.59 68.60 2.03 43.15 16 23 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.08 2.17 4.67 86.36 0.40 2.58 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.03 6.48 -2.39 -0.02 1.02 16 29 H 0.04 0.91 6.89 -2.38 -0.02 0.90 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.37 10.77 7.53 -74.06 -0.56 10.21 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.04 1.23 7.61 -2.39 -0.02 1.21 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.95 5.93 -2.39 -0.01 1.94 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 3.71 6.61 -2.39 -0.02 3.70 16 40 H 0.11 3.50 7.85 -2.39 -0.02 3.48 16 41 H 0.12 4.51 8.06 -2.92 -0.02 4.49 16 42 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 44 H 0.10 5.70 6.22 -2.91 -0.02 5.69 16 45 H 0.29 14.13 8.30 -92.70 -0.77 13.36 16 46 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.07 2.20 5.57 -2.39 -0.01 2.19 16 Total: -1.00 -72.80 367.03 2.57 -70.23 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: 0.42 Total: 40.99 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 4.13 Total: -41.07 kcal Atomic # 7 Polarization: -63.41 SS G_CDS: -2.15 Total: -65.55 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -1.86 Total: -47.74 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -72.80 2.57 -70.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870680034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.818 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds