Wall clock time and date at job start Tue Mar 31 2020 13:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47714 * 2 1 4 4 C 1.53000 * 109.47391 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46905 * 175.05527 * 4 3 2 6 6 N 1.46497 * 115.55061 * 302.91648 * 5 4 3 7 7 C 1.34778 * 120.00275 * 304.20465 * 6 5 4 8 8 O 1.21279 * 119.99889 * 354.88485 * 7 6 5 9 9 C 1.50697 * 120.00240 * 174.60821 * 7 6 5 10 10 C 1.50700 * 109.47546 * 180.02562 * 9 7 6 11 11 C 1.38324 * 119.96262 * 269.72659 * 10 9 7 12 12 C 1.38291 * 120.13259 * 179.76165 * 11 10 9 13 13 C 1.38116 * 120.06699 * 0.51164 * 12 11 10 14 14 C 1.38857 * 119.93467 * 359.74339 * 13 12 11 15 15 O 1.35749 * 120.06750 * 179.97438 * 14 13 12 16 16 C 1.34829 * 117.00180 * 5.93241 * 15 14 13 17 17 H 1.07999 * 119.99915 * 5.49094 * 16 15 14 18 18 C 1.38658 * 119.99844 * 185.49159 * 16 15 14 19 19 N 1.31553 * 119.99873 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47301 * 59.99874 * 20 18 16 22 22 H 1.48504 * 109.46958 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46873 * 300.00085 * 20 18 16 24 24 C 1.38081 * 119.96521 * 89.99638 * 10 9 7 25 25 C 1.52995 * 117.49902 * 88.59185 * 5 4 3 26 26 C 1.52995 * 117.49745 * 157.25196 * 5 4 3 27 27 H 1.08996 * 109.47708 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47232 * 300.00234 * 1 2 3 29 29 H 1.09006 * 109.47261 * 59.99616 * 1 2 3 30 30 H 1.09004 * 109.47232 * 239.99766 * 2 1 3 31 31 H 1.08999 * 109.47420 * 120.00749 * 2 1 3 32 32 H 1.09000 * 109.46669 * 60.00004 * 3 2 1 33 33 H 1.08999 * 109.46836 * 300.00204 * 3 2 1 34 34 H 1.09007 * 109.46761 * 55.05554 * 4 3 2 35 35 H 1.08996 * 109.46904 * 295.05532 * 4 3 2 36 36 H 0.97004 * 120.00515 * 124.20390 * 6 5 4 37 37 H 1.09000 * 109.47375 * 300.00305 * 9 7 6 38 38 H 1.09001 * 109.47469 * 60.00097 * 9 7 6 39 39 H 1.07994 * 119.93273 * 359.97438 * 11 10 9 40 40 H 1.07997 * 119.96007 * 180.25234 * 12 11 10 41 41 H 1.08007 * 120.03093 * 179.76720 * 13 12 11 42 42 H 0.97007 * 119.99831 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.03274 * 359.96264 * 24 10 9 44 44 H 1.09004 * 117.49764 * 214.99847 * 25 5 4 45 45 H 1.08997 * 117.49770 * 0.02562 * 25 5 4 46 46 H 1.09002 * 117.49843 * 359.97355 * 26 5 4 47 47 H 1.09002 * 117.50557 * 144.97066 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0802 2.8794 -0.1237 6 7 3.6141 3.6156 -1.3014 7 6 3.8217 3.1144 -2.5352 8 8 4.4745 2.1021 -2.6765 9 6 3.2375 3.8084 -3.7385 10 6 3.6128 3.0516 -4.9864 11 6 4.7765 3.3694 -5.6634 12 6 5.1269 2.6738 -6.8061 13 6 4.3099 1.6664 -7.2809 14 6 3.1385 1.3487 -6.6065 15 8 2.3333 0.3594 -7.0710 16 6 2.7867 -0.3576 -8.1190 17 1 3.7862 -0.1934 -8.4936 18 6 1.9697 -1.3057 -8.7157 19 7 0.7520 -1.5053 -8.2597 20 14 2.5981 -2.2996 -10.1672 21 1 3.8002 -3.0690 -9.7570 22 1 1.5399 -3.2379 -10.6199 23 1 2.9537 -1.3815 -11.2789 24 6 2.7920 2.0454 -5.4560 25 6 4.2837 3.6712 1.1695 26 6 5.4954 3.1726 0.3782 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.8535 -0.8416 35 1 3.9330 1.0073 0.9318 36 1 3.1561 4.4639 -1.1933 37 1 2.1518 3.8420 -3.6471 38 1 3.6286 4.8241 -3.7977 39 1 5.4144 4.1599 -5.2968 40 1 6.0381 2.9215 -7.3302 41 1 4.5823 1.1261 -8.1756 42 1 0.1805 -2.1689 -8.6770 43 1 1.8816 1.8004 -4.9291 44 1 4.0708 4.7399 1.1441 45 1 4.0546 3.1681 2.1089 46 1 6.0629 2.3417 0.7974 47 1 6.0799 3.9129 -0.1679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889530499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:29 Heat of formation + Delta-G solvation = -34.347816 kcal Electronic energy + Delta-G solvation = -26256.916022 eV Core-core repulsion = 22598.506869 eV Total energy + Delta-G solvation = -3658.409153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.13863 -38.92541 -37.67398 -36.29474 -35.07671 -32.98315 -32.27457 -31.70967 -29.95664 -29.12451 -27.04593 -25.19470 -24.38493 -22.82939 -21.98295 -21.47515 -21.03985 -20.33318 -19.46327 -17.62344 -17.07783 -16.74881 -16.29634 -15.59995 -15.22568 -15.01254 -14.70962 -14.41509 -14.20463 -13.89772 -13.78565 -13.46483 -13.31449 -13.12473 -13.06160 -12.59200 -12.36139 -12.24226 -11.82042 -11.79926 -11.59647 -11.48825 -11.33358 -11.20592 -11.06889 -10.75927 -10.73862 -10.62120 -10.57950 -10.55135 -10.40554 -10.29578 -9.48285 -9.30356 -8.91421 -8.76964 -7.99216 -7.14864 -6.38305 -3.97034 2.15696 2.46208 2.81223 3.12190 3.17403 3.19768 3.21114 3.57060 4.02232 4.37500 4.58339 4.62800 4.74358 4.94239 4.98075 5.05759 5.08760 5.16559 5.21810 5.27706 5.35043 5.39646 5.53271 5.55382 5.66864 5.68016 5.72794 5.75642 5.81412 5.82808 5.87475 5.94903 6.00116 6.11404 6.17645 6.25146 6.28791 6.38254 6.40859 6.58493 6.72855 6.98780 7.14258 7.33506 7.43163 7.50380 7.54373 7.90163 8.06892 8.41732 9.07546 9.78998 10.80004 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003263 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.712215 B = 8578.328781 C =10095.692493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.094 4.094 5 C 0.115 3.885 6 N -0.709 5.709 7 C 0.517 3.483 8 O -0.508 6.508 9 C -0.094 4.094 10 C -0.031 4.031 11 C -0.197 4.197 12 C -0.075 4.075 13 C -0.231 4.231 14 C 0.155 3.845 15 O -0.180 6.180 16 C -0.390 4.390 17 H 0.090 0.910 18 C 0.039 3.961 19 N -0.865 5.865 20 Si 0.939 3.061 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.174 4.174 25 C -0.176 4.176 26 C -0.179 4.179 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.737 11.215 17.457 21.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.132 4.132 5 C 0.027 3.973 6 N -0.362 5.362 7 C 0.304 3.696 8 O -0.381 6.381 9 C -0.134 4.134 10 C -0.032 4.032 11 C -0.216 4.216 12 C -0.093 4.093 13 C -0.250 4.250 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.466 4.466 17 H 0.107 0.893 18 C -0.165 4.165 19 N -0.500 5.500 20 Si 0.764 3.236 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.196 1.196 24 C -0.193 4.193 25 C -0.213 4.213 26 C -0.218 4.218 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.764 10.203 17.333 20.462 hybrid contribution 0.203 0.030 -0.694 0.724 sum 3.967 10.233 16.639 19.933 Atomic orbital electron populations 1.21759 0.95907 1.01626 1.01596 1.21533 0.95881 0.96862 1.02128 1.21478 0.94720 0.96850 1.01765 1.21380 0.95830 0.92907 1.03110 1.20571 0.97808 0.93258 0.85650 1.45434 1.61497 1.24821 1.04497 1.20727 0.80089 0.85275 0.83551 1.90737 1.37599 1.24273 1.85487 1.20597 1.02267 0.99537 0.90997 1.18640 0.94954 0.95834 0.93789 1.20341 0.98260 1.04038 0.98929 1.20674 0.97912 0.95093 0.95644 1.21174 0.97663 1.02627 1.03540 1.19283 0.90028 0.88269 0.92281 1.83985 1.40794 1.38545 1.45035 1.21255 0.99966 1.16685 1.08732 0.89257 1.25259 0.95154 0.97350 0.98727 1.70031 1.07057 1.32810 1.40117 0.85807 0.78425 0.79220 0.80129 1.19520 1.20321 1.19555 1.19922 1.02104 0.99715 0.97563 1.23324 1.02821 1.00196 0.95000 1.23373 0.91552 1.03638 1.03233 0.92799 0.93141 0.92552 0.91586 0.92376 0.92470 0.91932 0.89388 0.91305 0.76702 0.88307 0.88586 0.88030 0.87539 0.85667 0.92082 0.86907 0.88568 0.87959 0.88295 0.88653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.11 -1.20 5.15 -26.73 -0.14 -1.33 16 4 C -0.09 -1.08 4.85 -26.73 -0.13 -1.21 16 5 C 0.11 1.19 1.88 -131.83 -0.25 0.94 16 6 N -0.71 -7.44 4.92 -47.62 -0.23 -7.67 16 7 C 0.52 7.45 7.62 -10.99 -0.08 7.37 16 8 O -0.51 -9.76 14.50 5.56 0.08 -9.68 16 9 C -0.09 -1.26 5.83 -29.04 -0.17 -1.43 16 10 C -0.03 -0.58 4.37 -104.65 -0.46 -1.04 16 11 C -0.20 -3.62 9.70 -39.53 -0.38 -4.00 16 12 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 13 C -0.23 -5.30 9.13 -39.40 -0.36 -5.66 16 14 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 15 O -0.18 -5.32 9.76 0.06 0.00 -5.32 16 16 C -0.39 -11.26 9.44 30.89 0.29 -10.96 16 17 H 0.09 2.40 5.30 -52.49 -0.28 2.12 16 18 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 20 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 C -0.17 -3.86 9.64 -39.40 -0.38 -4.24 16 25 C -0.18 -1.32 10.15 -26.70 -0.27 -1.59 16 26 C -0.18 -1.72 10.18 -26.70 -0.27 -1.99 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.76 7.70 -51.93 -0.40 0.36 16 34 H 0.09 1.32 6.68 -51.92 -0.35 0.98 16 35 H 0.07 0.68 8.11 -51.93 -0.42 0.25 16 36 H 0.40 2.91 8.82 -40.82 -0.36 2.55 16 37 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 38 H 0.10 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 2.86 5.72 -52.48 -0.30 2.56 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 44 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -34.20 392.08 -9.23 -43.42 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.58 Total: 7.61 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -3.14 Total: -25.16 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.52 Total: -32.81 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.08 Total: -15.00 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.20 -9.23 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889530499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.077 kcal (2) G-P(sol) polarization free energy of solvation -34.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds