Wall clock time and date at job start Tue Mar 31 2020 13:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47714 * 2 1 4 4 C 1.53000 * 109.47391 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46905 * 175.05527 * 4 3 2 6 6 N 1.46497 * 115.55061 * 302.91648 * 5 4 3 7 7 C 1.34778 * 120.00275 * 304.20465 * 6 5 4 8 8 O 1.21279 * 119.99889 * 354.88485 * 7 6 5 9 9 C 1.50697 * 120.00240 * 174.60821 * 7 6 5 10 10 C 1.50700 * 109.47546 * 180.02562 * 9 7 6 11 11 C 1.38324 * 119.96262 * 269.72659 * 10 9 7 12 12 C 1.38291 * 120.13259 * 179.76165 * 11 10 9 13 13 C 1.38116 * 120.06699 * 0.51164 * 12 11 10 14 14 C 1.38857 * 119.93467 * 359.74339 * 13 12 11 15 15 O 1.35749 * 120.06750 * 179.97438 * 14 13 12 16 16 C 1.34829 * 117.00180 * 5.93241 * 15 14 13 17 17 H 1.07999 * 119.99915 * 5.49094 * 16 15 14 18 18 C 1.38658 * 119.99844 * 185.49159 * 16 15 14 19 19 N 1.31553 * 119.99873 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99853 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47301 * 59.99874 * 20 18 16 22 22 H 1.48504 * 109.46958 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46873 * 300.00085 * 20 18 16 24 24 C 1.38081 * 119.96521 * 89.99638 * 10 9 7 25 25 C 1.52995 * 117.49902 * 88.59185 * 5 4 3 26 26 C 1.52995 * 117.49745 * 157.25196 * 5 4 3 27 27 H 1.08996 * 109.47708 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47232 * 300.00234 * 1 2 3 29 29 H 1.09006 * 109.47261 * 59.99616 * 1 2 3 30 30 H 1.09004 * 109.47232 * 239.99766 * 2 1 3 31 31 H 1.08999 * 109.47420 * 120.00749 * 2 1 3 32 32 H 1.09000 * 109.46669 * 60.00004 * 3 2 1 33 33 H 1.08999 * 109.46836 * 300.00204 * 3 2 1 34 34 H 1.09007 * 109.46761 * 55.05554 * 4 3 2 35 35 H 1.08996 * 109.46904 * 295.05532 * 4 3 2 36 36 H 0.97004 * 120.00515 * 124.20390 * 6 5 4 37 37 H 1.09000 * 109.47375 * 300.00305 * 9 7 6 38 38 H 1.09001 * 109.47469 * 60.00097 * 9 7 6 39 39 H 1.07994 * 119.93273 * 359.97438 * 11 10 9 40 40 H 1.07997 * 119.96007 * 180.25234 * 12 11 10 41 41 H 1.08007 * 120.03093 * 179.76720 * 13 12 11 42 42 H 0.97007 * 119.99831 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.03274 * 359.96264 * 24 10 9 44 44 H 1.09004 * 117.49764 * 214.99847 * 25 5 4 45 45 H 1.08997 * 117.49770 * 0.02562 * 25 5 4 46 46 H 1.09002 * 117.49843 * 359.97355 * 26 5 4 47 47 H 1.09002 * 117.50557 * 144.97066 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0802 2.8794 -0.1237 6 7 3.6141 3.6156 -1.3014 7 6 3.8217 3.1144 -2.5352 8 8 4.4745 2.1021 -2.6765 9 6 3.2375 3.8084 -3.7385 10 6 3.6128 3.0516 -4.9864 11 6 4.7765 3.3694 -5.6634 12 6 5.1269 2.6738 -6.8061 13 6 4.3099 1.6664 -7.2809 14 6 3.1385 1.3487 -6.6065 15 8 2.3333 0.3594 -7.0710 16 6 2.7867 -0.3576 -8.1190 17 1 3.7862 -0.1934 -8.4936 18 6 1.9697 -1.3057 -8.7157 19 7 0.7520 -1.5053 -8.2597 20 14 2.5981 -2.2996 -10.1672 21 1 3.8002 -3.0690 -9.7570 22 1 1.5399 -3.2379 -10.6199 23 1 2.9537 -1.3815 -11.2789 24 6 2.7920 2.0454 -5.4560 25 6 4.2837 3.6712 1.1695 26 6 5.4954 3.1726 0.3782 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9562 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.8535 -0.8416 35 1 3.9330 1.0073 0.9318 36 1 3.1561 4.4639 -1.1933 37 1 2.1518 3.8420 -3.6471 38 1 3.6286 4.8241 -3.7977 39 1 5.4144 4.1599 -5.2968 40 1 6.0381 2.9215 -7.3302 41 1 4.5823 1.1261 -8.1756 42 1 0.1805 -2.1689 -8.6770 43 1 1.8816 1.8004 -4.9291 44 1 4.0708 4.7399 1.1441 45 1 4.0546 3.1681 2.1089 46 1 6.0629 2.3417 0.7974 47 1 6.0799 3.9129 -0.1679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889530499.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:28 Heat of formation + Delta-G solvation = -55.436871 kcal Electronic energy + Delta-G solvation = -26257.830512 eV Core-core repulsion = 22598.506869 eV Total energy + Delta-G solvation = -3659.323643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.26610 -40.57847 -38.85464 -37.93741 -35.96001 -34.36005 -34.03998 -33.10493 -30.91710 -30.78608 -28.48378 -27.24783 -25.25639 -23.65104 -23.32834 -23.03860 -21.96234 -21.73576 -20.42069 -19.50245 -18.78373 -17.97245 -17.20110 -16.84420 -16.61532 -16.35119 -16.11843 -15.91656 -15.53341 -15.51532 -14.99785 -14.79796 -14.69917 -14.33784 -14.03252 -13.99065 -13.89899 -13.59722 -13.17628 -12.95100 -12.80976 -12.49283 -12.44675 -12.40001 -12.35567 -12.24415 -12.19398 -12.13278 -11.94210 -11.54083 -11.42269 -11.25630 -11.23800 -10.80898 -10.57261 -9.81364 -9.63000 -8.97958 -8.47662 -6.16229 0.52132 0.75685 1.32726 1.44219 1.49472 1.72066 2.15675 2.19596 2.84048 2.85976 3.18133 3.43777 3.58112 3.81456 3.91204 3.97954 4.06259 4.10077 4.12072 4.24771 4.30078 4.32513 4.44367 4.51171 4.58395 4.64039 4.70885 4.73338 4.76872 4.81014 4.86312 4.92741 5.01155 5.05446 5.08810 5.12092 5.18933 5.23581 5.26438 5.30607 5.38707 5.45852 5.64625 5.70007 5.72898 5.75311 6.01932 6.23546 6.66599 6.96687 7.41024 7.78492 8.75762 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.003263 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.712215 B = 8578.328781 C =10095.692493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.103 4.103 4 C -0.092 4.092 5 C 0.086 3.914 6 N -0.688 5.688 7 C 0.517 3.483 8 O -0.567 6.567 9 C -0.092 4.092 10 C -0.023 4.023 11 C -0.181 4.181 12 C -0.074 4.074 13 C -0.247 4.247 14 C 0.112 3.888 15 O -0.234 6.234 16 C -0.415 4.415 17 H 0.098 0.902 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.260 1.260 22 H -0.269 1.269 23 H -0.255 1.255 24 C -0.192 4.192 25 C -0.137 4.137 26 C -0.191 4.191 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.418 0.582 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.273 0.727 43 H 0.103 0.897 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.096 0.904 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 14.334 19.430 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.141 4.141 4 C -0.130 4.130 5 C -0.001 4.001 6 N -0.341 5.341 7 C 0.304 3.696 8 O -0.444 6.444 9 C -0.132 4.132 10 C -0.024 4.024 11 C -0.199 4.199 12 C -0.092 4.092 13 C -0.267 4.267 14 C 0.062 3.938 15 O -0.141 6.141 16 C -0.492 4.492 17 H 0.115 0.885 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.184 1.184 22 H -0.193 1.193 23 H -0.179 1.179 24 C -0.212 4.212 25 C -0.175 4.175 26 C -0.230 4.230 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.256 0.744 37 H 0.136 0.864 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.114 0.886 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.342 13.413 19.361 24.151 hybrid contribution -0.155 -0.701 -1.063 1.283 sum 5.187 12.712 18.297 22.876 Atomic orbital electron populations 1.21751 0.95199 1.01795 1.01980 1.21547 0.96536 0.97353 1.01180 1.21422 0.94288 0.96281 1.02066 1.21296 0.96167 0.93605 1.01925 1.20663 0.99053 0.93265 0.87129 1.45189 1.60272 1.25158 1.03464 1.20847 0.79386 0.84476 0.84866 1.90739 1.40543 1.26751 1.86408 1.20709 1.03802 1.00688 0.87968 1.19179 0.93922 0.94159 0.95131 1.20964 0.97825 1.03676 0.97444 1.21132 0.98415 0.93539 0.96091 1.21293 0.97696 1.04052 1.03621 1.19878 0.91136 0.88855 0.93903 1.83938 1.42873 1.40864 1.46467 1.21761 1.00797 1.17552 1.09041 0.88458 1.26600 0.95241 0.98269 1.01896 1.70183 1.08867 1.34423 1.42480 0.84659 0.78124 0.77519 0.75952 1.18430 1.19346 1.17918 1.20187 1.02930 1.00995 0.97052 1.23444 0.99240 1.01109 0.93678 1.23413 0.91600 1.03863 1.04095 0.92843 0.90909 0.93902 0.95025 0.90853 0.89757 0.93709 0.94004 0.89677 0.74424 0.86380 0.83954 0.83555 0.83737 0.86518 0.91825 0.87857 0.86293 0.86292 0.88585 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.91 71.98 0.71 -2.42 16 2 C -0.13 -2.95 5.93 30.59 0.18 -2.77 16 3 C -0.10 -2.15 5.15 30.59 0.16 -1.99 16 4 C -0.09 -2.06 4.85 30.59 0.15 -1.92 16 5 C 0.09 1.60 1.88 3.60 0.01 1.60 16 6 N -0.69 -12.61 4.92 -422.95 -2.08 -14.70 16 7 C 0.52 14.08 7.62 87.66 0.67 14.75 16 8 O -0.57 -22.02 14.50 -3.03 -0.04 -22.07 16 9 C -0.09 -2.20 5.83 29.10 0.17 -2.03 16 10 C -0.02 -0.84 4.37 -19.88 -0.09 -0.92 16 11 C -0.18 -6.10 9.70 22.30 0.22 -5.88 16 12 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 13 C -0.25 -11.71 9.13 22.39 0.20 -11.51 16 14 C 0.11 6.05 6.65 22.58 0.15 6.20 16 15 O -0.23 -15.02 9.76 -22.72 -0.22 -15.24 16 16 C -0.42 -25.56 9.44 67.92 0.64 -24.92 16 17 H 0.10 5.54 5.30 -2.91 -0.02 5.53 16 18 C -0.02 -1.35 5.49 84.84 0.47 -0.89 16 19 N -0.92 -58.58 13.67 21.61 0.30 -58.28 16 20 Si 1.02 44.67 29.55 68.60 2.03 46.70 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 C -0.19 -8.92 9.64 22.39 0.22 -8.71 16 25 C -0.14 -1.47 10.15 30.62 0.31 -1.16 16 26 C -0.19 -3.21 10.18 30.62 0.31 -2.90 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.04 1.08 7.70 -2.39 -0.02 1.06 16 34 H 0.04 1.34 6.68 -2.38 -0.02 1.32 16 35 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 36 H 0.42 4.38 8.82 -92.70 -0.82 3.56 16 37 H 0.12 2.42 8.08 -2.39 -0.02 2.40 16 38 H 0.14 2.13 8.08 -2.39 -0.02 2.11 16 39 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 40 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 41 H 0.12 5.59 5.72 -2.91 -0.02 5.57 16 42 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 43 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 45 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -84.10 392.08 4.82 -79.29 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.14 Total: 32.33 kcal Atomic # 6 Polarization: -52.72 SS G_CDS: 4.70 Total: -48.02 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -1.79 Total: -72.98 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.27 Total: -37.31 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -84.10 4.82 -79.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889530499.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.848 kcal (2) G-P(sol) polarization free energy of solvation -84.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds