Wall clock time and date at job start Tue Mar 31 2020 13:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46983 * 2 1 4 4 C 1.52998 * 109.47274 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47022 * 185.16380 * 4 3 2 6 6 N 1.46496 * 115.55003 * 302.34223 * 5 4 3 7 7 C 1.34772 * 120.00274 * 294.42027 * 6 5 4 8 8 O 1.21281 * 119.99923 * 4.98396 * 7 6 5 9 9 C 1.50697 * 120.00122 * 184.97579 * 7 6 5 10 10 C 1.50699 * 109.47048 * 180.02562 * 9 7 6 11 11 C 1.38307 * 119.93321 * 90.00333 * 10 9 7 12 12 C 1.38106 * 120.06849 * 180.02562 * 11 10 9 13 13 C 1.38882 * 119.93044 * 359.97082 * 12 11 10 14 14 O 1.35751 * 120.06634 * 180.02562 * 13 12 11 15 15 C 1.34836 * 116.99969 * 354.43471 * 14 13 12 16 16 H 1.08000 * 119.99843 * 5.11064 * 15 14 13 17 17 C 1.38652 * 119.99640 * 185.10910 * 15 14 13 18 18 N 1.31554 * 119.99807 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00287 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.46933 * 89.99771 * 19 17 15 21 21 H 1.48500 * 109.47186 * 209.99786 * 19 17 15 22 22 H 1.48493 * 109.47221 * 330.00088 * 19 17 15 23 23 C 1.38878 * 119.86059 * 0.27804 * 13 12 11 24 24 C 1.38104 * 119.93301 * 359.49362 * 23 13 12 25 25 C 1.53007 * 117.49706 * 88.01744 * 5 4 3 26 26 C 1.53004 * 117.49835 * 156.67172 * 5 4 3 27 27 H 1.09005 * 109.46638 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47346 * 299.99433 * 1 2 3 29 29 H 1.08992 * 109.47192 * 60.00251 * 1 2 3 30 30 H 1.08990 * 109.47179 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.46668 * 119.99664 * 2 1 3 32 32 H 1.09005 * 109.46800 * 59.99711 * 3 2 1 33 33 H 1.09005 * 109.46900 * 300.00087 * 3 2 1 34 34 H 1.08999 * 109.47053 * 65.16415 * 4 3 2 35 35 H 1.09002 * 109.46520 * 305.16552 * 4 3 2 36 36 H 0.96999 * 119.99649 * 114.42635 * 6 5 4 37 37 H 1.08999 * 109.47310 * 60.00473 * 9 7 6 38 38 H 1.09007 * 109.47263 * 300.00042 * 9 7 6 39 39 H 1.07997 * 119.96333 * 359.97438 * 11 10 9 40 40 H 1.07997 * 120.03251 * 179.97438 * 12 11 10 41 41 H 0.97001 * 120.00271 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.03034 * 179.72667 * 23 13 12 43 43 H 1.07996 * 119.96353 * 180.23262 * 24 23 13 44 44 H 1.09000 * 117.49307 * 214.99976 * 25 5 4 45 45 H 1.08999 * 117.49753 * 0.02562 * 25 5 4 46 46 H 1.09010 * 117.49534 * 359.97438 * 26 5 4 47 47 H 1.09000 * 117.50140 * 144.96825 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0798 2.8793 0.1305 6 7 3.6242 3.8076 -0.9072 7 6 4.0114 3.6317 -2.1860 8 8 4.6619 2.6555 -2.4938 9 6 3.6359 4.6479 -3.2336 10 6 4.1859 4.2189 -4.5694 11 6 3.4264 3.4192 -5.4039 12 6 3.9279 3.0241 -6.6285 13 6 5.1962 3.4311 -7.0219 14 8 5.6917 3.0447 -8.2253 15 6 4.9519 2.1735 -8.9407 16 1 3.9742 1.8791 -8.5890 17 6 5.4465 1.6557 -10.1280 18 7 4.7246 0.8061 -10.8264 19 14 7.1379 2.1645 -10.7361 20 1 8.1597 1.2334 -10.1934 21 1 7.1649 2.1186 -12.2201 22 1 7.4338 3.5456 -10.2781 23 6 5.9584 4.2298 -6.1795 24 6 5.4494 4.6255 -4.9581 25 6 4.2704 3.4363 1.5427 26 6 5.4900 3.0807 0.6889 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 1.0108 -0.9318 35 1 3.9329 0.8508 0.8410 36 1 3.0438 4.5489 -0.6737 37 1 4.0519 5.6186 -2.9637 38 1 2.5501 4.7222 -3.2950 39 1 2.4404 3.1028 -5.0973 40 1 3.3345 2.3993 -7.2796 41 1 5.0704 0.4441 -11.6572 42 1 6.9467 4.5442 -6.4807 43 1 6.0402 5.2497 -4.3042 44 1 4.0567 4.4936 1.6997 45 1 4.0329 2.7791 2.3793 46 1 6.0544 2.1896 0.9641 47 1 6.0789 3.9036 0.2838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889530958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:33 Heat of formation + Delta-G solvation = -33.140001 kcal Electronic energy + Delta-G solvation = -25890.390955 eV Core-core repulsion = 22232.034177 eV Total energy + Delta-G solvation = -3658.356778 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.16624 -39.08665 -37.79672 -36.47195 -35.21805 -33.00341 -32.41968 -31.28664 -30.19063 -30.07496 -26.90406 -24.97151 -24.46182 -22.88901 -22.07935 -21.70514 -21.19665 -20.15125 -19.49802 -17.84300 -17.28037 -16.95521 -16.43153 -15.63196 -15.39998 -15.00329 -14.75857 -14.30552 -14.05363 -13.94267 -13.81842 -13.70525 -13.42726 -13.24579 -13.21222 -12.66360 -12.51185 -12.32976 -12.15171 -11.86233 -11.71344 -11.60815 -11.50713 -11.26033 -11.20428 -10.89982 -10.76057 -10.73508 -10.70927 -10.63414 -10.27724 -10.11779 -9.52705 -9.33827 -9.02615 -8.81658 -8.18422 -7.25603 -6.37486 -4.03761 2.19844 2.20915 2.79245 3.07579 3.25204 3.29409 3.43639 3.48722 4.27619 4.29265 4.49980 4.56890 4.68032 4.80813 4.89753 4.90974 4.94234 5.03345 5.15443 5.20365 5.26774 5.30331 5.31871 5.42964 5.53749 5.59012 5.63417 5.65094 5.68645 5.70684 5.79526 5.80821 5.83924 5.92261 5.99428 6.13494 6.18130 6.23952 6.38097 6.53222 6.61697 6.84559 7.07369 7.27249 7.35741 7.50083 7.67086 7.85185 8.08625 8.38342 8.98068 9.61088 10.70354 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002715 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.643242 B =10312.445633 C =11260.977035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.092 4.092 5 C 0.111 3.889 6 N -0.710 5.710 7 C 0.512 3.488 8 O -0.510 6.510 9 C -0.082 4.082 10 C -0.160 4.160 11 C -0.058 4.058 12 C -0.219 4.219 13 C 0.162 3.838 14 O -0.218 6.218 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.881 5.881 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.191 4.191 24 C -0.062 4.062 25 C -0.175 4.175 26 C -0.175 4.175 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.398 0.602 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.132 0.868 41 H 0.279 0.721 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.099 0.901 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 6.376 25.207 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.131 4.131 5 C 0.024 3.976 6 N -0.364 5.364 7 C 0.299 3.701 8 O -0.383 6.383 9 C -0.122 4.122 10 C -0.161 4.161 11 C -0.076 4.076 12 C -0.238 4.238 13 C 0.110 3.890 14 O -0.124 6.124 15 C -0.464 4.464 16 H 0.124 0.876 17 C -0.140 4.140 18 N -0.519 5.519 19 Si 0.731 3.269 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.210 4.210 24 C -0.080 4.080 25 C -0.213 4.213 26 C -0.213 4.213 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.150 0.850 41 H 0.089 0.911 42 H 0.134 0.866 43 H 0.127 0.873 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.769 5.577 24.612 25.682 hybrid contribution 0.278 0.411 -0.202 0.536 sum -4.491 5.988 24.410 25.531 Atomic orbital electron populations 1.21764 0.95953 1.01520 1.01670 1.21539 0.95802 0.96998 1.02049 1.21480 0.94887 0.96633 1.01812 1.21373 0.95628 0.92568 1.03514 1.20557 0.98407 0.91108 0.87557 1.45463 1.52989 1.31043 1.06882 1.20996 0.79347 0.87474 0.82305 1.90735 1.37639 1.29676 1.80260 1.20432 1.02158 0.97645 0.91926 1.18692 0.96478 1.05802 0.95149 1.20558 0.98260 0.95437 0.93350 1.21222 0.97213 1.06803 0.98575 1.19114 0.91832 0.92773 0.85277 1.83571 1.47054 1.56416 1.25314 1.20775 1.01313 1.20552 1.03738 0.87646 1.24460 0.99365 0.95018 0.95172 1.69647 1.37890 1.29003 1.15387 0.86182 0.82848 0.80403 0.77477 1.19887 1.20824 1.18366 1.20147 1.00501 1.05255 0.95131 1.20390 0.94196 0.98492 0.94911 1.23326 1.02770 1.01911 0.93284 1.23335 0.91320 1.03732 1.02906 0.92864 0.92978 0.92695 0.91831 0.92252 0.92353 0.92022 0.89773 0.91324 0.76739 0.88989 0.89000 0.87589 0.84997 0.91103 0.86593 0.87286 0.88533 0.87994 0.88234 0.88615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.11 5.93 -26.73 -0.16 -1.26 16 3 C -0.11 -0.99 5.04 -26.73 -0.13 -1.13 16 4 C -0.09 -0.94 5.01 -26.73 -0.13 -1.07 16 5 C 0.11 1.06 1.72 -131.82 -0.23 0.83 16 6 N -0.71 -6.77 5.11 -47.61 -0.24 -7.01 16 7 C 0.51 6.80 7.72 -10.99 -0.08 6.71 16 8 O -0.51 -9.27 14.80 5.56 0.08 -9.19 16 9 C -0.08 -0.98 5.83 -29.04 -0.17 -1.15 16 10 C -0.16 -2.71 4.38 -104.57 -0.46 -3.17 16 11 C -0.06 -1.09 9.69 -39.60 -0.38 -1.47 16 12 C -0.22 -4.93 9.17 -39.39 -0.36 -5.29 16 13 C 0.16 3.90 6.65 -39.11 -0.26 3.64 16 14 O -0.22 -5.95 8.59 0.03 0.00 -5.95 16 15 C -0.39 -11.23 9.95 30.89 0.31 -10.93 16 16 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 17 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 18 N -0.88 -25.96 13.96 55.48 0.77 -25.18 16 19 Si 0.91 22.18 28.62 -169.99 -4.86 17.31 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.19 -3.97 9.99 -39.39 -0.39 -4.36 16 24 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 25 C -0.18 -1.21 10.16 -26.69 -0.27 -1.48 16 26 C -0.17 -1.61 10.18 -26.69 -0.27 -1.88 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 34 H 0.08 1.14 6.98 -51.93 -0.36 0.78 16 35 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 36 H 0.40 2.57 8.83 -40.82 -0.36 2.21 16 37 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.09 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 40 H 0.13 3.10 5.64 -52.49 -0.30 2.81 16 41 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 47 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -33.03 391.99 -9.07 -42.09 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.61 Total: 4.65 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.11 Total: -22.63 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.53 Total: -32.20 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.03 -9.07 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889530958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.953 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds