Wall clock time and date at job start Tue Mar 31 2020 13:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46983 * 2 1 4 4 C 1.52998 * 109.47274 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47022 * 185.16380 * 4 3 2 6 6 N 1.46496 * 115.55003 * 302.34223 * 5 4 3 7 7 C 1.34772 * 120.00274 * 294.42027 * 6 5 4 8 8 O 1.21281 * 119.99923 * 4.98396 * 7 6 5 9 9 C 1.50697 * 120.00122 * 184.97579 * 7 6 5 10 10 C 1.50699 * 109.47048 * 180.02562 * 9 7 6 11 11 C 1.38307 * 119.93321 * 90.00333 * 10 9 7 12 12 C 1.38106 * 120.06849 * 180.02562 * 11 10 9 13 13 C 1.38882 * 119.93044 * 359.97082 * 12 11 10 14 14 O 1.35751 * 120.06634 * 180.02562 * 13 12 11 15 15 C 1.34836 * 116.99969 * 354.43471 * 14 13 12 16 16 H 1.08000 * 119.99843 * 5.11064 * 15 14 13 17 17 C 1.38652 * 119.99640 * 185.10910 * 15 14 13 18 18 N 1.31554 * 119.99807 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00287 * 0.02562 * 17 15 14 20 20 H 1.48507 * 109.46933 * 89.99771 * 19 17 15 21 21 H 1.48500 * 109.47186 * 209.99786 * 19 17 15 22 22 H 1.48493 * 109.47221 * 330.00088 * 19 17 15 23 23 C 1.38878 * 119.86059 * 0.27804 * 13 12 11 24 24 C 1.38104 * 119.93301 * 359.49362 * 23 13 12 25 25 C 1.53007 * 117.49706 * 88.01744 * 5 4 3 26 26 C 1.53004 * 117.49835 * 156.67172 * 5 4 3 27 27 H 1.09005 * 109.46638 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47346 * 299.99433 * 1 2 3 29 29 H 1.08992 * 109.47192 * 60.00251 * 1 2 3 30 30 H 1.08990 * 109.47179 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.46668 * 119.99664 * 2 1 3 32 32 H 1.09005 * 109.46800 * 59.99711 * 3 2 1 33 33 H 1.09005 * 109.46900 * 300.00087 * 3 2 1 34 34 H 1.08999 * 109.47053 * 65.16415 * 4 3 2 35 35 H 1.09002 * 109.46520 * 305.16552 * 4 3 2 36 36 H 0.96999 * 119.99649 * 114.42635 * 6 5 4 37 37 H 1.08999 * 109.47310 * 60.00473 * 9 7 6 38 38 H 1.09007 * 109.47263 * 300.00042 * 9 7 6 39 39 H 1.07997 * 119.96333 * 359.97438 * 11 10 9 40 40 H 1.07997 * 120.03251 * 179.97438 * 12 11 10 41 41 H 0.97001 * 120.00271 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.03034 * 179.72667 * 23 13 12 43 43 H 1.07996 * 119.96353 * 180.23262 * 24 23 13 44 44 H 1.09000 * 117.49307 * 214.99976 * 25 5 4 45 45 H 1.08999 * 117.49753 * 0.02562 * 25 5 4 46 46 H 1.09010 * 117.49534 * 359.97438 * 26 5 4 47 47 H 1.09000 * 117.50140 * 144.96825 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0798 2.8793 0.1305 6 7 3.6242 3.8076 -0.9072 7 6 4.0114 3.6317 -2.1860 8 8 4.6619 2.6555 -2.4938 9 6 3.6359 4.6479 -3.2336 10 6 4.1859 4.2189 -4.5694 11 6 3.4264 3.4192 -5.4039 12 6 3.9279 3.0241 -6.6285 13 6 5.1962 3.4311 -7.0219 14 8 5.6917 3.0447 -8.2253 15 6 4.9519 2.1735 -8.9407 16 1 3.9742 1.8791 -8.5890 17 6 5.4465 1.6557 -10.1280 18 7 4.7246 0.8061 -10.8264 19 14 7.1379 2.1645 -10.7361 20 1 8.1597 1.2334 -10.1934 21 1 7.1649 2.1186 -12.2201 22 1 7.4338 3.5456 -10.2781 23 6 5.9584 4.2298 -6.1795 24 6 5.4494 4.6255 -4.9581 25 6 4.2704 3.4363 1.5427 26 6 5.4900 3.0807 0.6889 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 1.0108 -0.9318 35 1 3.9329 0.8508 0.8410 36 1 3.0438 4.5489 -0.6737 37 1 4.0519 5.6186 -2.9637 38 1 2.5501 4.7222 -3.2950 39 1 2.4404 3.1028 -5.0973 40 1 3.3345 2.3993 -7.2796 41 1 5.0704 0.4441 -11.6572 42 1 6.9467 4.5442 -6.4807 43 1 6.0402 5.2497 -4.3042 44 1 4.0567 4.4936 1.6997 45 1 4.0329 2.7791 2.3793 46 1 6.0544 2.1896 0.9641 47 1 6.0789 3.9036 0.2838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889530958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:32 Heat of formation + Delta-G solvation = -52.915262 kcal Electronic energy + Delta-G solvation = -25891.248475 eV Core-core repulsion = 22232.034177 eV Total energy + Delta-G solvation = -3659.214298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24232 -40.66389 -38.92234 -37.98706 -35.92274 -34.53165 -33.95118 -32.65293 -31.80986 -30.79877 -28.44119 -26.81515 -25.20823 -23.72914 -23.58089 -22.89025 -21.91511 -21.47461 -20.36871 -19.82462 -19.11937 -17.94413 -17.27145 -16.78949 -16.49252 -16.22250 -16.12640 -15.72551 -15.61061 -15.36562 -15.16914 -14.80132 -14.67836 -14.35176 -14.22723 -14.09148 -13.98793 -13.89547 -13.12995 -13.02842 -12.80961 -12.51108 -12.46070 -12.41755 -12.32422 -12.30986 -12.22680 -11.94136 -11.89159 -11.48961 -11.46447 -11.29065 -11.12968 -10.91773 -10.52190 -9.86040 -9.79313 -8.98183 -8.51523 -6.24109 0.57893 0.61526 1.29036 1.34025 1.50395 1.79378 2.20063 2.26989 2.77744 2.83855 3.04595 3.18166 3.59521 3.85419 3.94237 3.97182 4.03687 4.09270 4.14442 4.18695 4.26663 4.34032 4.47439 4.54585 4.58135 4.69387 4.72795 4.76884 4.81240 4.83115 4.89253 4.96090 4.98790 5.01788 5.12182 5.19475 5.23268 5.24806 5.29276 5.37028 5.41590 5.48607 5.56045 5.73214 5.73739 5.79084 5.90526 6.24380 6.71362 6.82756 7.46495 7.57556 8.60485 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015927 B = 0.002715 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.643242 B =10312.445633 C =11260.977035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.090 4.090 5 C 0.088 3.912 6 N -0.689 5.689 7 C 0.513 3.487 8 O -0.570 6.570 9 C -0.080 4.080 10 C -0.135 4.135 11 C -0.065 4.065 12 C -0.238 4.238 13 C 0.118 3.882 14 O -0.246 6.246 15 C -0.400 4.400 16 H 0.078 0.922 17 C 0.009 3.991 18 N -0.925 5.925 19 Si 0.972 3.028 20 H -0.268 1.268 21 H -0.264 1.264 22 H -0.262 1.262 23 C -0.194 4.194 24 C -0.059 4.059 25 C -0.138 4.138 26 C -0.193 4.193 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.080 0.920 36 H 0.417 0.583 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.285 0.715 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 9.162 29.265 31.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.140 4.140 4 C -0.128 4.128 5 C 0.001 3.999 6 N -0.342 5.342 7 C 0.300 3.700 8 O -0.447 6.447 9 C -0.119 4.119 10 C -0.136 4.136 11 C -0.083 4.083 12 C -0.258 4.258 13 C 0.069 3.931 14 O -0.154 6.154 15 C -0.477 4.477 16 H 0.096 0.904 17 C -0.189 4.189 18 N -0.566 5.566 19 Si 0.794 3.206 20 H -0.193 1.193 21 H -0.188 1.188 22 H -0.186 1.186 23 C -0.213 4.213 24 C -0.077 4.077 25 C -0.175 4.175 26 C -0.231 4.231 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.255 0.745 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.170 0.830 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.933 8.416 28.744 30.354 hybrid contribution 0.188 -0.363 -1.074 1.150 sum -4.745 8.052 27.670 29.206 Atomic orbital electron populations 1.21752 0.95109 1.01852 1.02012 1.21553 0.96553 0.97007 1.01469 1.21414 0.93907 0.96603 1.02046 1.21299 0.96448 0.93344 1.01755 1.20659 0.99063 0.90932 0.89281 1.45219 1.52077 1.31195 1.05757 1.21125 0.78592 0.86718 0.83539 1.90747 1.40625 1.32026 1.81339 1.20560 1.04254 0.98800 0.88331 1.19297 0.95500 1.02238 0.96558 1.20891 0.99731 0.95502 0.92156 1.21244 0.97072 1.07397 1.00047 1.19666 0.93177 0.94790 0.85456 1.83509 1.47349 1.57518 1.27007 1.20711 1.00863 1.21517 1.04574 0.90422 1.25300 1.03325 0.95080 0.95206 1.69731 1.39844 1.30686 1.16299 0.85200 0.77940 0.79688 0.77761 1.19279 1.18845 1.18609 1.20505 1.00834 1.04258 0.95676 1.20928 0.94769 0.98035 0.93967 1.23431 0.99139 1.03296 0.91652 1.23365 0.91666 1.03603 1.04454 0.92635 0.91489 0.93424 0.94135 0.91178 0.90123 0.93480 0.94081 0.90133 0.74459 0.84887 0.85781 0.85147 0.87696 0.90539 0.85442 0.83028 0.86421 0.86344 0.88728 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.43 16 2 C -0.13 -2.13 5.93 30.60 0.18 -1.95 16 3 C -0.10 -1.64 5.04 30.59 0.15 -1.49 16 4 C -0.09 -1.72 5.01 30.59 0.15 -1.57 16 5 C 0.09 1.43 1.72 3.61 0.01 1.44 16 6 N -0.69 -10.63 5.11 -422.93 -2.16 -12.79 16 7 C 0.51 12.09 7.72 87.66 0.68 12.76 16 8 O -0.57 -20.23 14.80 -3.03 -0.04 -20.28 16 9 C -0.08 -1.54 5.83 29.10 0.17 -1.37 16 10 C -0.13 -4.21 4.38 -19.83 -0.09 -4.29 16 11 C -0.06 -2.42 9.69 22.25 0.22 -2.20 16 12 C -0.24 -11.31 9.17 22.39 0.21 -11.11 16 13 C 0.12 5.91 6.65 22.58 0.15 6.06 16 14 O -0.25 -14.14 8.59 -22.82 -0.20 -14.34 16 15 C -0.40 -24.80 9.95 67.92 0.68 -24.13 16 16 H 0.08 5.06 5.44 -2.91 -0.02 5.04 16 17 C 0.01 0.54 5.49 84.83 0.47 1.01 16 18 N -0.92 -57.18 13.96 21.61 0.30 -56.88 16 19 Si 0.97 47.25 28.62 68.60 1.96 49.21 16 20 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 23 C -0.19 -7.97 9.99 22.39 0.22 -7.74 16 24 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16 25 C -0.14 -1.30 10.16 30.62 0.31 -0.99 16 26 C -0.19 -3.10 10.18 30.62 0.31 -2.79 16 27 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.05 0.89 8.02 -2.38 -0.02 0.87 16 34 H 0.04 1.15 6.98 -2.39 -0.02 1.13 16 35 H 0.08 1.30 8.11 -2.39 -0.02 1.28 16 36 H 0.42 3.27 8.83 -92.71 -0.82 2.45 16 37 H 0.13 1.61 8.08 -2.39 -0.02 1.59 16 38 H 0.12 1.72 8.08 -2.38 -0.02 1.70 16 39 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 40 H 0.11 5.46 5.64 -2.91 -0.02 5.44 16 41 H 0.28 16.10 8.31 -92.71 -0.77 15.33 16 42 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -79.42 391.99 4.75 -74.67 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.14 Total: 21.92 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.74 Total: -41.52 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: -1.86 Total: -69.68 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.24 Total: -34.61 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.96 Total: 49.21 kcal Total: -79.42 4.75 -74.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889530958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.755 kcal (2) G-P(sol) polarization free energy of solvation -79.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds