Wall clock time and date at job start Tue Mar 31 2020 12:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47096 * 2 1 4 4 C 1.38673 * 120.42119 * 90.00503 * 3 2 1 5 5 C 1.38624 * 118.42448 * 180.02562 * 4 3 2 6 6 C 1.38225 * 119.16349 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.62002 * 179.72812 * 6 5 4 8 8 C 1.50696 * 109.46958 * 124.99837 * 7 6 5 9 9 O 1.20826 * 120.00494 * 0.02562 * 8 7 6 10 10 O 1.34236 * 119.99399 * 179.97438 * 8 7 6 11 11 C 1.45206 * 116.99697 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47063 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.41223 * 304.85517 * 12 11 10 14 14 C 1.52954 * 109.41657 * 64.64457 * 12 11 10 15 15 C 1.53228 * 109.40971 * 183.70226 * 14 12 11 16 16 C 1.51269 * 108.53510 * 305.37742 * 15 14 12 17 17 C 1.37877 * 120.84580 * 231.36300 * 16 15 14 18 18 N 1.31517 * 119.99636 * 164.54901 * 17 16 15 19 19 Si 1.86792 * 120.00374 * 344.54906 * 17 16 15 20 20 H 1.48503 * 109.47202 * 354.63745 * 19 17 16 21 21 H 1.48505 * 109.47259 * 114.63409 * 19 17 16 22 22 H 1.48501 * 109.47651 * 234.63759 * 19 17 16 23 23 C 1.51269 * 118.30388 * 51.34255 * 16 15 14 24 24 C 1.52962 * 109.41273 * 184.99896 * 12 11 10 25 25 N 1.31856 * 120.76218 * 0.02562 * 6 5 4 26 26 C 1.31892 * 121.72550 * 359.97438 * 25 6 5 27 27 H 1.08997 * 109.47177 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47145 * 299.99726 * 1 2 3 29 29 H 1.09003 * 109.47672 * 59.99498 * 1 2 3 30 30 H 1.09002 * 109.46412 * 240.00248 * 2 1 3 31 31 H 1.08996 * 109.47326 * 120.00337 * 2 1 3 32 32 H 1.08000 * 120.78447 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.41984 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46647 * 244.99822 * 7 6 5 35 35 H 1.09000 * 109.47183 * 4.99447 * 7 6 5 36 36 H 1.09008 * 109.47012 * 300.00088 * 11 10 8 37 37 H 1.09003 * 109.47132 * 59.99645 * 11 10 8 38 38 H 1.09001 * 109.48625 * 303.68743 * 14 12 11 39 39 H 1.09003 * 109.48140 * 63.72252 * 14 12 11 40 40 H 1.08999 * 109.63133 * 185.65531 * 15 14 12 41 41 H 1.09003 * 109.62245 * 65.08401 * 15 14 12 42 42 H 0.97004 * 119.99629 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.62884 * 188.93688 * 23 16 15 44 44 H 1.09006 * 109.62504 * 68.36494 * 23 16 15 45 45 H 1.08997 * 109.48078 * 296.27226 * 24 12 11 46 46 H 1.09001 * 109.48212 * 56.31750 * 24 12 11 47 47 H 1.07993 * 119.61601 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2665 2.0827 1.1958 5 6 2.7277 3.3891 1.1475 6 6 2.9380 3.9841 -0.0822 7 6 3.4335 5.4059 -0.1468 8 6 4.6880 5.4634 -0.9797 9 8 5.1338 4.4535 -1.4711 10 8 5.3096 6.6367 -1.1767 11 6 6.5123 6.6171 -1.9901 12 6 7.0760 8.0351 -2.1011 13 1 6.3045 8.7026 -2.4847 14 6 7.5202 8.5153 -0.7185 15 6 7.9988 9.9679 -0.8135 16 6 9.0711 10.0523 -1.8771 17 6 10.2867 10.6457 -1.6098 18 7 11.3056 10.4502 -2.4181 19 14 10.4863 11.7271 -0.0999 20 1 9.1706 11.8915 0.5687 21 1 11.4437 11.0917 0.8409 22 1 11.0035 13.0577 -0.5088 23 6 8.7760 9.4688 -3.2411 24 6 8.2693 8.0343 -3.0580 25 7 2.7046 3.3241 -1.1996 26 6 2.2654 2.0805 -1.1916 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0928 1.5924 2.1423 33 1 2.9204 3.9351 2.0592 34 1 2.6682 6.0371 -0.5984 35 1 3.6496 5.7614 0.8607 36 1 7.2541 5.9669 -1.5262 37 1 6.2720 6.2422 -2.9850 38 1 6.6814 8.4535 -0.0252 39 1 8.3354 7.8868 -0.3600 40 1 8.4093 10.2817 0.1462 41 1 7.1623 10.6118 -1.0852 42 1 12.1607 10.8679 -2.2303 43 1 9.6860 9.4619 -3.8411 44 1 8.0114 10.0665 -3.7374 45 1 9.0667 7.4172 -2.6441 46 1 7.9613 7.6316 -4.0229 47 1 2.0860 1.5718 -2.1272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893026821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:27 Heat of formation + Delta-G solvation = -84.955751 kcal Electronic energy + Delta-G solvation = -25596.920491 eV Core-core repulsion = 21936.316813 eV Total energy + Delta-G solvation = -3660.603678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.85606 -39.92750 -37.34430 -35.93269 -35.22545 -32.73200 -32.52057 -31.76064 -29.81628 -29.23883 -28.16653 -25.18538 -24.16823 -23.79356 -21.92433 -21.43346 -21.05848 -20.49050 -19.10832 -17.57237 -16.95288 -16.77252 -16.35797 -15.94272 -15.71853 -15.54278 -14.52562 -14.38700 -14.28363 -13.88316 -13.69663 -13.49691 -13.29651 -12.96158 -12.91230 -12.79215 -12.52631 -12.39533 -12.21538 -11.85584 -11.72285 -11.61766 -11.40635 -11.14226 -10.84794 -10.78150 -10.61987 -10.24297 -10.18802 -10.02856 -9.87400 -9.75225 -9.59453 -9.40428 -9.08751 -8.81991 -8.62656 -8.29798 -6.09694 -3.93808 0.77075 1.04671 2.40925 2.84285 3.28125 3.38556 3.42032 3.57952 3.91168 4.33192 4.39327 4.42283 4.54103 4.63349 4.82896 4.91499 4.94428 5.04047 5.11880 5.15543 5.18549 5.32476 5.42186 5.45438 5.47990 5.50501 5.57142 5.75091 5.76126 5.80670 5.98179 6.06210 6.13592 6.39248 6.42290 6.59064 6.76186 6.77241 6.84270 6.99768 7.10362 7.18965 7.24521 7.49010 7.70498 7.77891 7.78771 7.87082 7.99839 8.44497 9.01228 9.58861 11.00341 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.035333 B = 0.002093 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.274978 B =13372.421541 C =13801.741047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.075 4.075 5 C -0.159 4.159 6 C 0.131 3.869 7 C -0.064 4.064 8 C 0.462 3.538 9 O -0.497 6.497 10 O -0.353 6.353 11 C 0.074 3.926 12 C -0.072 4.072 13 H 0.069 0.931 14 C -0.100 4.100 15 C -0.015 4.015 16 C -0.491 4.491 17 C 0.077 3.923 18 N -0.885 5.885 19 Si 0.879 3.121 20 H -0.261 1.261 21 H -0.284 1.284 22 H -0.286 1.286 23 C 0.011 3.989 24 C -0.100 4.100 25 N -0.455 5.455 26 C 0.107 3.893 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.056 0.944 44 H 0.003 0.997 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.829 -17.469 7.468 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.139 4.139 4 C -0.101 4.101 5 C -0.179 4.179 6 C -0.007 4.007 7 C -0.102 4.102 8 C 0.303 3.697 9 O -0.384 6.384 10 O -0.270 6.270 11 C 0.001 3.999 12 C -0.091 4.091 13 H 0.088 0.912 14 C -0.138 4.138 15 C -0.053 4.053 16 C -0.510 4.510 17 C -0.126 4.126 18 N -0.522 5.522 19 Si 0.707 3.293 20 H -0.186 1.186 21 H -0.210 1.210 22 H -0.213 1.213 23 C -0.027 4.027 24 C -0.138 4.138 25 N -0.163 5.163 26 C -0.051 4.051 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.022 0.978 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.304 -17.286 6.457 27.436 hybrid contribution 0.256 0.020 1.520 1.542 sum -20.048 -17.266 7.977 27.634 Atomic orbital electron populations 1.21759 0.94482 1.01930 1.02286 1.20474 0.96243 0.91815 1.03308 1.20947 1.00804 0.97788 0.94334 1.21417 0.96364 0.94102 0.98201 1.21915 1.01338 0.96010 0.98605 1.20538 0.96200 0.94949 0.88969 1.20207 0.94350 0.93722 1.01968 1.23114 0.85197 0.81953 0.79437 1.90678 1.65038 1.35897 1.46810 1.86490 1.40554 1.33823 1.66124 1.23460 0.82715 1.00506 0.93230 1.21116 0.97780 0.91626 0.98535 0.91238 1.21562 0.98325 0.99751 0.94142 1.19765 0.96639 0.92062 0.96823 1.20031 0.97606 1.36786 0.96577 1.24831 0.95037 0.96111 0.96594 1.69923 1.01176 1.42374 1.38731 0.86772 0.78313 0.80813 0.83415 1.18574 1.21037 1.21263 1.19380 0.96914 0.89726 0.96633 1.21605 0.95343 1.01653 0.95229 1.67441 1.09334 1.08768 1.30723 1.22627 0.94644 0.90320 0.97498 0.92154 0.92602 0.92412 0.90565 0.90807 0.84807 0.84492 0.85931 0.86163 0.91656 0.91878 0.94323 0.93237 0.95098 0.96791 0.92743 0.92499 0.97832 0.92830 0.95053 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.08 -0.46 6.09 -27.89 -0.17 -0.63 16 3 C -0.14 -1.15 5.15 -104.48 -0.54 -1.69 16 4 C -0.07 -0.60 9.86 -39.28 -0.39 -0.99 16 5 C -0.16 -1.42 9.71 -39.44 -0.38 -1.80 16 6 C 0.13 1.51 5.76 -82.59 -0.48 1.03 16 7 C -0.06 -0.68 6.21 -29.04 -0.18 -0.86 16 8 C 0.46 7.00 7.89 36.00 0.28 7.28 16 9 O -0.50 -9.10 15.10 -18.75 -0.28 -9.38 16 10 O -0.35 -5.78 9.68 -39.27 -0.38 -6.16 16 11 C 0.07 1.30 4.84 37.15 0.18 1.48 16 12 C -0.07 -1.41 2.33 -90.67 -0.21 -1.62 16 13 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.10 -2.07 5.15 -26.64 -0.14 -2.21 16 15 C -0.02 -0.36 5.47 -27.49 -0.15 -0.51 16 16 C -0.49 -13.02 5.44 -98.92 -0.54 -13.56 16 17 C 0.08 2.12 5.43 -17.82 -0.10 2.02 16 18 N -0.88 -25.58 12.81 55.43 0.71 -24.87 16 19 Si 0.88 21.03 27.63 -169.99 -4.70 16.34 16 20 H -0.26 -6.02 6.14 56.52 0.35 -5.68 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.01 0.27 5.99 -27.49 -0.16 0.11 16 24 C -0.10 -2.16 5.22 -26.63 -0.14 -2.30 16 25 N -0.45 -5.99 9.24 -9.47 -0.09 -6.07 16 26 C 0.11 1.12 10.86 -17.55 -0.19 0.93 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 32 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 33 H 0.14 0.85 7.95 -52.49 -0.42 0.43 16 34 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.12 0.90 7.87 -51.93 -0.41 0.49 16 36 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.06 1.09 8.13 -51.93 -0.42 0.66 16 38 H 0.04 0.72 7.71 -51.93 -0.40 0.32 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.72 5.02 -51.93 -0.26 0.46 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.06 1.55 7.11 -51.93 -0.37 1.18 16 44 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -32.32 380.07 -9.75 -42.06 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -7.80 Total: -3.98 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.93 Total: -13.66 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.62 Total: -30.95 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.66 Total: -15.54 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.70 Total: 16.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.32 -9.75 -42.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893026821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.895 kcal (2) G-P(sol) polarization free energy of solvation -32.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds