Wall clock time and date at job start Tue Mar 31 2020 12:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47096 * 2 1 4 4 C 1.38673 * 120.42119 * 90.00503 * 3 2 1 5 5 C 1.38624 * 118.42448 * 180.02562 * 4 3 2 6 6 C 1.38225 * 119.16349 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.62002 * 179.72812 * 6 5 4 8 8 C 1.50696 * 109.46958 * 124.99837 * 7 6 5 9 9 O 1.20826 * 120.00494 * 0.02562 * 8 7 6 10 10 O 1.34236 * 119.99399 * 179.97438 * 8 7 6 11 11 C 1.45206 * 116.99697 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47063 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.41223 * 304.85517 * 12 11 10 14 14 C 1.52954 * 109.41657 * 64.64457 * 12 11 10 15 15 C 1.53228 * 109.40971 * 183.70226 * 14 12 11 16 16 C 1.51269 * 108.53510 * 305.37742 * 15 14 12 17 17 C 1.37877 * 120.84580 * 231.36300 * 16 15 14 18 18 N 1.31517 * 119.99636 * 164.54901 * 17 16 15 19 19 Si 1.86792 * 120.00374 * 344.54906 * 17 16 15 20 20 H 1.48503 * 109.47202 * 354.63745 * 19 17 16 21 21 H 1.48505 * 109.47259 * 114.63409 * 19 17 16 22 22 H 1.48501 * 109.47651 * 234.63759 * 19 17 16 23 23 C 1.51269 * 118.30388 * 51.34255 * 16 15 14 24 24 C 1.52962 * 109.41273 * 184.99896 * 12 11 10 25 25 N 1.31856 * 120.76218 * 0.02562 * 6 5 4 26 26 C 1.31892 * 121.72550 * 359.97438 * 25 6 5 27 27 H 1.08997 * 109.47177 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47145 * 299.99726 * 1 2 3 29 29 H 1.09003 * 109.47672 * 59.99498 * 1 2 3 30 30 H 1.09002 * 109.46412 * 240.00248 * 2 1 3 31 31 H 1.08996 * 109.47326 * 120.00337 * 2 1 3 32 32 H 1.08000 * 120.78447 * 359.97438 * 4 3 2 33 33 H 1.08001 * 120.41984 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.46647 * 244.99822 * 7 6 5 35 35 H 1.09000 * 109.47183 * 4.99447 * 7 6 5 36 36 H 1.09008 * 109.47012 * 300.00088 * 11 10 8 37 37 H 1.09003 * 109.47132 * 59.99645 * 11 10 8 38 38 H 1.09001 * 109.48625 * 303.68743 * 14 12 11 39 39 H 1.09003 * 109.48140 * 63.72252 * 14 12 11 40 40 H 1.08999 * 109.63133 * 185.65531 * 15 14 12 41 41 H 1.09003 * 109.62245 * 65.08401 * 15 14 12 42 42 H 0.97004 * 119.99629 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.62884 * 188.93688 * 23 16 15 44 44 H 1.09006 * 109.62504 * 68.36494 * 23 16 15 45 45 H 1.08997 * 109.48078 * 296.27226 * 24 12 11 46 46 H 1.09001 * 109.48212 * 56.31750 * 24 12 11 47 47 H 1.07993 * 119.61601 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2665 2.0827 1.1958 5 6 2.7277 3.3891 1.1475 6 6 2.9380 3.9841 -0.0822 7 6 3.4335 5.4059 -0.1468 8 6 4.6880 5.4634 -0.9797 9 8 5.1338 4.4535 -1.4711 10 8 5.3096 6.6367 -1.1767 11 6 6.5123 6.6171 -1.9901 12 6 7.0760 8.0351 -2.1011 13 1 6.3045 8.7026 -2.4847 14 6 7.5202 8.5153 -0.7185 15 6 7.9988 9.9679 -0.8135 16 6 9.0711 10.0523 -1.8771 17 6 10.2867 10.6457 -1.6098 18 7 11.3056 10.4502 -2.4181 19 14 10.4863 11.7271 -0.0999 20 1 9.1706 11.8915 0.5687 21 1 11.4437 11.0917 0.8409 22 1 11.0035 13.0577 -0.5088 23 6 8.7760 9.4688 -3.2411 24 6 8.2693 8.0343 -3.0580 25 7 2.7046 3.3241 -1.1996 26 6 2.2654 2.0805 -1.1916 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0928 1.5924 2.1423 33 1 2.9204 3.9351 2.0592 34 1 2.6682 6.0371 -0.5984 35 1 3.6496 5.7614 0.8607 36 1 7.2541 5.9669 -1.5262 37 1 6.2720 6.2422 -2.9850 38 1 6.6814 8.4535 -0.0252 39 1 8.3354 7.8868 -0.3600 40 1 8.4093 10.2817 0.1462 41 1 7.1623 10.6118 -1.0852 42 1 12.1607 10.8679 -2.2303 43 1 9.6860 9.4619 -3.8411 44 1 8.0114 10.0665 -3.7374 45 1 9.0667 7.4172 -2.6441 46 1 7.9613 7.6316 -4.0229 47 1 2.0860 1.5718 -2.1272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893026821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:26 Heat of formation + Delta-G solvation = -101.269235 kcal Electronic energy + Delta-G solvation = -25597.627897 eV Core-core repulsion = 21936.316813 eV Total energy + Delta-G solvation = -3661.311084 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.76645 -40.94878 -38.95916 -37.30419 -35.88976 -34.51997 -33.38916 -32.43538 -31.60080 -30.97926 -28.99387 -26.73387 -24.82375 -24.59110 -23.45272 -22.93348 -22.27755 -21.56032 -20.82906 -18.71405 -18.06045 -17.80994 -17.70898 -17.24464 -16.65105 -16.33581 -16.20816 -15.44977 -15.32028 -14.89962 -14.74286 -14.61460 -14.56698 -14.34454 -13.99303 -13.95821 -13.73059 -13.59410 -13.34400 -13.09383 -12.89481 -12.80075 -12.70240 -12.51422 -12.39577 -12.17314 -11.84001 -11.77114 -11.67831 -11.50311 -11.41373 -11.26309 -10.71289 -10.69750 -10.57573 -10.31543 -10.30633 -9.75697 -8.17345 -6.04755 0.08399 0.39099 1.26260 1.38362 1.43914 1.53992 1.72451 2.43795 2.84437 3.08983 3.20185 3.71944 3.78896 3.84629 3.89921 4.00357 4.01851 4.08312 4.20148 4.29502 4.45373 4.47379 4.49701 4.50827 4.55439 4.63666 4.74178 4.77567 4.80545 4.91957 5.02876 5.06100 5.08321 5.09594 5.17783 5.18594 5.32266 5.34311 5.37270 5.42206 5.46831 5.54485 5.63604 5.68271 5.78613 5.79862 5.92653 6.40322 6.80179 6.99081 7.07632 7.50037 8.94330 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.035333 B = 0.002093 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.274978 B =13372.421541 C =13801.741047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.133 4.133 4 C -0.080 4.080 5 C -0.156 4.156 6 C 0.102 3.898 7 C -0.057 4.057 8 C 0.460 3.540 9 O -0.534 6.534 10 O -0.354 6.354 11 C 0.084 3.916 12 C -0.064 4.064 13 H 0.073 0.927 14 C -0.095 4.095 15 C -0.018 4.018 16 C -0.503 4.503 17 C 0.020 3.980 18 N -0.928 5.928 19 Si 0.935 3.065 20 H -0.243 1.243 21 H -0.284 1.284 22 H -0.288 1.288 23 C 0.005 3.995 24 C -0.093 4.093 25 N -0.497 5.497 26 C 0.082 3.918 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.139 0.861 35 H 0.156 0.844 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.032 0.968 41 H 0.021 0.979 42 H 0.261 0.739 43 H 0.023 0.977 44 H 0.005 0.995 45 H 0.038 0.962 46 H 0.050 0.950 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.216 -18.307 10.079 31.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.135 4.135 4 C -0.105 4.105 5 C -0.175 4.175 6 C -0.036 4.036 7 C -0.094 4.094 8 C 0.303 3.697 9 O -0.423 6.423 10 O -0.271 6.271 11 C 0.010 3.990 12 C -0.082 4.082 13 H 0.091 0.909 14 C -0.132 4.132 15 C -0.055 4.055 16 C -0.522 4.522 17 C -0.178 4.178 18 N -0.568 5.568 19 Si 0.761 3.239 20 H -0.167 1.167 21 H -0.210 1.210 22 H -0.215 1.215 23 C -0.032 4.032 24 C -0.131 4.131 25 N -0.205 5.205 26 C -0.075 4.075 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.182 0.818 33 H 0.184 0.816 34 H 0.157 0.843 35 H 0.174 0.826 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.023 0.977 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.724 -18.122 9.080 30.451 hybrid contribution 0.935 0.205 0.652 1.158 sum -21.789 -17.917 9.732 29.841 Atomic orbital electron populations 1.21735 0.93799 1.02665 1.01951 1.20533 0.96703 0.90277 1.04131 1.21234 0.99550 0.98822 0.93871 1.21849 0.95458 0.93987 0.99220 1.22259 1.00118 0.96450 0.98723 1.20809 0.97612 0.95499 0.89637 1.20402 0.92026 0.94096 1.02908 1.24081 0.85816 0.80813 0.78955 1.90667 1.66223 1.36938 1.48436 1.86485 1.39928 1.34788 1.65856 1.23114 0.83423 0.98709 0.93752 1.20934 0.96882 0.93047 0.97358 0.90860 1.21482 0.98899 0.97561 0.95298 1.19803 0.95880 0.94096 0.95763 1.20666 0.98250 1.35624 0.97690 1.25642 0.95094 0.97570 0.99520 1.70056 1.01706 1.44050 1.40958 0.85869 0.78900 0.78821 0.80304 1.16660 1.21009 1.21494 1.19364 0.95627 0.92178 0.96025 1.21438 0.95850 0.98892 0.96943 1.67356 1.10723 1.10123 1.32313 1.22872 0.95611 0.90202 0.98857 0.90889 0.92471 0.93220 0.90314 0.89430 0.81830 0.81551 0.84282 0.82606 0.92194 0.91657 0.91669 0.94217 0.94929 0.96088 0.92954 0.95783 0.97655 0.94327 0.93116 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.89 71.98 0.71 -0.43 16 2 C -0.08 -0.74 6.09 29.85 0.18 -0.56 16 3 C -0.13 -2.02 5.15 -19.77 -0.10 -2.13 16 4 C -0.08 -1.05 9.86 22.47 0.22 -0.83 16 5 C -0.16 -2.35 9.71 22.36 0.22 -2.13 16 6 C 0.10 2.17 5.76 42.55 0.24 2.42 16 7 C -0.06 -1.06 6.21 29.10 0.18 -0.88 16 8 C 0.46 13.23 7.89 71.23 0.56 13.79 16 9 O -0.53 -19.32 15.10 21.96 0.33 -18.99 16 10 O -0.35 -10.84 9.68 -51.48 -0.50 -11.34 16 11 C 0.08 2.83 4.84 71.98 0.35 3.18 16 12 C -0.06 -2.40 2.33 -10.82 -0.03 -2.43 16 13 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 14 C -0.09 -3.73 5.15 30.66 0.16 -3.57 16 15 C -0.02 -0.81 5.47 30.11 0.16 -0.64 16 16 C -0.50 -26.71 5.44 -16.17 -0.09 -26.80 16 17 C 0.02 1.11 5.43 84.65 0.46 1.57 16 18 N -0.93 -55.26 12.81 21.45 0.27 -54.98 16 19 Si 0.94 43.17 27.63 68.60 1.90 45.06 16 20 H -0.24 -10.39 6.14 99.48 0.61 -9.78 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 23 C 0.01 0.28 5.99 30.11 0.18 0.46 16 24 C -0.09 -4.00 5.22 30.66 0.16 -3.84 16 25 N -0.50 -12.92 9.24 -183.88 -1.70 -14.62 16 26 C 0.08 1.70 10.86 84.67 0.92 2.62 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 31 H 0.09 0.61 8.10 -2.39 -0.02 0.59 16 32 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 33 H 0.17 1.37 7.95 -2.91 -0.02 1.35 16 34 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.16 1.71 7.87 -2.39 -0.02 1.69 16 36 H 0.06 2.09 8.14 -2.38 -0.02 2.08 16 37 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 38 H 0.06 2.24 7.71 -2.39 -0.02 2.22 16 39 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.03 1.44 5.02 -2.39 -0.01 1.43 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 43 H 0.02 1.35 7.11 -2.39 -0.02 1.33 16 44 H 0.01 0.25 8.14 -2.38 -0.02 0.24 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -71.55 380.07 5.65 -65.91 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.85 Total: 9.16 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 4.50 Total: -20.19 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -1.43 Total: -69.61 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.17 Total: -30.32 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.90 Total: 45.06 kcal Total: -71.55 5.65 -65.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893026821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.364 kcal (2) G-P(sol) polarization free energy of solvation -71.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds