Wall clock time and date at job start Tue Mar 31 2020 13:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47135 * 154.10070 * 3 2 1 5 5 C 1.36940 * 120.00104 * 265.02020 * 4 3 2 6 6 H 1.07998 * 119.99773 * 194.52731 * 5 4 3 7 7 C 1.38816 * 119.99985 * 14.53735 * 5 4 3 8 8 N 1.31624 * 119.99930 * 18.33391 * 7 5 4 9 9 Si 1.86795 * 119.99862 * 198.33865 * 7 5 4 10 10 H 1.48503 * 109.47304 * 59.99957 * 9 7 5 11 11 H 1.48502 * 109.46951 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46874 * 299.99356 * 9 7 5 13 13 C 1.46502 * 119.99942 * 85.02428 * 4 3 2 14 14 C 1.50702 * 109.47156 * 84.68985 * 13 4 3 15 15 C 1.38153 * 119.99691 * 258.96105 * 14 13 4 16 16 C 1.38676 * 119.99940 * 180.02562 * 15 14 13 17 17 O 1.35985 * 119.99751 * 180.02562 * 16 15 14 18 18 C 1.42899 * 117.00239 * 359.97184 * 17 16 15 19 19 C 1.38710 * 120.00015 * 359.96916 * 16 15 14 20 20 C 1.38114 * 120.00367 * 0.05080 * 19 16 15 21 21 C 1.50697 * 120.00270 * 179.97438 * 20 19 16 22 22 C 1.52995 * 109.47110 * 359.97438 * 21 20 19 23 23 C 1.52994 * 109.47097 * 119.99835 * 21 20 19 24 24 C 1.52999 * 109.46786 * 239.99809 * 21 20 19 25 25 C 1.38671 * 120.00372 * 79.25899 * 14 13 4 26 26 O 1.35984 * 120.00349 * 0.02562 * 25 14 13 27 27 H 4.40640 * 5.51504 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.47573 * 34.10214 * 3 2 1 29 29 H 1.08999 * 109.47169 * 274.10210 * 3 2 1 30 30 H 0.96990 * 119.99820 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47049 * 324.68609 * 13 4 3 32 32 H 1.08996 * 109.47031 * 204.68349 * 13 4 3 33 33 H 1.08000 * 120.00226 * 0.02562 * 15 14 13 34 34 H 1.09000 * 109.46939 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46841 * 300.00035 * 18 17 16 36 36 H 1.09000 * 109.47291 * 60.00446 * 18 17 16 37 37 H 1.08001 * 120.00317 * 180.02562 * 19 16 15 38 38 H 1.09000 * 109.47301 * 60.00177 * 22 21 20 39 39 H 1.08998 * 109.47357 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47439 * 299.99777 * 22 21 20 41 41 H 1.09001 * 109.47219 * 60.00170 * 23 21 20 42 42 H 1.08998 * 109.47302 * 179.97438 * 23 21 20 43 43 H 1.08996 * 109.47582 * 300.00096 * 23 21 20 44 44 H 1.09004 * 109.47265 * 60.00528 * 24 21 20 45 45 H 1.09008 * 109.46675 * 179.97438 * 24 21 20 46 46 H 1.08992 * 109.47352 * 299.99921 * 24 21 20 47 47 H 0.96706 * 113.99615 * 269.40233 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2434 -0.6033 5 6 3.4590 1.2773 -1.9331 6 1 4.0316 2.1035 -2.3280 7 6 3.0526 0.2499 -2.7735 8 7 2.0765 -0.5532 -2.4066 9 14 3.8911 0.0072 -4.4249 10 1 5.3374 -0.2542 -4.2121 11 1 3.2776 -1.1490 -5.1264 12 1 3.7253 1.2314 -5.2489 13 6 3.2736 2.4498 0.2160 14 6 4.6072 2.4287 0.9176 15 6 4.6828 2.0592 2.2466 16 6 5.9099 2.0403 2.8924 17 8 5.9843 1.6761 4.2004 18 6 4.7590 1.3260 4.8471 19 6 7.0615 2.3918 2.2037 20 6 6.9860 2.7617 0.8751 21 6 8.2371 3.1441 0.1271 22 6 9.4429 3.0395 1.0629 23 6 8.4296 2.1997 -1.0611 24 6 8.1086 4.5820 -0.3798 25 6 5.7577 2.7862 0.2308 26 8 5.6826 3.1562 -1.0755 27 1 -1.0502 -0.0002 0.0003 28 1 3.0098 -0.8501 -0.5762 29 1 3.0093 -0.0727 1.0250 30 1 1.7928 -1.2713 -2.9937 31 1 2.4741 2.4809 0.9563 32 1 3.2127 3.3313 -0.4220 33 1 3.7862 1.7850 2.7827 34 1 4.9596 1.0568 5.8841 35 1 4.0772 2.1760 4.8181 36 1 4.3058 0.4788 4.3326 37 1 8.0172 2.3768 2.7064 38 1 9.5345 2.0153 1.4244 39 1 10.3479 3.3157 0.5218 40 1 9.3055 3.7126 1.9092 41 1 7.5705 2.2747 -1.7277 42 1 9.3342 2.4766 -1.6024 43 1 8.5210 1.1754 -0.7001 44 1 7.9715 5.2548 0.4668 45 1 9.0138 4.8588 -0.9205 46 1 7.2496 4.6569 -1.0464 47 1 5.7851 2.4236 -1.6983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:44 Heat of formation + Delta-G solvation = 21.418007 kcal Electronic energy + Delta-G solvation = -27982.874092 eV Core-core repulsion = 24326.883127 eV Total energy + Delta-G solvation = -3655.990966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.36934 -38.58963 -36.77491 -35.65109 -35.02790 -31.85641 -31.55249 -29.91289 -28.59685 -27.44416 -27.23950 -27.04272 -26.13369 -25.22734 -22.51950 -22.06045 -20.67370 -18.78846 -17.82615 -17.41662 -17.11880 -16.41329 -16.08888 -15.59210 -15.22297 -14.78539 -14.61517 -14.15333 -14.06232 -13.68278 -13.61872 -13.48986 -13.07788 -12.72957 -12.48907 -12.14605 -11.98466 -11.97408 -11.81111 -11.50445 -11.43504 -11.36713 -11.24573 -11.05016 -10.91052 -10.86653 -10.67675 -10.57316 -10.37656 -10.27207 -9.98351 -9.50687 -8.97707 -8.89178 -8.41957 -8.32582 -7.54834 -7.05721 -5.81774 -3.23908 1.66574 1.78254 3.33702 3.39045 3.41134 3.46410 3.93856 4.20305 4.36574 4.49442 4.75800 4.83584 5.05233 5.13259 5.16968 5.24894 5.26271 5.35047 5.42068 5.49886 5.55312 5.67110 5.69479 5.76407 5.79354 5.82900 5.89407 5.91845 5.99714 6.09597 6.16978 6.19722 6.27054 6.41861 6.47009 6.54688 6.59989 6.65772 6.69169 6.82921 7.03634 7.12238 7.30317 7.42832 7.61956 7.71068 8.23796 8.33297 9.07612 9.16662 9.73127 10.19078 11.21505 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.005862 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.019011 B = 4775.094946 C = 6761.173355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.091 4.091 3 C 0.266 3.734 4 N -0.579 5.579 5 C -0.264 4.264 6 H 0.085 0.915 7 C 0.001 3.999 8 N -0.893 5.893 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.183 3.817 14 C -0.066 4.066 15 C -0.192 4.192 16 C 0.110 3.890 17 O -0.324 6.324 18 C 0.029 3.971 19 C -0.152 4.152 20 C -0.067 4.067 21 C -0.018 4.018 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.140 4.140 25 C 0.102 3.898 26 O -0.490 6.490 27 H 0.190 0.810 28 H 0.105 0.895 29 H 0.030 0.970 30 H 0.255 0.745 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.129 0.871 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.968 4.948 9.658 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.327 4.327 2 C -0.094 4.094 3 C 0.141 3.859 4 N -0.298 5.298 5 C -0.392 4.392 6 H 0.102 0.898 7 C -0.197 4.197 8 N -0.537 5.537 9 Si 0.730 3.270 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.056 3.944 14 C -0.069 4.069 15 C -0.212 4.212 16 C 0.065 3.935 17 O -0.238 6.238 18 C -0.066 4.066 19 C -0.171 4.171 20 C -0.068 4.068 21 C -0.018 4.018 22 C -0.200 4.200 23 C -0.200 4.200 24 C -0.197 4.197 25 C 0.056 3.944 26 O -0.304 6.304 27 H 0.207 0.793 28 H 0.123 0.877 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.141 0.859 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.147 0.853 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.989 5.343 9.854 15.014 hybrid contribution -0.337 -0.831 -1.175 1.478 sum 9.652 4.512 8.679 13.742 Atomic orbital electron populations 1.24210 0.95374 1.04836 1.08310 1.24389 0.95337 0.96150 0.93560 1.17915 0.82600 0.91198 0.94187 1.44016 1.74688 1.04758 1.06329 1.19347 1.28757 1.07255 0.83871 0.89785 1.24922 0.97160 0.99714 0.97933 1.70084 1.26033 1.20450 1.37162 0.86403 0.79273 0.77531 0.83835 1.20971 1.21724 1.20894 1.19700 0.89533 0.91379 0.93742 1.21170 0.98614 0.94089 0.93066 1.21012 0.96383 1.07973 0.95790 1.18919 0.94113 0.97255 0.83171 1.86013 1.33326 1.82410 1.22015 1.22985 0.86061 1.00143 0.97429 1.20093 0.96788 1.06540 0.93653 1.19865 0.94103 0.99392 0.93454 1.19319 0.91549 0.96233 0.94688 1.21972 0.97018 1.01801 0.99214 1.21904 1.01960 0.98784 0.97313 1.21932 1.02454 0.94101 1.01249 1.17861 0.90563 1.00521 0.85446 1.84758 1.94738 1.37762 1.13152 0.79304 0.87702 0.95177 0.93451 0.93981 0.91237 0.85874 0.88773 0.92854 0.92606 0.85325 0.92409 0.92695 0.92453 0.91708 0.92595 0.92667 0.93254 0.93170 0.90255 0.75080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.00 19.25 29.55 0.57 -6.43 16 2 C -0.09 -2.21 11.70 -37.12 -0.43 -2.64 16 3 C 0.27 6.21 5.43 -6.83 -0.04 6.18 16 4 N -0.58 -13.43 2.48 -177.95 -0.44 -13.87 16 5 C -0.26 -6.56 8.99 -15.06 -0.14 -6.69 16 6 H 0.08 2.00 5.74 -52.49 -0.30 1.70 16 7 C 0.00 0.03 4.99 -17.43 -0.09 -0.05 16 8 N -0.89 -24.57 9.16 55.49 0.51 -24.06 16 9 Si 0.90 20.56 29.59 -169.99 -5.03 15.53 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.18 3.71 5.47 -5.19 -0.03 3.69 16 14 C -0.07 -1.20 5.47 -104.49 -0.57 -1.77 16 15 C -0.19 -3.18 8.65 -39.45 -0.34 -3.52 16 16 C 0.11 1.73 6.69 -39.25 -0.26 1.47 16 17 O -0.32 -4.65 10.50 -19.69 -0.21 -4.86 16 18 C 0.03 0.31 9.81 101.05 0.99 1.31 16 19 C -0.15 -2.31 8.91 -39.45 -0.35 -2.66 16 20 C -0.07 -1.04 4.77 -104.49 -0.50 -1.54 16 21 C -0.02 -0.23 0.75 -155.67 -0.12 -0.35 16 22 C -0.14 -1.58 7.13 37.16 0.26 -1.31 16 23 C -0.14 -1.83 8.26 37.15 0.31 -1.52 16 24 C -0.14 -1.77 8.25 37.16 0.31 -1.47 16 25 C 0.10 1.77 6.27 -39.24 -0.25 1.52 16 26 O -0.49 -8.53 8.26 -19.69 -0.16 -8.69 16 27 H 0.19 3.60 7.80 -54.08 -0.42 3.18 16 28 H 0.11 2.69 6.16 -51.93 -0.32 2.37 16 29 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.04 0.83 7.96 -51.93 -0.41 0.41 16 32 H 0.07 1.46 7.73 -51.93 -0.40 1.06 16 33 H 0.12 1.88 6.26 -52.49 -0.33 1.55 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 36 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 37 H 0.13 1.74 5.89 -52.49 -0.31 1.43 16 38 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 41 H 0.06 0.89 5.31 -51.93 -0.28 0.61 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 46 H 0.08 1.12 6.11 -51.93 -0.32 0.81 16 47 H 0.39 6.69 5.79 45.56 0.26 6.95 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -28.71 372.49 -6.88 -35.59 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.49 Total: 10.55 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -0.67 Total: -15.79 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.07 Total: -37.93 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.37 Total: -13.55 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.71 -6.88 -35.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.006 kcal (2) G-P(sol) polarization free energy of solvation -28.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds