Wall clock time and date at job start Tue Mar 31 2020 13:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47135 * 154.10070 * 3 2 1 5 5 C 1.36940 * 120.00104 * 265.02020 * 4 3 2 6 6 H 1.07998 * 119.99773 * 194.52731 * 5 4 3 7 7 C 1.38816 * 119.99985 * 14.53735 * 5 4 3 8 8 N 1.31624 * 119.99930 * 18.33391 * 7 5 4 9 9 Si 1.86795 * 119.99862 * 198.33865 * 7 5 4 10 10 H 1.48503 * 109.47304 * 59.99957 * 9 7 5 11 11 H 1.48502 * 109.46951 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.46874 * 299.99356 * 9 7 5 13 13 C 1.46502 * 119.99942 * 85.02428 * 4 3 2 14 14 C 1.50702 * 109.47156 * 84.68985 * 13 4 3 15 15 C 1.38153 * 119.99691 * 258.96105 * 14 13 4 16 16 C 1.38676 * 119.99940 * 180.02562 * 15 14 13 17 17 O 1.35985 * 119.99751 * 180.02562 * 16 15 14 18 18 C 1.42899 * 117.00239 * 359.97184 * 17 16 15 19 19 C 1.38710 * 120.00015 * 359.96916 * 16 15 14 20 20 C 1.38114 * 120.00367 * 0.05080 * 19 16 15 21 21 C 1.50697 * 120.00270 * 179.97438 * 20 19 16 22 22 C 1.52995 * 109.47110 * 359.97438 * 21 20 19 23 23 C 1.52994 * 109.47097 * 119.99835 * 21 20 19 24 24 C 1.52999 * 109.46786 * 239.99809 * 21 20 19 25 25 C 1.38671 * 120.00372 * 79.25899 * 14 13 4 26 26 O 1.35984 * 120.00349 * 0.02562 * 25 14 13 27 27 H 4.40640 * 5.51504 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.47573 * 34.10214 * 3 2 1 29 29 H 1.08999 * 109.47169 * 274.10210 * 3 2 1 30 30 H 0.96990 * 119.99820 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47049 * 324.68609 * 13 4 3 32 32 H 1.08996 * 109.47031 * 204.68349 * 13 4 3 33 33 H 1.08000 * 120.00226 * 0.02562 * 15 14 13 34 34 H 1.09000 * 109.46939 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.46841 * 300.00035 * 18 17 16 36 36 H 1.09000 * 109.47291 * 60.00446 * 18 17 16 37 37 H 1.08001 * 120.00317 * 180.02562 * 19 16 15 38 38 H 1.09000 * 109.47301 * 60.00177 * 22 21 20 39 39 H 1.08998 * 109.47357 * 179.97438 * 22 21 20 40 40 H 1.09004 * 109.47439 * 299.99777 * 22 21 20 41 41 H 1.09001 * 109.47219 * 60.00170 * 23 21 20 42 42 H 1.08998 * 109.47302 * 179.97438 * 23 21 20 43 43 H 1.08996 * 109.47582 * 300.00096 * 23 21 20 44 44 H 1.09004 * 109.47265 * 60.00528 * 24 21 20 45 45 H 1.09008 * 109.46675 * 179.97438 * 24 21 20 46 46 H 1.08992 * 109.47352 * 299.99921 * 24 21 20 47 47 H 0.96706 * 113.99615 * 269.40233 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2434 -0.6033 5 6 3.4590 1.2773 -1.9331 6 1 4.0316 2.1035 -2.3280 7 6 3.0526 0.2499 -2.7735 8 7 2.0765 -0.5532 -2.4066 9 14 3.8911 0.0072 -4.4249 10 1 5.3374 -0.2542 -4.2121 11 1 3.2776 -1.1490 -5.1264 12 1 3.7253 1.2314 -5.2489 13 6 3.2736 2.4498 0.2160 14 6 4.6072 2.4287 0.9176 15 6 4.6828 2.0592 2.2466 16 6 5.9099 2.0403 2.8924 17 8 5.9843 1.6761 4.2004 18 6 4.7590 1.3260 4.8471 19 6 7.0615 2.3918 2.2037 20 6 6.9860 2.7617 0.8751 21 6 8.2371 3.1441 0.1271 22 6 9.4429 3.0395 1.0629 23 6 8.4296 2.1997 -1.0611 24 6 8.1086 4.5820 -0.3798 25 6 5.7577 2.7862 0.2308 26 8 5.6826 3.1562 -1.0755 27 1 -1.0502 -0.0002 0.0003 28 1 3.0098 -0.8501 -0.5762 29 1 3.0093 -0.0727 1.0250 30 1 1.7928 -1.2713 -2.9937 31 1 2.4741 2.4809 0.9563 32 1 3.2127 3.3313 -0.4220 33 1 3.7862 1.7850 2.7827 34 1 4.9596 1.0568 5.8841 35 1 4.0772 2.1760 4.8181 36 1 4.3058 0.4788 4.3326 37 1 8.0172 2.3768 2.7064 38 1 9.5345 2.0153 1.4244 39 1 10.3479 3.3157 0.5218 40 1 9.3055 3.7126 1.9092 41 1 7.5705 2.2747 -1.7277 42 1 9.3342 2.4766 -1.6024 43 1 8.5210 1.1754 -0.7001 44 1 7.9715 5.2548 0.4668 45 1 9.0138 4.8588 -0.9205 46 1 7.2496 4.6569 -1.0464 47 1 5.7851 2.4236 -1.6983 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897164315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:42 Heat of formation + Delta-G solvation = 6.975225 kcal Electronic energy + Delta-G solvation = -27983.500378 eV Core-core repulsion = 24326.883127 eV Total energy + Delta-G solvation = -3656.617252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.59510 -39.72604 -38.25928 -37.05580 -36.34706 -33.54801 -33.34771 -31.43026 -29.77773 -28.60355 -28.31636 -28.05531 -27.87422 -26.68959 -23.94308 -23.46329 -22.08498 -19.96114 -19.46832 -18.89108 -18.36430 -18.02629 -17.42214 -17.01472 -16.57062 -16.12370 -15.76034 -15.47884 -15.36025 -15.21882 -15.07163 -14.99893 -14.37374 -14.12026 -13.69600 -13.37951 -13.26316 -13.20181 -13.05353 -12.91571 -12.74216 -12.69430 -12.51732 -12.40947 -12.40671 -12.16807 -12.05526 -11.93580 -11.85222 -11.63509 -11.41427 -10.90858 -10.80507 -10.64791 -10.27486 -9.62281 -8.98691 -8.76134 -7.78118 -5.20341 0.40049 0.48213 1.51602 1.52736 1.57743 2.30815 2.42324 2.51952 2.59697 2.73388 3.32995 3.57703 3.68461 3.85511 3.95287 4.08262 4.11861 4.18399 4.21059 4.28684 4.40455 4.41712 4.54153 4.62089 4.72797 4.75773 4.84330 4.87249 4.88827 4.97528 4.99809 5.04686 5.09774 5.12770 5.20795 5.29999 5.37244 5.39396 5.43004 5.51578 5.57939 5.64779 5.72261 5.82706 5.83965 6.30871 6.46799 6.98213 7.13516 7.33508 7.84855 8.28345 9.23358 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010796 B = 0.005862 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.019011 B = 4775.094946 C = 6761.173355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.129 4.129 3 C 0.273 3.727 4 N -0.588 5.588 5 C -0.257 4.257 6 H 0.091 0.909 7 C -0.050 4.050 8 N -0.921 5.921 9 Si 0.958 3.042 10 H -0.273 1.273 11 H -0.305 1.305 12 H -0.281 1.281 13 C 0.191 3.809 14 C -0.084 4.084 15 C -0.197 4.197 16 C 0.110 3.890 17 O -0.330 6.330 18 C 0.021 3.979 19 C -0.153 4.153 20 C -0.064 4.064 21 C -0.019 4.019 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.136 4.136 25 C 0.084 3.916 26 O -0.493 6.493 27 H 0.222 0.778 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.244 0.756 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.149 0.851 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.637 5.586 10.762 16.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.132 4.132 3 C 0.147 3.853 4 N -0.308 5.308 5 C -0.386 4.386 6 H 0.109 0.891 7 C -0.245 4.245 8 N -0.568 5.568 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.232 1.232 12 H -0.207 1.207 13 C 0.065 3.935 14 C -0.087 4.087 15 C -0.216 4.216 16 C 0.065 3.935 17 O -0.244 6.244 18 C -0.074 4.074 19 C -0.171 4.171 20 C -0.065 4.065 21 C -0.019 4.019 22 C -0.197 4.197 23 C -0.199 4.199 24 C -0.193 4.193 25 C 0.038 3.962 26 O -0.307 6.307 27 H 0.238 0.762 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.167 0.833 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 11.677 6.013 10.989 17.125 hybrid contribution -0.868 -0.975 -1.389 1.906 sum 10.810 5.038 9.600 15.310 Atomic orbital electron populations 1.25032 0.96403 1.03465 1.07002 1.24774 0.96182 0.97467 0.94807 1.17745 0.82624 0.90372 0.94530 1.44148 1.74792 1.05619 1.06201 1.19665 1.27439 1.06877 0.84637 0.89105 1.25554 0.98014 1.00122 1.00851 1.70263 1.27648 1.20994 1.37860 0.85477 0.78714 0.76625 0.80447 1.19835 1.23168 1.20750 1.19620 0.90995 0.89645 0.93212 1.20951 0.97625 0.96208 0.93924 1.21071 0.97350 1.07957 0.95264 1.19030 0.93870 0.96635 0.83921 1.86015 1.35162 1.82110 1.21107 1.23272 0.85147 1.00321 0.98644 1.20406 0.97562 1.05599 0.93575 1.20130 0.94404 0.98272 0.93698 1.19404 0.91258 0.96282 0.94931 1.21945 0.96584 1.02078 0.99052 1.21903 1.02308 0.98495 0.97215 1.21879 1.02562 0.93889 1.00978 1.18056 0.91242 1.01463 0.85391 1.84760 1.94880 1.37643 1.13381 0.76161 0.90424 0.93372 0.94629 0.93793 0.92632 0.85022 0.85772 0.92210 0.92823 0.83343 0.92294 0.90924 0.91997 0.93089 0.90609 0.93241 0.93332 0.91202 0.92223 0.75416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.46 19.25 74.32 1.43 -12.03 16 2 C -0.13 -6.30 11.70 31.12 0.36 -5.94 16 3 C 0.27 12.97 5.43 84.57 0.46 13.43 16 4 N -0.59 -27.71 2.48 -716.90 -1.78 -29.48 16 5 C -0.26 -12.95 8.99 84.03 0.76 -12.20 16 6 H 0.09 4.36 5.74 -2.91 -0.02 4.35 16 7 C -0.05 -2.65 4.99 84.86 0.42 -2.22 16 8 N -0.92 -51.88 9.16 21.65 0.20 -51.68 16 9 Si 0.96 43.00 29.59 68.60 2.03 45.03 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 13 C 0.19 7.85 5.47 85.63 0.47 8.32 16 14 C -0.08 -3.06 5.47 -19.78 -0.11 -3.16 16 15 C -0.20 -6.37 8.65 22.35 0.19 -6.18 16 16 C 0.11 3.32 6.69 22.49 0.15 3.47 16 17 O -0.33 -8.79 10.50 -93.38 -0.98 -9.77 16 18 C 0.02 0.40 9.81 113.37 1.11 1.51 16 19 C -0.15 -4.36 8.91 22.35 0.20 -4.16 16 20 C -0.06 -1.91 4.77 -19.78 -0.09 -2.00 16 21 C -0.02 -0.45 0.75 -52.93 -0.04 -0.49 16 22 C -0.14 -2.65 7.13 71.98 0.51 -2.14 16 23 C -0.14 -3.42 8.26 71.98 0.59 -2.83 16 24 C -0.14 -3.20 8.25 71.98 0.59 -2.60 16 25 C 0.08 2.90 6.27 22.49 0.14 3.04 16 26 O -0.49 -17.34 8.26 -93.37 -0.77 -18.11 16 27 H 0.22 8.00 7.80 -4.41 -0.03 7.96 16 28 H 0.08 4.13 6.16 -2.39 -0.01 4.11 16 29 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 30 H 0.24 13.76 8.31 -92.72 -0.77 12.99 16 31 H 0.04 1.75 7.96 -2.39 -0.02 1.73 16 32 H 0.06 2.39 7.73 -2.39 -0.02 2.37 16 33 H 0.13 3.92 6.26 -2.91 -0.02 3.90 16 34 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 36 H 0.05 1.08 7.66 -2.39 -0.02 1.06 16 37 H 0.15 3.60 5.89 -2.91 -0.02 3.59 16 38 H 0.06 1.11 7.51 -2.39 -0.02 1.09 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.13 7.51 -2.39 -0.02 1.11 16 41 H 0.05 1.36 5.31 -2.39 -0.01 1.35 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.06 1.64 6.11 -2.39 -0.01 1.63 16 47 H 0.39 13.52 5.79 -74.05 -0.43 13.09 16 Total: -1.00 -61.46 372.49 6.41 -55.05 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.55 Total: 35.14 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 7.16 Total: -26.18 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -1.58 Total: -81.17 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -1.75 Total: -27.87 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -61.46 6.41 -55.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.030 kcal (2) G-P(sol) polarization free energy of solvation -61.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds