Wall clock time and date at job start Tue Mar 31 2020 13:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32877 * 1 3 3 C 1.47123 * 119.99630 * 2 1 4 4 C 1.32869 * 119.99874 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00302 * 179.97438 * 4 3 2 6 6 C 1.52990 * 109.47240 * 125.00138 * 5 4 3 7 7 N 1.46901 * 109.47408 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00299 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47017 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47020 * 60.00213 * 9 8 7 11 11 O 1.42900 * 109.47151 * 299.99920 * 9 8 7 12 12 C 1.53002 * 109.47025 * 180.02562 * 9 8 7 13 13 O 1.42895 * 109.46981 * 185.00144 * 12 9 8 14 14 C 1.35678 * 116.99997 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81904 * 180.02562 * 14 13 12 16 16 C 1.36438 * 120.18360 * 179.71525 * 15 14 13 17 17 C 1.40829 * 119.81200 * 0.27972 * 16 15 14 18 18 C 1.41223 * 120.18048 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99992 * 335.14278 * 18 17 16 20 20 C 1.39886 * 120.00282 * 155.13982 * 18 17 16 21 21 N 1.30885 * 119.99755 * 342.15824 * 20 18 17 22 22 Si 1.86800 * 120.00131 * 162.15578 * 20 18 17 23 23 H 1.48502 * 109.47092 * 94.65822 * 22 20 18 24 24 H 1.48501 * 109.47092 * 214.65617 * 22 20 18 25 25 H 1.48497 * 109.47284 * 334.65885 * 22 20 18 26 26 C 1.40828 * 119.64615 * 359.97438 * 17 16 15 27 27 C 1.36442 * 119.80860 * 359.97438 * 26 17 16 28 28 H 1.08000 * 120.00199 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99598 * 180.02562 * 1 2 3 30 30 H 1.07989 * 120.00493 * 179.97438 * 2 1 3 31 31 H 1.08005 * 120.00310 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.99955 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.46708 * 5.00106 * 5 4 3 34 34 H 1.09003 * 109.47232 * 245.00244 * 5 4 3 35 35 H 1.08996 * 109.47386 * 60.00147 * 6 5 4 36 36 H 1.09003 * 109.47095 * 300.00191 * 6 5 4 37 37 H 1.00898 * 110.99463 * 303.95515 * 7 6 5 38 38 H 1.09007 * 109.46523 * 59.99766 * 8 7 6 39 39 H 1.08998 * 109.47110 * 299.99887 * 8 7 6 40 40 H 0.96699 * 114.00658 * 300.00074 * 11 9 8 41 41 H 1.08999 * 109.46877 * 65.00196 * 12 9 8 42 42 H 1.08996 * 109.46840 * 305.00499 * 12 9 8 43 43 H 1.07998 * 119.90702 * 359.97438 * 15 14 13 44 44 H 1.08003 * 120.09720 * 180.29575 * 16 15 14 45 45 H 0.96996 * 120.00147 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.10143 * 180.02562 * 26 17 16 47 47 H 1.07998 * 119.91122 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 3.3930 1.2742 0.0005 5 6 4.1465 2.5793 -0.0001 6 6 5.1175 2.6081 1.1818 7 7 5.8517 3.8805 1.1816 8 6 6.7953 3.9441 2.3057 9 6 7.5397 5.2804 2.2716 10 1 6.8231 6.0977 2.3522 11 8 8.2567 5.3949 1.0408 12 6 8.5230 5.3464 3.4420 13 8 9.1334 6.6378 3.4790 14 6 10.0384 6.8634 4.4644 15 6 10.6688 8.1023 4.5556 16 6 11.5757 8.3391 5.5470 17 6 11.8783 7.3249 6.4761 18 6 12.8154 7.5618 7.5057 19 1 13.5795 8.3144 7.3778 20 6 12.7540 6.8218 8.6912 21 7 11.6595 6.1755 9.0032 22 14 14.2341 6.7561 9.8289 23 1 14.0974 7.7967 10.8796 24 1 14.3099 5.4167 10.4657 25 1 15.4716 7.0028 9.0461 26 6 11.2405 6.0735 6.3736 27 6 10.3352 5.8533 5.3768 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8688 -0.9352 0.0004 31 1 1.5243 2.2095 -0.0004 32 1 3.9330 0.3389 0.0005 33 1 3.4415 3.4059 0.0887 34 1 4.7046 2.6762 -0.9313 35 1 5.8225 1.7816 1.0931 36 1 4.5594 2.5112 2.1131 37 1 6.3256 4.0243 0.3026 38 1 7.5122 3.1270 2.2249 39 1 6.2485 3.8563 3.2445 40 1 8.9134 4.6989 0.9018 41 1 9.2919 4.5845 3.3139 42 1 7.9888 5.1700 4.3756 43 1 10.4358 8.8789 3.8421 44 1 12.0601 9.3018 5.6193 45 1 11.6170 5.6621 9.8251 46 1 11.4667 5.2907 7.0823 47 1 9.8448 4.8944 5.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905424187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:55 Heat of formation + Delta-G solvation = -47.333944 kcal Electronic energy + Delta-G solvation = -24306.082978 eV Core-core repulsion = 20647.110705 eV Total energy + Delta-G solvation = -3658.972274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.13947 -38.03526 -36.94386 -36.11764 -35.27985 -33.34377 -32.80833 -30.62710 -29.63863 -29.14797 -28.06116 -25.29979 -24.37802 -22.72669 -21.99850 -20.97822 -20.68665 -20.35285 -20.02752 -17.37649 -17.18904 -16.61011 -16.54813 -16.01189 -15.44839 -15.24804 -15.13982 -14.75687 -14.23828 -14.01315 -13.95616 -13.88869 -13.34253 -13.00246 -12.76307 -12.44550 -12.30872 -12.26863 -12.13299 -11.98123 -11.76763 -11.48854 -11.44683 -11.32319 -11.16115 -11.12434 -11.03873 -10.82902 -10.57700 -10.07954 -9.89259 -9.79976 -9.37164 -9.01586 -8.74694 -8.69304 -7.66168 -7.01468 -6.73665 -4.25757 0.96718 2.69973 2.76128 2.95886 3.07351 3.11654 3.20958 3.52557 3.94499 4.16715 4.40097 4.46956 4.60609 4.61169 4.74956 4.78834 4.94020 4.97205 5.02464 5.13701 5.17216 5.29864 5.33996 5.36574 5.47377 5.60560 5.64936 5.67692 5.72155 5.92960 6.07152 6.09483 6.13741 6.28275 6.29624 6.50601 6.65607 6.72453 6.88735 7.06177 7.11022 7.27340 7.40196 7.55352 7.60831 7.89726 7.99615 8.14948 8.44120 8.64517 8.89619 8.98699 10.21276 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.001643 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.023982 B =17034.047079 C =17972.816902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.129 4.129 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.091 4.091 6 C 0.063 3.937 7 N -0.685 5.685 8 C 0.032 3.968 9 C 0.113 3.887 10 H 0.114 0.886 11 O -0.551 6.551 12 C 0.039 3.961 13 O -0.318 6.318 14 C -0.010 4.010 15 C -0.112 4.112 16 C -0.195 4.195 17 C 0.087 3.913 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.134 4.134 27 C -0.175 4.175 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.348 0.652 38 H 0.035 0.965 39 H 0.085 0.915 40 H 0.369 0.631 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.279 0.721 46 H 0.120 0.880 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.545 -12.058 -14.034 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.147 4.147 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.129 4.129 6 C -0.066 4.066 7 N -0.317 5.317 8 C -0.098 4.098 9 C 0.053 3.947 10 H 0.132 0.868 11 O -0.355 6.355 12 C -0.038 4.038 13 O -0.234 6.234 14 C -0.053 4.053 15 C -0.131 4.131 16 C -0.215 4.215 17 C 0.085 3.915 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.141 4.141 21 N -0.427 5.427 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.153 4.153 27 C -0.194 4.194 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.167 0.833 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.215 0.785 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.090 0.910 46 H 0.138 0.862 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.576 -11.192 -13.710 23.576 hybrid contribution 1.587 -1.559 0.743 2.345 sum -13.989 -12.751 -12.967 22.944 Atomic orbital electron populations 1.24375 0.95662 1.02017 0.99905 1.22010 0.95508 0.96711 1.00456 1.21976 0.94720 0.96820 1.02119 1.23357 0.94999 0.98499 0.98726 1.20676 0.98461 0.95452 0.98301 1.21909 0.95754 0.89898 0.99078 1.60308 1.30676 1.33938 1.06812 1.22530 0.94647 0.96690 0.95946 1.21966 0.92220 0.97576 0.82936 0.86781 1.86643 1.55298 1.54733 1.38794 1.23088 0.95652 0.86523 0.98545 1.85864 1.55663 1.31397 1.50428 1.18607 0.97705 0.96197 0.92834 1.19619 0.99331 0.94112 0.99995 1.20608 1.02706 0.98548 0.99642 1.17598 0.91723 0.90429 0.91789 1.19470 1.12881 1.18236 0.98753 0.90490 1.25870 0.96245 0.93586 0.98437 1.69843 1.25484 1.24511 1.22883 0.86340 0.82359 0.78335 0.79923 1.19627 1.20152 1.18471 1.20922 0.98967 0.97811 0.97635 1.20595 1.03133 0.97128 0.98515 0.88316 0.88170 0.87106 0.86787 0.87184 0.90362 0.90793 0.95183 0.90807 0.83261 0.94683 0.89686 0.78465 0.93056 0.92232 0.88455 0.88182 0.91036 0.86197 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 14.43 28.88 0.42 -0.65 16 2 C -0.13 -0.85 9.83 -37.83 -0.37 -1.22 16 3 C -0.14 -0.97 9.44 -37.83 -0.36 -1.33 16 4 C -0.14 -0.93 9.22 -36.16 -0.33 -1.26 16 5 C -0.09 -0.64 5.92 -27.89 -0.17 -0.80 16 6 C 0.06 0.49 5.67 -3.83 -0.02 0.47 16 7 N -0.69 -6.39 6.50 -113.78 -0.74 -7.12 16 8 C 0.03 0.31 5.39 -3.82 -0.02 0.29 16 9 C 0.11 1.42 3.52 -26.73 -0.09 1.32 16 10 H 0.11 1.59 8.14 -51.93 -0.42 1.16 16 11 O -0.55 -7.06 12.64 -40.11 -0.51 -7.57 16 12 C 0.04 0.61 4.36 37.16 0.16 0.77 16 13 O -0.32 -6.54 10.09 -23.62 -0.24 -6.78 16 14 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 15 C -0.11 -2.64 9.92 -39.83 -0.40 -3.04 16 16 C -0.20 -4.86 9.74 -39.25 -0.38 -5.24 16 17 C 0.09 2.33 5.57 -106.80 -0.60 1.73 16 18 C -0.46 -12.33 9.04 -37.83 -0.34 -12.67 16 19 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 20 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 21 N -0.80 -20.74 10.97 55.54 0.61 -20.13 16 22 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 26 C -0.13 -3.48 8.64 -39.25 -0.34 -3.82 16 27 C -0.17 -4.10 8.97 -39.83 -0.36 -4.46 16 28 H 0.10 0.52 8.05 -52.49 -0.42 0.10 16 29 H 0.10 0.46 8.06 -52.49 -0.42 0.03 16 30 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.11 0.76 7.87 -52.48 -0.41 0.35 16 32 H 0.11 0.66 8.05 -52.49 -0.42 0.24 16 33 H 0.08 0.59 7.82 -51.93 -0.41 0.19 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.35 3.13 8.12 -39.29 -0.32 2.81 16 38 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.37 3.47 9.05 45.56 0.41 3.88 16 41 H 0.05 0.75 7.63 -51.93 -0.40 0.36 16 42 H 0.06 0.91 7.66 -51.93 -0.40 0.51 16 43 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 44 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 45 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 46 H 0.12 3.19 6.18 -52.49 -0.32 2.87 16 47 H 0.09 1.91 6.27 -52.49 -0.33 1.58 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -29.53 396.61 -10.27 -39.80 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.80 Total: 10.78 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: -3.55 Total: -28.59 kcal Atomic # 7 Polarization: -27.12 SS G_CDS: -0.13 Total: -27.25 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.75 Total: -14.35 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.53 -10.27 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905424187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.532 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds