Wall clock time and date at job start Tue Mar 31 2020 13:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32877 * 1 3 3 C 1.47123 * 119.99630 * 2 1 4 4 C 1.32869 * 119.99874 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.00302 * 179.97438 * 4 3 2 6 6 C 1.52990 * 109.47240 * 125.00138 * 5 4 3 7 7 N 1.46901 * 109.47408 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00299 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47017 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47020 * 60.00213 * 9 8 7 11 11 O 1.42900 * 109.47151 * 299.99920 * 9 8 7 12 12 C 1.53002 * 109.47025 * 180.02562 * 9 8 7 13 13 O 1.42895 * 109.46981 * 185.00144 * 12 9 8 14 14 C 1.35678 * 116.99997 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81904 * 180.02562 * 14 13 12 16 16 C 1.36438 * 120.18360 * 179.71525 * 15 14 13 17 17 C 1.40829 * 119.81200 * 0.27972 * 16 15 14 18 18 C 1.41223 * 120.18048 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99992 * 335.14278 * 18 17 16 20 20 C 1.39886 * 120.00282 * 155.13982 * 18 17 16 21 21 N 1.30885 * 119.99755 * 342.15824 * 20 18 17 22 22 Si 1.86800 * 120.00131 * 162.15578 * 20 18 17 23 23 H 1.48502 * 109.47092 * 94.65822 * 22 20 18 24 24 H 1.48501 * 109.47092 * 214.65617 * 22 20 18 25 25 H 1.48497 * 109.47284 * 334.65885 * 22 20 18 26 26 C 1.40828 * 119.64615 * 359.97438 * 17 16 15 27 27 C 1.36442 * 119.80860 * 359.97438 * 26 17 16 28 28 H 1.08000 * 120.00199 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.99598 * 180.02562 * 1 2 3 30 30 H 1.07989 * 120.00493 * 179.97438 * 2 1 3 31 31 H 1.08005 * 120.00310 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.99955 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.46708 * 5.00106 * 5 4 3 34 34 H 1.09003 * 109.47232 * 245.00244 * 5 4 3 35 35 H 1.08996 * 109.47386 * 60.00147 * 6 5 4 36 36 H 1.09003 * 109.47095 * 300.00191 * 6 5 4 37 37 H 1.00898 * 110.99463 * 303.95515 * 7 6 5 38 38 H 1.09007 * 109.46523 * 59.99766 * 8 7 6 39 39 H 1.08998 * 109.47110 * 299.99887 * 8 7 6 40 40 H 0.96699 * 114.00658 * 300.00074 * 11 9 8 41 41 H 1.08999 * 109.46877 * 65.00196 * 12 9 8 42 42 H 1.08996 * 109.46840 * 305.00499 * 12 9 8 43 43 H 1.07998 * 119.90702 * 359.97438 * 15 14 13 44 44 H 1.08003 * 120.09720 * 180.29575 * 16 15 14 45 45 H 0.96996 * 120.00147 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.10143 * 180.02562 * 26 17 16 47 47 H 1.07998 * 119.91122 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2742 0.0000 4 6 3.3930 1.2742 0.0005 5 6 4.1465 2.5793 -0.0001 6 6 5.1175 2.6081 1.1818 7 7 5.8517 3.8805 1.1816 8 6 6.7953 3.9441 2.3057 9 6 7.5397 5.2804 2.2716 10 1 6.8231 6.0977 2.3522 11 8 8.2567 5.3949 1.0408 12 6 8.5230 5.3464 3.4420 13 8 9.1334 6.6378 3.4790 14 6 10.0384 6.8634 4.4644 15 6 10.6688 8.1023 4.5556 16 6 11.5757 8.3391 5.5470 17 6 11.8783 7.3249 6.4761 18 6 12.8154 7.5618 7.5057 19 1 13.5795 8.3144 7.3778 20 6 12.7540 6.8218 8.6912 21 7 11.6595 6.1755 9.0032 22 14 14.2341 6.7561 9.8289 23 1 14.0974 7.7967 10.8796 24 1 14.3099 5.4167 10.4657 25 1 15.4716 7.0028 9.0461 26 6 11.2405 6.0735 6.3736 27 6 10.3352 5.8533 5.3768 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8688 -0.9352 0.0004 31 1 1.5243 2.2095 -0.0004 32 1 3.9330 0.3389 0.0005 33 1 3.4415 3.4059 0.0887 34 1 4.7046 2.6762 -0.9313 35 1 5.8225 1.7816 1.0931 36 1 4.5594 2.5112 2.1131 37 1 6.3256 4.0243 0.3026 38 1 7.5122 3.1270 2.2249 39 1 6.2485 3.8563 3.2445 40 1 8.9134 4.6989 0.9018 41 1 9.2919 4.5845 3.3139 42 1 7.9888 5.1700 4.3756 43 1 10.4358 8.8789 3.8421 44 1 12.0601 9.3018 5.6193 45 1 11.6170 5.6621 9.8251 46 1 11.4667 5.2907 7.0823 47 1 9.8448 4.8944 5.2969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905424187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:54 Heat of formation + Delta-G solvation = -65.115370 kcal Electronic energy + Delta-G solvation = -24306.854039 eV Core-core repulsion = 20647.110705 eV Total energy + Delta-G solvation = -3659.743334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.66800 -39.21822 -38.01867 -37.34638 -35.97748 -35.20483 -33.43002 -31.79042 -31.49311 -30.74706 -28.92639 -26.83768 -25.68953 -23.50879 -23.20453 -22.57368 -22.01924 -21.25847 -20.52289 -19.27393 -18.68914 -17.81905 -17.57678 -17.04117 -16.76712 -16.18641 -15.99832 -15.83961 -15.68843 -15.31565 -15.18598 -14.73638 -14.69396 -14.19535 -14.06249 -13.81366 -13.63418 -13.46425 -13.21897 -12.98868 -12.81443 -12.75147 -12.71855 -12.67953 -12.31300 -12.09637 -11.90418 -11.83524 -11.69968 -11.67448 -11.58995 -11.23584 -11.01227 -10.86466 -9.57394 -9.42948 -9.20164 -8.91205 -8.60580 -6.22920 0.48186 0.93307 1.03978 1.39783 1.49349 1.55701 2.19574 2.22895 2.38807 2.72067 3.22849 3.45746 3.69923 3.87568 3.96945 4.00268 4.02931 4.11183 4.21480 4.25157 4.29007 4.35336 4.38654 4.47786 4.50357 4.59124 4.69277 4.76348 4.87882 4.90585 4.99066 5.02328 5.06700 5.14867 5.16577 5.36512 5.45056 5.51782 5.65845 5.66802 5.80124 5.95437 5.96661 6.03194 6.05893 6.23431 6.42024 6.55748 6.76345 6.80869 6.94966 7.09845 8.36530 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.001643 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.023982 B =17034.047079 C =17972.816902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.086 4.086 6 C 0.066 3.934 7 N -0.694 5.694 8 C 0.041 3.959 9 C 0.125 3.875 10 H 0.099 0.901 11 O -0.564 6.564 12 C 0.031 3.969 13 O -0.328 6.328 14 C -0.002 4.002 15 C -0.122 4.122 16 C -0.205 4.205 17 C 0.054 3.946 18 C -0.500 4.500 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.832 5.832 22 Si 0.981 3.019 23 H -0.264 1.264 24 H -0.266 1.266 25 H -0.259 1.259 26 C -0.154 4.154 27 C -0.175 4.175 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.351 0.649 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.384 0.616 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.287 0.713 46 H 0.107 0.893 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.866 -13.271 -14.539 24.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.163 4.163 3 C -0.165 4.165 4 C -0.158 4.158 5 C -0.123 4.123 6 C -0.063 4.063 7 N -0.326 5.326 8 C -0.088 4.088 9 C 0.066 3.934 10 H 0.117 0.883 11 O -0.370 6.370 12 C -0.046 4.046 13 O -0.244 6.244 14 C -0.046 4.046 15 C -0.141 4.141 16 C -0.224 4.224 17 C 0.052 3.948 18 C -0.530 4.530 19 H 0.094 0.906 20 C -0.179 4.179 21 N -0.459 5.459 22 Si 0.802 3.198 23 H -0.189 1.189 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.173 4.173 27 C -0.194 4.194 28 H 0.119 0.881 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.170 0.830 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.233 0.767 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.125 0.875 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.913 -12.417 -14.241 24.702 hybrid contribution 1.537 -1.201 0.757 2.092 sum -14.376 -13.618 -13.483 23.956 Atomic orbital electron populations 1.24570 0.95598 1.02805 0.98769 1.22143 0.95941 0.96835 1.01388 1.22097 0.95036 0.97124 1.02265 1.23400 0.94944 0.98667 0.98750 1.20607 0.98135 0.95328 0.98239 1.21891 0.95799 0.89435 0.99134 1.60283 1.30655 1.34976 1.06732 1.22386 0.94821 0.95301 0.96331 1.21796 0.91224 0.98674 0.81736 0.88320 1.86609 1.55961 1.55895 1.38561 1.23461 0.96356 0.84576 1.00176 1.85862 1.54984 1.34326 1.49248 1.18732 0.97306 0.95805 0.92770 1.19893 0.99025 0.95105 1.00063 1.20799 1.03158 0.98709 0.99776 1.17963 0.92718 0.91347 0.92810 1.19723 1.13639 1.19711 0.99934 0.90644 1.26709 0.98952 0.92657 0.99559 1.69889 1.27202 1.25003 1.23788 0.85216 0.78232 0.78774 0.77616 1.18859 1.19080 1.18302 1.20902 1.00418 0.97466 0.98555 1.20807 1.02436 0.98468 0.97682 0.88098 0.86907 0.86374 0.86937 0.86359 0.91197 0.90206 0.94327 0.91382 0.82985 0.93184 0.89537 0.76671 0.91786 0.91858 0.86485 0.87283 0.90245 0.87525 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 14.43 66.64 0.96 -0.93 16 2 C -0.15 -1.76 9.83 23.43 0.23 -1.53 16 3 C -0.15 -1.95 9.44 23.43 0.22 -1.73 16 4 C -0.14 -1.71 9.22 24.51 0.23 -1.48 16 5 C -0.09 -1.08 5.92 29.84 0.18 -0.90 16 6 C 0.07 0.92 5.67 86.30 0.49 1.41 16 7 N -0.69 -11.67 6.50 -513.89 -3.34 -15.01 16 8 C 0.04 0.73 5.39 86.30 0.47 1.19 16 9 C 0.13 2.94 3.52 30.59 0.11 3.05 16 10 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 11 O -0.56 -13.38 12.64 -144.31 -1.82 -15.20 16 12 C 0.03 0.90 4.36 71.98 0.31 1.21 16 13 O -0.33 -13.06 10.09 -85.29 -0.86 -13.92 16 14 C 0.00 -0.10 6.71 22.79 0.15 0.05 16 15 C -0.12 -5.73 9.92 22.11 0.22 -5.51 16 16 C -0.20 -10.32 9.74 22.48 0.22 -10.10 16 17 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 18 C -0.50 -27.23 9.04 23.40 0.21 -27.02 16 19 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 20 C 0.04 1.77 5.13 85.23 0.44 2.21 16 21 N -0.83 -43.63 10.97 21.82 0.24 -43.39 16 22 Si 0.98 38.26 29.60 68.60 2.03 40.29 16 23 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 24 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 C -0.15 -8.12 8.64 22.48 0.19 -7.93 16 27 C -0.18 -8.14 8.97 22.11 0.20 -7.94 16 28 H 0.10 0.98 8.05 -2.91 -0.02 0.95 16 29 H 0.11 0.85 8.06 -2.91 -0.02 0.83 16 30 H 0.12 1.20 8.06 -2.92 -0.02 1.18 16 31 H 0.11 1.46 7.87 -2.91 -0.02 1.43 16 32 H 0.12 1.24 8.05 -2.91 -0.02 1.21 16 33 H 0.07 1.00 7.82 -2.38 -0.02 0.98 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.04 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.35 5.63 8.12 -89.70 -0.73 4.90 16 38 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.38 6.34 9.05 -74.06 -0.67 5.67 16 41 H 0.06 1.72 7.63 -2.39 -0.02 1.71 16 42 H 0.06 1.82 7.66 -2.39 -0.02 1.80 16 43 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 45 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 46 H 0.11 5.83 6.18 -2.91 -0.02 5.81 16 47 H 0.12 4.74 6.27 -2.91 -0.02 4.72 16 Total: -1.00 -63.33 396.61 0.51 -62.82 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.44 Total: 37.54 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 4.71 Total: -53.12 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -3.10 Total: -58.41 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -2.68 Total: -29.12 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -63.33 0.51 -62.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905424187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.296 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds