Wall clock time and date at job start Tue Mar 31 2020 13:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32878 * 1 3 3 C 1.47112 * 119.99765 * 2 1 4 4 C 1.32875 * 120.00081 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00191 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47266 * 124.99485 * 5 4 3 7 7 N 1.46905 * 109.47305 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99741 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46990 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47543 * 305.00561 * 9 8 7 11 11 O 1.42898 * 109.47149 * 65.00019 * 9 8 7 12 12 C 1.52993 * 109.47473 * 185.00267 * 9 8 7 13 13 O 1.42899 * 109.47626 * 175.00251 * 12 9 8 14 14 C 1.35672 * 117.00494 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81787 * 179.97438 * 14 13 12 16 16 C 1.36444 * 120.18284 * 180.27547 * 15 14 13 17 17 C 1.40831 * 119.80941 * 359.50037 * 16 15 14 18 18 C 1.41217 * 120.17754 * 180.22537 * 17 16 15 19 19 H 1.08003 * 120.00517 * 204.70445 * 18 17 16 20 20 C 1.39895 * 119.99935 * 24.71470 * 18 17 16 21 21 N 1.30879 * 120.00135 * 17.78648 * 20 18 17 22 22 Si 1.86799 * 119.99868 * 197.79097 * 20 18 17 23 23 H 1.48499 * 109.47287 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46896 * 119.99819 * 22 20 18 25 25 H 1.48501 * 109.46845 * 239.99449 * 22 20 18 26 26 C 1.40831 * 119.64514 * 0.50352 * 17 16 15 27 27 C 1.36435 * 119.81054 * 359.74684 * 26 17 16 28 28 H 1.07999 * 119.99895 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99670 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00184 * 179.97438 * 2 1 3 31 31 H 1.08008 * 120.00609 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99867 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.47461 * 4.99862 * 5 4 3 34 34 H 1.09002 * 109.47055 * 244.99561 * 5 4 3 35 35 H 1.09004 * 109.46951 * 60.00218 * 6 5 4 36 36 H 1.08999 * 109.47584 * 299.99748 * 6 5 4 37 37 H 1.00897 * 111.00147 * 303.95308 * 7 6 5 38 38 H 1.08998 * 109.47210 * 60.00824 * 8 7 6 39 39 H 1.08997 * 109.47619 * 300.00530 * 8 7 6 40 40 H 0.96702 * 113.99634 * 60.00268 * 11 9 8 41 41 H 1.08997 * 109.47362 * 55.00222 * 12 9 8 42 42 H 1.09001 * 109.47329 * 294.99817 * 12 9 8 43 43 H 1.07997 * 119.91292 * 0.02562 * 15 14 13 44 44 H 1.07996 * 120.09288 * 179.72467 * 16 15 14 45 45 H 0.97001 * 120.00430 * 180.02562 * 21 20 18 46 46 H 1.07999 * 120.09616 * 179.73126 * 26 17 16 47 47 H 1.07993 * 119.91274 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3930 1.2741 -0.0005 5 6 4.1465 2.5792 -0.0011 6 6 5.1184 2.6075 1.1802 7 7 5.8533 3.8795 1.1793 8 6 6.7977 3.9426 2.3027 9 6 7.5421 5.2789 2.2687 10 1 8.0156 5.4064 1.2952 11 8 6.6173 6.3452 2.4919 12 6 8.6121 5.2946 3.3621 13 8 9.3838 6.4927 3.2564 14 6 10.3827 6.6637 4.1585 15 6 11.1721 7.8105 4.1088 16 6 12.1822 7.9874 5.0088 17 6 12.4189 7.0117 5.9964 18 6 13.4592 7.1892 6.9347 19 1 13.9064 6.3309 7.4142 20 6 13.9106 8.4769 7.2433 21 7 13.1713 9.5168 6.9520 22 14 15.5686 8.7119 8.0711 23 1 16.2035 7.3879 8.2926 24 1 16.4422 9.5413 7.2027 25 1 15.3778 9.3935 9.3766 26 6 11.6163 5.8553 6.0395 27 6 10.6136 5.6912 5.1290 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8688 -0.9353 0.0004 31 1 1.5243 2.2095 -0.0004 32 1 3.9331 0.3389 -0.0005 33 1 3.4416 3.4058 0.0885 34 1 4.7040 2.6764 -0.9327 35 1 5.8233 1.7810 1.0906 36 1 4.5610 2.5103 2.1118 37 1 6.3269 4.0229 0.3000 38 1 7.5140 3.1251 2.2216 39 1 6.2515 3.8552 3.2419 40 1 6.1580 6.2960 3.3414 41 1 9.2653 4.4301 3.2438 42 1 8.1327 5.2565 4.3403 43 1 10.9866 8.5596 3.3533 44 1 12.7961 8.8749 4.9662 45 1 13.4844 10.4097 7.1657 46 1 11.7943 5.1003 6.7911 47 1 9.9974 4.8049 5.1603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905424189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:05 Heat of formation + Delta-G solvation = -45.568224 kcal Electronic energy + Delta-G solvation = -24225.298413 eV Core-core repulsion = 20566.402706 eV Total energy + Delta-G solvation = -3658.895707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.11592 -37.98142 -36.94643 -36.10289 -35.30665 -33.31565 -32.83692 -30.63533 -29.66500 -29.03249 -28.08808 -25.30299 -24.41072 -22.75320 -22.05468 -20.84904 -20.60030 -20.54941 -20.04079 -17.36354 -17.22225 -16.77934 -16.19668 -15.96989 -15.41390 -15.24260 -15.17353 -14.79287 -14.17530 -14.12998 -13.99845 -13.89149 -13.32684 -13.00373 -12.83027 -12.35620 -12.25495 -12.23542 -12.15393 -12.09383 -11.77048 -11.51953 -11.40526 -11.32425 -11.16819 -11.15993 -10.95343 -10.78525 -10.60247 -9.98736 -9.91276 -9.80951 -9.33697 -9.02796 -8.74427 -8.69219 -7.64639 -7.03210 -6.72416 -4.25804 0.95455 2.68760 2.76806 2.94749 3.08791 3.13847 3.20214 3.51395 3.95173 4.14627 4.41956 4.50122 4.59466 4.61830 4.74251 4.76426 4.93807 4.96086 5.01251 5.09715 5.20846 5.28362 5.28592 5.33928 5.44398 5.59135 5.60636 5.67174 5.71355 5.91683 6.01825 6.05485 6.12581 6.22633 6.28521 6.49345 6.64123 6.73229 6.97405 7.04235 7.10960 7.18403 7.46178 7.55503 7.76553 7.79005 8.00596 8.20302 8.45175 8.65314 8.89825 8.98556 10.22070 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.046086 B = 0.001507 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.414792 B =18576.683380 C =18895.323965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.129 4.129 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.091 4.091 6 C 0.063 3.937 7 N -0.681 5.681 8 C 0.031 3.969 9 C 0.115 3.885 10 H 0.103 0.897 11 O -0.541 6.541 12 C 0.038 3.962 13 O -0.317 6.317 14 C -0.010 4.010 15 C -0.118 4.118 16 C -0.133 4.133 17 C 0.088 3.912 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.906 3.094 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.199 4.199 27 C -0.168 4.168 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.073 0.927 37 H 0.343 0.657 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.371 0.629 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.280 0.720 46 H 0.094 0.906 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.051 -14.157 -11.278 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.147 4.147 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.129 4.129 6 C -0.066 4.066 7 N -0.312 5.312 8 C -0.099 4.099 9 C 0.055 3.945 10 H 0.121 0.879 11 O -0.345 6.345 12 C -0.039 4.039 13 O -0.233 6.233 14 C -0.053 4.053 15 C -0.137 4.137 16 C -0.152 4.152 17 C 0.085 3.915 18 C -0.494 4.494 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.425 5.425 22 Si 0.731 3.269 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.219 4.219 27 C -0.187 4.187 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.161 0.839 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.218 0.782 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.143 0.857 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.389 -13.244 -11.643 24.766 hybrid contribution 1.238 -0.996 0.941 1.847 sum -16.151 -14.241 -10.702 24.046 Atomic orbital electron populations 1.24377 0.95663 1.02021 0.99894 1.22009 0.95508 0.96712 1.00466 1.21977 0.94722 0.96819 1.02106 1.23359 0.95001 0.98501 0.98740 1.20675 0.98475 0.95457 0.98278 1.21914 0.95757 0.89870 0.99079 1.60315 1.30708 1.33961 1.06209 1.22573 0.94547 0.97093 0.95672 1.21836 0.87615 0.85944 0.99106 0.87915 1.86631 1.57783 1.48121 1.41926 1.23110 0.93536 0.88692 0.98592 1.85886 1.44679 1.39323 1.53370 1.18631 0.94092 0.97812 0.94755 1.19844 0.97399 0.95417 1.01066 1.20981 0.98523 1.01308 0.94434 1.17602 0.91454 0.90839 0.91564 1.19493 1.15924 0.92807 1.21147 0.90539 1.25877 0.98010 0.95664 0.94618 1.69841 1.35176 0.99816 1.37618 0.86296 0.82149 0.79372 0.79091 1.18489 1.19730 1.20071 1.20555 0.98866 1.01066 1.01373 1.20389 1.01483 0.98195 0.98631 0.88168 0.88312 0.87108 0.86783 0.87192 0.90326 0.90812 0.95192 0.90837 0.83902 0.94038 0.90304 0.78202 0.92604 0.92869 0.88420 0.85673 0.90952 0.88787 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 14.43 28.88 0.42 -0.62 16 2 C -0.13 -0.83 9.83 -37.83 -0.37 -1.20 16 3 C -0.14 -0.95 9.44 -37.83 -0.36 -1.31 16 4 C -0.14 -0.90 9.22 -36.16 -0.33 -1.24 16 5 C -0.09 -0.62 5.92 -27.89 -0.17 -0.78 16 6 C 0.06 0.48 5.67 -3.82 -0.02 0.45 16 7 N -0.68 -6.14 6.45 -113.78 -0.73 -6.88 16 8 C 0.03 0.29 5.32 -3.82 -0.02 0.27 16 9 C 0.12 1.43 3.43 -26.74 -0.09 1.34 16 10 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 11 O -0.54 -7.55 13.25 -40.09 -0.53 -8.09 16 12 C 0.04 0.58 4.36 37.15 0.16 0.74 16 13 O -0.32 -6.52 10.09 -23.57 -0.24 -6.76 16 14 C -0.01 -0.23 6.71 -38.78 -0.26 -0.49 16 15 C -0.12 -2.91 9.92 -39.83 -0.40 -3.30 16 16 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 17 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 18 C -0.46 -12.34 9.04 -37.83 -0.34 -12.69 16 19 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 20 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 21 N -0.80 -20.77 10.96 55.55 0.61 -20.16 16 22 Si 0.91 18.70 29.59 -169.99 -5.03 13.66 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.20 -4.90 9.74 -39.25 -0.38 -5.28 16 27 C -0.17 -3.80 8.96 -39.83 -0.36 -4.16 16 28 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 29 H 0.10 0.51 8.05 -52.49 -0.42 0.09 16 30 H 0.11 0.61 8.06 -52.49 -0.42 0.18 16 31 H 0.11 0.75 7.87 -52.48 -0.41 0.33 16 32 H 0.11 0.64 8.05 -52.49 -0.42 0.22 16 33 H 0.08 0.59 7.82 -51.93 -0.41 0.18 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.34 2.88 8.73 -39.29 -0.34 2.53 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.37 4.05 9.05 45.56 0.41 4.47 16 41 H 0.06 0.80 7.64 -51.93 -0.40 0.40 16 42 H 0.05 0.78 7.65 -51.93 -0.40 0.38 16 43 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 44 H 0.13 3.37 6.17 -52.49 -0.32 3.04 16 45 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 46 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 47 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 LS Contribution 397.61 15.07 5.99 5.99 Total: -1.00 -29.90 397.61 -10.29 -40.19 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.82 Total: 10.55 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -3.54 Total: -28.52 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: -0.12 Total: -27.03 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.77 Total: -14.85 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.90 -10.29 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905424189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.376 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds