Wall clock time and date at job start Tue Mar 31 2020 13:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32878 * 1 3 3 C 1.47112 * 119.99765 * 2 1 4 4 C 1.32875 * 120.00081 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00191 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47266 * 124.99485 * 5 4 3 7 7 N 1.46905 * 109.47305 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99741 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46990 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.47543 * 305.00561 * 9 8 7 11 11 O 1.42898 * 109.47149 * 65.00019 * 9 8 7 12 12 C 1.52993 * 109.47473 * 185.00267 * 9 8 7 13 13 O 1.42899 * 109.47626 * 175.00251 * 12 9 8 14 14 C 1.35672 * 117.00494 * 180.02562 * 13 12 9 15 15 C 1.39311 * 119.81787 * 179.97438 * 14 13 12 16 16 C 1.36444 * 120.18284 * 180.27547 * 15 14 13 17 17 C 1.40831 * 119.80941 * 359.50037 * 16 15 14 18 18 C 1.41217 * 120.17754 * 180.22537 * 17 16 15 19 19 H 1.08003 * 120.00517 * 204.70445 * 18 17 16 20 20 C 1.39895 * 119.99935 * 24.71470 * 18 17 16 21 21 N 1.30879 * 120.00135 * 17.78648 * 20 18 17 22 22 Si 1.86799 * 119.99868 * 197.79097 * 20 18 17 23 23 H 1.48499 * 109.47287 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46896 * 119.99819 * 22 20 18 25 25 H 1.48501 * 109.46845 * 239.99449 * 22 20 18 26 26 C 1.40831 * 119.64514 * 0.50352 * 17 16 15 27 27 C 1.36435 * 119.81054 * 359.74684 * 26 17 16 28 28 H 1.07999 * 119.99895 * 180.02562 * 1 2 3 29 29 H 1.08000 * 119.99670 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00184 * 179.97438 * 2 1 3 31 31 H 1.08008 * 120.00609 * 359.97438 * 3 2 1 32 32 H 1.07999 * 119.99867 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.47461 * 4.99862 * 5 4 3 34 34 H 1.09002 * 109.47055 * 244.99561 * 5 4 3 35 35 H 1.09004 * 109.46951 * 60.00218 * 6 5 4 36 36 H 1.08999 * 109.47584 * 299.99748 * 6 5 4 37 37 H 1.00897 * 111.00147 * 303.95308 * 7 6 5 38 38 H 1.08998 * 109.47210 * 60.00824 * 8 7 6 39 39 H 1.08997 * 109.47619 * 300.00530 * 8 7 6 40 40 H 0.96702 * 113.99634 * 60.00268 * 11 9 8 41 41 H 1.08997 * 109.47362 * 55.00222 * 12 9 8 42 42 H 1.09001 * 109.47329 * 294.99817 * 12 9 8 43 43 H 1.07997 * 119.91292 * 0.02562 * 15 14 13 44 44 H 1.07996 * 120.09288 * 179.72467 * 16 15 14 45 45 H 0.97001 * 120.00430 * 180.02562 * 21 20 18 46 46 H 1.07999 * 120.09616 * 179.73126 * 26 17 16 47 47 H 1.07993 * 119.91274 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 3.3930 1.2741 -0.0005 5 6 4.1465 2.5792 -0.0011 6 6 5.1184 2.6075 1.1802 7 7 5.8533 3.8795 1.1793 8 6 6.7977 3.9426 2.3027 9 6 7.5421 5.2789 2.2687 10 1 8.0156 5.4064 1.2952 11 8 6.6173 6.3452 2.4919 12 6 8.6121 5.2946 3.3621 13 8 9.3838 6.4927 3.2564 14 6 10.3827 6.6637 4.1585 15 6 11.1721 7.8105 4.1088 16 6 12.1822 7.9874 5.0088 17 6 12.4189 7.0117 5.9964 18 6 13.4592 7.1892 6.9347 19 1 13.9064 6.3309 7.4142 20 6 13.9106 8.4769 7.2433 21 7 13.1713 9.5168 6.9520 22 14 15.5686 8.7119 8.0711 23 1 16.2035 7.3879 8.2926 24 1 16.4422 9.5413 7.2027 25 1 15.3778 9.3935 9.3766 26 6 11.6163 5.8553 6.0395 27 6 10.6136 5.6912 5.1290 28 1 -0.5400 -0.9353 0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8688 -0.9353 0.0004 31 1 1.5243 2.2095 -0.0004 32 1 3.9331 0.3389 -0.0005 33 1 3.4416 3.4058 0.0885 34 1 4.7040 2.6764 -0.9327 35 1 5.8233 1.7810 1.0906 36 1 4.5610 2.5103 2.1118 37 1 6.3269 4.0229 0.3000 38 1 7.5140 3.1251 2.2216 39 1 6.2515 3.8552 3.2419 40 1 6.1580 6.2960 3.3414 41 1 9.2653 4.4301 3.2438 42 1 8.1327 5.2565 4.3403 43 1 10.9866 8.5596 3.3533 44 1 12.7961 8.8749 4.9662 45 1 13.4844 10.4097 7.1657 46 1 11.7943 5.1003 6.7911 47 1 9.9974 4.8049 5.1603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905424189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:04 Heat of formation + Delta-G solvation = -63.885653 kcal Electronic energy + Delta-G solvation = -24226.092716 eV Core-core repulsion = 20566.402706 eV Total energy + Delta-G solvation = -3659.690010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.65546 -39.13899 -38.01330 -37.32594 -36.00810 -35.17905 -33.44374 -31.97026 -31.21074 -30.77836 -28.91640 -26.82707 -25.70472 -23.47973 -23.20242 -22.46612 -22.18202 -21.24246 -20.51912 -19.25682 -18.72481 -17.82877 -17.34804 -17.04103 -16.74362 -16.19116 -15.92708 -15.81507 -15.71482 -15.39117 -15.13915 -14.74790 -14.71246 -14.15096 -14.07251 -13.93009 -13.59065 -13.47384 -13.13082 -12.89621 -12.81730 -12.78195 -12.68783 -12.60498 -12.38860 -12.07698 -11.90841 -11.83228 -11.69418 -11.66663 -11.57878 -11.21299 -10.92426 -10.86895 -9.56502 -9.38478 -9.19635 -8.92548 -8.59645 -6.23060 0.48550 0.94473 1.02299 1.40134 1.51009 1.55369 2.20059 2.23010 2.40210 2.72589 3.23039 3.53798 3.70218 3.88870 3.92468 4.01343 4.07748 4.12279 4.22868 4.26218 4.28775 4.36310 4.39036 4.46641 4.50781 4.61583 4.65099 4.76307 4.86690 4.91059 5.03277 5.03667 5.07524 5.16592 5.21678 5.28354 5.45414 5.58414 5.64300 5.67256 5.80616 5.88170 5.97078 6.03837 6.05797 6.26203 6.39021 6.56661 6.80232 6.88060 6.95055 7.10181 8.37187 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.046086 B = 0.001507 C = 0.001481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.414792 B =18576.683380 C =18895.323965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.145 4.145 3 C -0.147 4.147 4 C -0.139 4.139 5 C -0.086 4.086 6 C 0.067 3.933 7 N -0.691 5.691 8 C 0.042 3.958 9 C 0.123 3.877 10 H 0.097 0.903 11 O -0.561 6.561 12 C 0.029 3.971 13 O -0.331 6.331 14 C -0.001 4.001 15 C -0.134 4.134 16 C -0.152 4.152 17 C 0.054 3.946 18 C -0.499 4.499 19 H 0.076 0.924 20 C 0.034 3.966 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.257 1.257 24 H -0.265 1.265 25 H -0.267 1.267 26 C -0.208 4.208 27 C -0.164 4.164 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.346 0.654 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.383 0.617 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.287 0.713 46 H 0.106 0.894 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.686 -15.790 -11.363 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.163 4.163 3 C -0.165 4.165 4 C -0.157 4.157 5 C -0.123 4.123 6 C -0.062 4.062 7 N -0.323 5.323 8 C -0.088 4.088 9 C 0.063 3.937 10 H 0.115 0.885 11 O -0.368 6.368 12 C -0.047 4.047 13 O -0.247 6.247 14 C -0.045 4.045 15 C -0.153 4.153 16 C -0.172 4.172 17 C 0.052 3.948 18 C -0.529 4.529 19 H 0.094 0.906 20 C -0.180 4.180 21 N -0.459 5.459 22 Si 0.803 3.197 23 H -0.181 1.181 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.228 4.228 27 C -0.183 4.183 28 H 0.131 0.869 29 H 0.119 0.881 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.232 0.768 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.124 0.876 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.055 -14.895 -11.738 26.185 hybrid contribution 1.235 -0.550 0.865 1.605 sum -16.820 -15.445 -10.873 25.292 Atomic orbital electron populations 1.24570 0.95606 1.02797 0.98791 1.22142 0.95932 0.96837 1.01372 1.22094 0.95042 0.97106 1.02288 1.23403 0.94936 0.98675 0.98727 1.20606 0.98158 0.95284 0.98281 1.21886 0.95761 0.89396 0.99119 1.60294 1.30746 1.34976 1.06260 1.22423 0.94693 0.95401 0.96275 1.21801 0.86910 0.87215 0.97726 0.88515 1.86598 1.58093 1.49096 1.42983 1.23511 0.93832 0.87048 1.00346 1.85879 1.44195 1.42080 1.52530 1.18707 0.93961 0.97075 0.94733 1.20007 0.97571 0.96590 1.01109 1.20892 0.99517 1.01220 0.95521 1.17962 0.92592 0.92040 0.92201 1.19745 1.17186 0.93714 1.22256 0.90554 1.26735 1.01434 0.94846 0.94970 1.69896 1.36931 1.00487 1.38587 0.85168 0.77056 0.79371 0.78152 1.18094 1.19016 1.19169 1.20811 0.99066 1.00702 1.02183 1.20695 1.00999 0.99185 0.97418 0.86913 0.88111 0.86366 0.86972 0.86359 0.91257 0.90276 0.94379 0.91273 0.83547 0.92811 0.89583 0.76828 0.91166 0.91818 0.87611 0.87304 0.90217 0.87567 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 14.43 66.64 0.96 -0.86 16 2 C -0.14 -1.70 9.83 23.42 0.23 -1.47 16 3 C -0.15 -1.89 9.44 23.42 0.22 -1.67 16 4 C -0.14 -1.64 9.22 24.51 0.23 -1.41 16 5 C -0.09 -1.04 5.92 29.84 0.18 -0.86 16 6 C 0.07 0.88 5.67 86.30 0.49 1.37 16 7 N -0.69 -11.05 6.45 -513.88 -3.31 -14.37 16 8 C 0.04 0.68 5.32 86.30 0.46 1.14 16 9 C 0.12 2.81 3.43 30.59 0.10 2.92 16 10 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 11 O -0.56 -14.81 13.25 -144.34 -1.91 -16.72 16 12 C 0.03 0.81 4.36 71.98 0.31 1.12 16 13 O -0.33 -13.13 10.09 -85.25 -0.86 -13.99 16 14 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 15 C -0.13 -6.67 9.92 22.11 0.22 -6.45 16 16 C -0.15 -8.25 8.64 22.49 0.19 -8.06 16 17 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 18 C -0.50 -27.16 9.04 23.40 0.21 -26.94 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.73 5.14 85.24 0.44 2.17 16 21 N -0.83 -44.31 10.96 21.82 0.24 -44.07 16 22 Si 0.98 38.52 29.59 68.60 2.03 40.55 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 26 C -0.21 -10.18 9.74 22.48 0.22 -9.96 16 27 C -0.16 -7.16 8.96 22.11 0.20 -6.96 16 28 H 0.11 0.81 8.06 -2.91 -0.02 0.79 16 29 H 0.10 0.94 8.05 -2.91 -0.02 0.91 16 30 H 0.12 1.15 8.06 -2.91 -0.02 1.12 16 31 H 0.11 1.41 7.87 -2.91 -0.02 1.39 16 32 H 0.12 1.18 8.05 -2.91 -0.02 1.16 16 33 H 0.07 0.97 7.82 -2.39 -0.02 0.95 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.35 5.15 8.73 -89.70 -0.78 4.37 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.38 7.72 9.05 -74.06 -0.67 7.05 16 41 H 0.07 1.78 7.64 -2.39 -0.02 1.77 16 42 H 0.06 1.66 7.65 -2.39 -0.02 1.65 16 43 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.11 6.14 6.17 -2.91 -0.02 6.12 16 45 H 0.29 13.79 8.30 -92.71 -0.77 13.03 16 46 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 47 H 0.13 4.57 6.27 -2.91 -0.02 4.55 16 Total: -1.00 -64.61 397.61 0.38 -64.23 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: -0.50 Total: 37.33 kcal Atomic # 6 Polarization: -57.66 SS G_CDS: 4.70 Total: -52.96 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -3.08 Total: -58.43 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -2.77 Total: -30.71 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -64.61 0.38 -64.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905424189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.341 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds