Wall clock time and date at job start Tue Mar 31 2020 12:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47310 * 2 1 4 4 C 1.38266 * 119.94640 * 89.99938 * 3 2 1 5 5 C 1.38145 * 120.05239 * 179.97438 * 4 3 2 6 6 C 1.38725 * 119.94620 * 359.97438 * 5 4 3 7 7 O 1.35899 * 120.05627 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00290 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47134 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00108 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99625 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99797 * 179.97438 * 11 9 8 13 13 H 1.08990 * 109.41075 * 35.00156 * 12 11 9 14 14 C 1.52956 * 109.41213 * 154.86290 * 12 11 9 15 15 C 1.53231 * 109.40590 * 183.70495 * 14 12 11 16 16 C 1.51271 * 108.53522 * 305.37292 * 15 14 12 17 17 C 1.37879 * 120.84962 * 231.32193 * 16 15 14 18 18 N 1.31516 * 119.99835 * 359.97438 * 17 16 15 19 19 Si 1.86793 * 120.00073 * 179.97438 * 17 16 15 20 20 H 1.48497 * 109.47133 * 90.00186 * 19 17 16 21 21 H 1.48498 * 109.47248 * 210.00222 * 19 17 16 22 22 H 1.48508 * 109.47347 * 330.00147 * 19 17 16 23 23 C 1.51274 * 118.30155 * 51.34492 * 16 15 14 24 24 C 1.52958 * 109.41213 * 275.14463 * 12 11 9 25 25 C 1.38731 * 119.88981 * 359.97438 * 6 5 4 26 26 C 1.38143 * 119.94414 * 0.02562 * 25 6 5 27 27 H 1.09003 * 109.47441 * 60.00440 * 1 2 3 28 28 H 1.09005 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47303 * 300.00149 * 1 2 3 30 30 H 1.08997 * 109.47207 * 239.99112 * 2 1 3 31 31 H 1.09006 * 109.47198 * 120.00020 * 2 1 3 32 32 H 1.07993 * 119.96871 * 0.25782 * 4 3 2 33 33 H 1.08000 * 120.02340 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46773 * 299.99747 * 8 7 6 35 35 H 1.08993 * 109.47213 * 59.99622 * 8 7 6 36 36 H 0.97002 * 120.00592 * 0.02562 * 11 9 8 37 37 H 1.09008 * 109.48284 * 303.68334 * 14 12 11 38 38 H 1.09001 * 109.48670 * 63.72548 * 14 12 11 39 39 H 1.09004 * 109.62495 * 65.08233 * 15 14 12 40 40 H 1.09000 * 109.63021 * 185.65377 * 15 14 12 41 41 H 0.96998 * 119.99811 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.62413 * 68.36801 * 23 16 15 43 43 H 1.08994 * 109.62434 * 188.74917 * 23 16 15 44 44 H 1.09002 * 109.48232 * 296.27375 * 24 12 11 45 45 H 1.08997 * 109.48507 * 56.31701 * 24 12 11 46 46 H 1.08001 * 120.02847 * 179.97438 * 25 6 5 47 47 H 1.08001 * 119.97044 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1981 5 6 2.7234 3.3738 1.2006 6 6 2.9560 4.0284 -0.0001 7 8 3.4101 5.3093 -0.0002 8 6 3.6268 5.9207 -1.2735 9 6 4.1254 7.3292 -1.0761 10 8 4.2794 7.7664 0.0446 11 7 4.4000 8.1027 -2.1450 12 6 4.8841 9.4721 -1.9531 13 1 5.5222 9.5103 -1.0703 14 6 5.6880 9.9038 -3.1807 15 6 6.2718 11.3003 -2.9417 16 6 5.1422 12.2373 -2.5752 17 6 4.9757 13.4362 -3.2355 18 7 5.8050 13.7778 -4.1974 19 14 3.5722 14.5751 -2.7640 20 1 4.0271 15.5079 -1.7020 21 1 3.1436 15.3518 -3.9549 22 1 2.4298 13.7708 -2.2603 23 6 4.2004 11.8257 -1.4653 24 6 3.6918 10.4104 -1.7596 25 6 2.7254 3.3729 -1.2009 26 6 2.2644 2.0707 -1.1981 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.0859 1.5598 2.1325 33 1 2.9026 3.8818 2.1367 34 1 4.3678 5.3473 -1.8304 35 1 2.6902 5.9420 -1.8305 36 1 4.2765 7.7532 -3.0414 37 1 6.4986 9.1954 -3.3520 38 1 5.0350 9.9272 -4.0531 39 1 6.9938 11.2606 -2.1260 40 1 6.7603 11.6533 -3.8499 41 1 5.6876 14.6211 -4.6622 42 1 4.7307 11.8347 -0.5130 43 1 3.3598 12.5183 -1.4228 44 1 3.0870 10.4216 -2.6664 45 1 3.0865 10.0614 -0.9230 46 1 2.9054 3.8805 -2.1370 47 1 2.0843 1.5601 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180517809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:24 Heat of formation + Delta-G solvation = -73.864451 kcal Electronic energy + Delta-G solvation = -25533.938289 eV Core-core repulsion = 21873.815566 eV Total energy + Delta-G solvation = -3660.122723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.56797 -39.46709 -37.94845 -36.65315 -33.86337 -33.78062 -31.75933 -31.32114 -29.76677 -29.53668 -28.36238 -26.71229 -23.92087 -23.22782 -22.21976 -21.54413 -21.08970 -20.14230 -19.53428 -18.51545 -17.23129 -16.44002 -16.14322 -15.95148 -15.76940 -15.40824 -14.70825 -14.49833 -14.28896 -14.26531 -13.84285 -13.69020 -13.45787 -13.20110 -12.93102 -12.76979 -12.61601 -12.38705 -12.21643 -12.10091 -11.67009 -11.49264 -11.32554 -11.10334 -11.04222 -11.02889 -10.84717 -10.74458 -10.21897 -10.03887 -9.68242 -9.53612 -9.26514 -9.04214 -8.89776 -8.51709 -8.36243 -8.29912 -6.12849 -4.03724 1.07767 1.16195 2.58120 2.74792 3.26707 3.34854 3.36185 3.48286 3.74343 4.36714 4.45069 4.48047 4.58214 4.69649 4.82178 4.86442 4.89467 5.00722 5.08512 5.14765 5.16349 5.25514 5.40236 5.53562 5.60070 5.67656 5.77639 5.83715 5.84212 6.03606 6.10175 6.14877 6.35851 6.40238 6.44316 6.50708 6.66825 6.70348 6.85634 6.92266 7.07683 7.14866 7.22226 7.41294 7.61897 7.67062 7.70682 7.84358 8.35158 8.42409 8.93336 9.52057 10.96524 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033764 B = 0.002038 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.077116 B =13732.296100 C =13876.466705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.078 4.078 5 C -0.146 4.146 6 C 0.128 3.872 7 O -0.288 6.288 8 C 0.040 3.960 9 C 0.510 3.490 10 O -0.520 6.520 11 N -0.720 5.720 12 C 0.155 3.845 13 H 0.080 0.920 14 C -0.114 4.114 15 C 0.012 3.988 16 C -0.488 4.488 17 C 0.076 3.924 18 N -0.890 5.890 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.264 1.264 23 C -0.020 4.020 24 C -0.113 4.113 25 C -0.209 4.209 26 C -0.077 4.077 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.007 0.993 40 H 0.061 0.939 41 H 0.264 0.736 42 H 0.019 0.981 43 H 0.036 0.964 44 H 0.051 0.949 45 H 0.037 0.963 46 H 0.129 0.871 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 -25.672 3.465 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.165 4.165 6 C 0.083 3.917 7 O -0.200 6.200 8 C -0.038 4.038 9 C 0.293 3.707 10 O -0.395 6.395 11 N -0.371 5.371 12 C 0.053 3.947 13 H 0.098 0.902 14 C -0.152 4.152 15 C -0.026 4.026 16 C -0.507 4.507 17 C -0.127 4.127 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.190 1.190 23 C -0.058 4.058 24 C -0.152 4.152 25 C -0.227 4.227 26 C -0.095 4.095 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.228 0.772 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.025 0.975 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.055 0.945 46 H 0.146 0.854 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.891 -25.063 4.316 26.628 hybrid contribution -0.859 0.469 -0.639 1.169 sum -8.750 -24.593 3.677 26.361 Atomic orbital electron populations 1.21768 0.94916 1.01558 1.02273 1.20461 0.96024 0.92539 1.02668 1.19800 1.02845 0.96847 0.93072 1.20832 0.97493 0.93458 0.97796 1.20464 1.04441 0.95059 0.96535 1.19105 0.94526 0.83736 0.94356 1.86186 1.80195 1.24050 1.29561 1.22562 1.02263 0.93358 0.85665 1.19919 0.78802 0.86161 0.85775 1.90747 1.51107 1.74026 1.23595 1.46296 1.67369 1.15491 1.07993 1.21118 0.96016 0.77422 1.00128 0.90216 1.21940 0.97634 0.99990 0.95635 1.19350 0.95332 0.89426 0.98450 1.20052 1.11414 1.02789 1.16464 1.24845 0.96186 0.97188 0.94465 1.69832 1.37080 1.22957 1.22938 0.86673 0.83257 0.80630 0.77885 1.20368 1.21668 1.18954 1.19798 0.96552 0.92275 0.97139 1.21897 0.96253 0.97551 0.99496 1.21270 1.07486 0.96951 0.97037 1.20797 0.97300 0.93734 0.97687 0.92596 0.92536 0.92543 0.91235 0.91178 0.85453 0.84960 0.89193 0.89185 0.77172 0.94531 0.92632 0.97483 0.92004 0.92587 0.96213 0.94564 0.92990 0.94470 0.85366 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.15 0.37 -0.47 16 2 C -0.08 -0.48 6.06 -27.89 -0.17 -0.65 16 3 C -0.13 -1.04 5.13 -104.60 -0.54 -1.58 16 4 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16 5 C -0.15 -1.59 9.99 -39.44 -0.39 -1.98 16 6 C 0.13 1.53 6.69 -39.22 -0.26 1.26 16 7 O -0.29 -4.07 9.67 -39.33 -0.38 -4.45 16 8 C 0.04 0.47 5.22 36.01 0.19 0.66 16 9 C 0.51 8.11 7.87 -10.99 -0.09 8.02 16 10 O -0.52 -10.83 16.16 -14.35 -0.23 -11.06 16 11 N -0.72 -10.82 5.07 -53.85 -0.27 -11.10 16 12 C 0.16 2.98 2.35 -67.97 -0.16 2.82 16 13 H 0.08 1.71 7.57 -51.93 -0.39 1.32 16 14 C -0.11 -2.24 5.40 -26.63 -0.14 -2.38 16 15 C 0.01 0.30 5.97 -27.48 -0.16 0.13 16 16 C -0.49 -12.68 5.51 -98.92 -0.55 -13.22 16 17 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 18 N -0.89 -25.16 12.73 55.43 0.71 -24.46 16 19 Si 0.89 20.99 27.53 -169.99 -4.68 16.31 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.26 -6.08 6.11 56.52 0.35 -5.73 16 23 C -0.02 -0.46 5.60 -27.48 -0.15 -0.62 16 24 C -0.11 -2.36 5.50 -26.63 -0.15 -2.51 16 25 C -0.21 -2.01 9.04 -39.43 -0.36 -2.37 16 26 C -0.08 -0.66 9.69 -39.61 -0.38 -1.04 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.09 0.79 7.66 -51.93 -0.40 0.39 16 35 H 0.09 0.81 7.66 -51.93 -0.40 0.42 16 36 H 0.40 4.51 8.60 -40.82 -0.35 4.16 16 37 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 40 H 0.06 1.62 7.07 -51.93 -0.37 1.26 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.04 0.85 4.59 -51.93 -0.24 0.62 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.13 0.98 6.30 -52.49 -0.33 0.65 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -31.74 377.95 -10.17 -41.92 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.58 Total: 0.19 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -3.43 Total: -13.04 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.43 Total: -35.56 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.61 Total: -15.51 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.68 Total: 16.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.74 -10.17 -41.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180517809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.947 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds