Wall clock time and date at job start Tue Mar 31 2020 12:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50700 * 109.47310 * 2 1 4 4 C 1.38266 * 119.94640 * 89.99938 * 3 2 1 5 5 C 1.38145 * 120.05239 * 179.97438 * 4 3 2 6 6 C 1.38725 * 119.94620 * 359.97438 * 5 4 3 7 7 O 1.35899 * 120.05627 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00290 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47134 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00108 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99625 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99797 * 179.97438 * 11 9 8 13 13 H 1.08990 * 109.41075 * 35.00156 * 12 11 9 14 14 C 1.52956 * 109.41213 * 154.86290 * 12 11 9 15 15 C 1.53231 * 109.40590 * 183.70495 * 14 12 11 16 16 C 1.51271 * 108.53522 * 305.37292 * 15 14 12 17 17 C 1.37879 * 120.84962 * 231.32193 * 16 15 14 18 18 N 1.31516 * 119.99835 * 359.97438 * 17 16 15 19 19 Si 1.86793 * 120.00073 * 179.97438 * 17 16 15 20 20 H 1.48497 * 109.47133 * 90.00186 * 19 17 16 21 21 H 1.48498 * 109.47248 * 210.00222 * 19 17 16 22 22 H 1.48508 * 109.47347 * 330.00147 * 19 17 16 23 23 C 1.51274 * 118.30155 * 51.34492 * 16 15 14 24 24 C 1.52958 * 109.41213 * 275.14463 * 12 11 9 25 25 C 1.38731 * 119.88981 * 359.97438 * 6 5 4 26 26 C 1.38143 * 119.94414 * 0.02562 * 25 6 5 27 27 H 1.09003 * 109.47441 * 60.00440 * 1 2 3 28 28 H 1.09005 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47303 * 300.00149 * 1 2 3 30 30 H 1.08997 * 109.47207 * 239.99112 * 2 1 3 31 31 H 1.09006 * 109.47198 * 120.00020 * 2 1 3 32 32 H 1.07993 * 119.96871 * 0.25782 * 4 3 2 33 33 H 1.08000 * 120.02340 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.46773 * 299.99747 * 8 7 6 35 35 H 1.08993 * 109.47213 * 59.99622 * 8 7 6 36 36 H 0.97002 * 120.00592 * 0.02562 * 11 9 8 37 37 H 1.09008 * 109.48284 * 303.68334 * 14 12 11 38 38 H 1.09001 * 109.48670 * 63.72548 * 14 12 11 39 39 H 1.09004 * 109.62495 * 65.08233 * 15 14 12 40 40 H 1.09000 * 109.63021 * 185.65377 * 15 14 12 41 41 H 0.96998 * 119.99811 * 179.97438 * 18 17 16 42 42 H 1.09002 * 109.62413 * 68.36801 * 23 16 15 43 43 H 1.08994 * 109.62434 * 188.74917 * 23 16 15 44 44 H 1.09002 * 109.48232 * 296.27375 * 24 12 11 45 45 H 1.08997 * 109.48507 * 56.31701 * 24 12 11 46 46 H 1.08001 * 120.02847 * 179.97438 * 25 6 5 47 47 H 1.08001 * 119.97044 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1981 5 6 2.7234 3.3738 1.2006 6 6 2.9560 4.0284 -0.0001 7 8 3.4101 5.3093 -0.0002 8 6 3.6268 5.9207 -1.2735 9 6 4.1254 7.3292 -1.0761 10 8 4.2794 7.7664 0.0446 11 7 4.4000 8.1027 -2.1450 12 6 4.8841 9.4721 -1.9531 13 1 5.5222 9.5103 -1.0703 14 6 5.6880 9.9038 -3.1807 15 6 6.2718 11.3003 -2.9417 16 6 5.1422 12.2373 -2.5752 17 6 4.9757 13.4362 -3.2355 18 7 5.8050 13.7778 -4.1974 19 14 3.5722 14.5751 -2.7640 20 1 4.0271 15.5079 -1.7020 21 1 3.1436 15.3518 -3.9549 22 1 2.4298 13.7708 -2.2603 23 6 4.2004 11.8257 -1.4653 24 6 3.6918 10.4104 -1.7596 25 6 2.7254 3.3729 -1.2009 26 6 2.2644 2.0707 -1.1981 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 2.0859 1.5598 2.1325 33 1 2.9026 3.8818 2.1367 34 1 4.3678 5.3473 -1.8304 35 1 2.6902 5.9420 -1.8305 36 1 4.2765 7.7532 -3.0414 37 1 6.4986 9.1954 -3.3520 38 1 5.0350 9.9272 -4.0531 39 1 6.9938 11.2606 -2.1260 40 1 6.7603 11.6533 -3.8499 41 1 5.6876 14.6211 -4.6622 42 1 4.7307 11.8347 -0.5130 43 1 3.3598 12.5183 -1.4228 44 1 3.0870 10.4216 -2.6664 45 1 3.0865 10.0614 -0.9230 46 1 2.9054 3.8805 -2.1370 47 1 2.0843 1.5601 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180517809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:23 Heat of formation + Delta-G solvation = -91.511101 kcal Electronic energy + Delta-G solvation = -25534.703505 eV Core-core repulsion = 21873.815566 eV Total energy + Delta-G solvation = -3660.887939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.48670 -40.62898 -38.90528 -38.18583 -35.43153 -34.43653 -33.52538 -32.03377 -31.51522 -30.57608 -29.38397 -28.12512 -24.56406 -24.26660 -23.60886 -23.30319 -21.83351 -21.42537 -21.19083 -19.34175 -18.54650 -17.74023 -17.37206 -17.16812 -16.58243 -16.42752 -16.39482 -15.56529 -15.34839 -15.25579 -14.95067 -14.65309 -14.55788 -14.30430 -14.18214 -14.09589 -13.97473 -13.66366 -13.48202 -13.31744 -12.87783 -12.80380 -12.67583 -12.58582 -12.03948 -11.96561 -11.86346 -11.83269 -11.80843 -11.61326 -11.41613 -11.10374 -10.81008 -10.66597 -10.54270 -9.95825 -9.94147 -9.03402 -8.17933 -6.12170 0.40015 0.45176 1.37925 1.41393 1.48845 1.52373 1.57849 2.40164 2.69417 2.79535 3.10057 3.58937 3.88604 3.92627 3.96221 4.03218 4.07780 4.09233 4.20530 4.30176 4.44697 4.47442 4.53967 4.59960 4.68650 4.70185 4.83055 4.84508 4.95497 5.04712 5.05975 5.10559 5.13782 5.19261 5.22157 5.23280 5.34522 5.41264 5.44661 5.53944 5.55951 5.65427 5.73280 5.75009 5.81229 5.85501 6.33982 6.37166 6.59403 6.93231 7.23122 7.45999 8.92312 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033764 B = 0.002038 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.077116 B =13732.296100 C =13876.466705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.126 4.126 4 C -0.082 4.082 5 C -0.168 4.168 6 C 0.102 3.898 7 O -0.323 6.323 8 C 0.047 3.953 9 C 0.508 3.492 10 O -0.576 6.576 11 N -0.704 5.704 12 C 0.167 3.833 13 H 0.053 0.947 14 C -0.099 4.099 15 C 0.006 3.994 16 C -0.498 4.498 17 C 0.026 3.974 18 N -0.927 5.927 19 Si 0.937 3.063 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.252 1.252 23 C -0.022 4.022 24 C -0.106 4.106 25 C -0.209 4.209 26 C -0.081 4.081 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.145 0.855 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.417 0.583 37 H 0.062 0.938 38 H 0.062 0.938 39 H -0.005 1.005 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.010 0.990 43 H 0.036 0.964 44 H 0.060 0.940 45 H 0.036 0.964 46 H 0.151 0.849 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -28.559 2.429 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.100 4.100 5 C -0.187 4.187 6 C 0.057 3.943 7 O -0.236 6.236 8 C -0.030 4.030 9 C 0.294 3.706 10 O -0.455 6.455 11 N -0.357 5.357 12 C 0.062 3.938 13 H 0.072 0.928 14 C -0.137 4.137 15 C -0.032 4.032 16 C -0.518 4.518 17 C -0.173 4.173 18 N -0.566 5.566 19 Si 0.763 3.237 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.177 1.177 23 C -0.061 4.061 24 C -0.145 4.145 25 C -0.227 4.227 26 C -0.099 4.099 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.255 0.745 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.014 0.986 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.168 0.832 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.543 -27.992 3.250 29.752 hybrid contribution -0.312 1.281 -0.267 1.345 sum -9.855 -26.711 2.983 28.627 Atomic orbital electron populations 1.21760 0.94596 1.02264 1.01805 1.20514 0.96180 0.91161 1.03698 1.20154 1.01708 0.97885 0.92828 1.21071 0.97001 0.92772 0.99118 1.20632 1.05576 0.96103 0.96362 1.19325 0.96187 0.83242 0.95546 1.86120 1.81098 1.25429 1.30997 1.22605 1.04543 0.90364 0.85522 1.20709 0.77431 0.87744 0.84721 1.90728 1.53458 1.75490 1.25840 1.45929 1.66708 1.13771 1.09322 1.20660 0.94935 0.79441 0.98716 0.92828 1.21693 0.98435 0.97653 0.95943 1.19323 0.94945 0.92175 0.96725 1.20575 1.11782 1.02940 1.16462 1.25545 0.98319 0.98640 0.94780 1.69947 1.38824 1.23500 1.24363 0.85866 0.81242 0.79043 0.77504 1.20511 1.21483 1.17651 1.19806 0.96094 0.94238 0.95919 1.21776 0.96853 0.96097 0.99778 1.21527 1.06840 0.97393 0.96976 1.21157 0.96481 0.93463 0.98802 0.92903 0.91281 0.93190 0.90045 0.90382 0.83718 0.85863 0.85786 0.86015 0.74527 0.91967 0.91921 0.98613 0.94549 0.92724 0.97117 0.94517 0.92121 0.94486 0.83178 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 71.98 0.71 -0.58 16 2 C -0.08 -0.72 6.06 29.85 0.18 -0.54 16 3 C -0.13 -1.79 5.13 -19.85 -0.10 -1.89 16 4 C -0.08 -1.34 9.69 22.25 0.22 -1.13 16 5 C -0.17 -3.62 9.99 22.36 0.22 -3.40 16 6 C 0.10 2.31 6.69 22.50 0.15 2.46 16 7 O -0.32 -8.88 9.67 -73.37 -0.71 -9.59 16 8 C 0.05 0.97 5.22 71.24 0.37 1.34 16 9 C 0.51 15.39 7.87 87.66 0.69 16.08 16 10 O -0.58 -24.17 16.16 16.02 0.26 -23.91 16 11 N -0.70 -19.54 5.07 -442.68 -2.25 -21.78 16 12 C 0.17 6.21 2.35 44.96 0.11 6.32 16 13 H 0.05 2.31 7.57 -2.39 -0.02 2.30 16 14 C -0.10 -3.77 5.40 30.66 0.17 -3.60 16 15 C 0.01 0.31 5.97 30.11 0.18 0.49 16 16 C -0.50 -26.06 5.51 -16.17 -0.09 -26.14 16 17 C 0.03 1.40 5.46 84.65 0.46 1.87 16 18 N -0.93 -53.35 12.73 21.45 0.27 -53.08 16 19 Si 0.94 43.10 27.53 68.60 1.89 44.99 16 20 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.25 -10.98 6.11 99.48 0.61 -10.37 16 23 C -0.02 -1.06 5.60 30.11 0.17 -0.89 16 24 C -0.11 -4.32 5.50 30.66 0.17 -4.15 16 25 C -0.21 -3.46 9.04 22.37 0.20 -3.26 16 26 C -0.08 -1.13 9.69 22.25 0.22 -0.92 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.58 8.08 -2.39 -0.02 0.57 16 31 H 0.08 0.61 8.08 -2.38 -0.02 0.59 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.12 1.69 7.66 -2.39 -0.02 1.67 16 35 H 0.12 1.72 7.66 -2.39 -0.02 1.70 16 36 H 0.42 7.98 8.60 -92.71 -0.80 7.18 16 37 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 39 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 40 H 0.04 1.95 7.07 -2.39 -0.02 1.93 16 41 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.04 1.70 4.59 -2.39 -0.01 1.69 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.15 1.68 6.30 -2.91 -0.02 1.66 16 47 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -71.35 377.95 3.56 -67.79 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.07 Total: 13.53 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.02 Total: -17.95 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -1.97 Total: -74.86 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.45 Total: -33.50 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.89 Total: 44.99 kcal Total: -71.35 3.56 -67.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180517809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.721 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds