Wall clock time and date at job start Tue Mar 31 2020 12:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47040 * 2 1 4 4 C 1.50709 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.38619 * 119.82930 * 269.97913 * 4 3 2 6 6 C 1.38054 * 120.45370 * 179.74166 * 5 4 3 7 7 C 1.38689 * 120.11080 * 0.55460 * 6 5 4 8 8 O 1.35593 * 120.17307 * 179.72173 * 7 6 5 9 9 C 1.42903 * 117.00062 * 5.31279 * 8 7 6 10 10 H 1.08994 * 110.88609 * 38.43078 * 9 8 7 11 11 C 1.55158 * 111.00536 * 162.35519 * 9 8 7 12 12 C 1.54340 * 103.01711 * 153.38179 * 11 9 8 13 13 N 1.47016 * 107.26757 * 338.13626 * 12 11 9 14 14 C 1.36936 * 125.64936 * 178.85038 * 13 12 11 15 15 H 1.07996 * 120.00450 * 179.69074 * 14 13 12 16 16 C 1.38818 * 119.99760 * 359.69593 * 14 13 12 17 17 N 1.31622 * 119.99813 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99924 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47304 * 270.00105 * 18 16 14 20 20 H 1.48501 * 109.46803 * 29.99991 * 18 16 14 21 21 H 1.48499 * 109.46833 * 149.99609 * 18 16 14 22 22 C 1.47426 * 108.70206 * 358.58914 * 13 12 11 23 23 C 1.40447 * 119.65884 * 359.44885 * 7 6 5 24 24 C 1.46786 * 120.22244 * 180.29585 * 23 7 6 25 25 C 1.50703 * 119.99950 * 179.97438 * 24 23 7 26 26 O 1.21293 * 120.00239 * 359.97438 * 24 23 7 27 27 C 1.37674 * 119.82937 * 89.99445 * 4 3 2 28 28 H 1.09008 * 109.47027 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47391 * 300.00177 * 1 2 3 30 30 H 1.08999 * 109.46749 * 60.00544 * 1 2 3 31 31 H 1.09001 * 109.47543 * 239.99465 * 2 1 3 32 32 H 1.09003 * 109.46954 * 119.99912 * 2 1 3 33 33 H 1.08999 * 109.47296 * 60.00146 * 3 2 1 34 34 H 1.08999 * 109.46905 * 299.99360 * 3 2 1 35 35 H 1.08003 * 119.77768 * 0.04029 * 5 4 3 36 36 H 1.08007 * 119.94900 * 180.30198 * 6 5 4 37 37 H 1.08997 * 110.71713 * 271.93279 * 11 9 8 38 38 H 1.08994 * 110.72203 * 35.03749 * 11 9 8 39 39 H 1.09007 * 109.98312 * 218.66031 * 12 11 9 40 40 H 1.08999 * 109.77838 * 97.49632 * 12 11 9 41 41 H 0.97002 * 119.99177 * 180.02562 * 17 16 14 42 42 H 1.09003 * 110.36260 * 143.19516 * 22 13 12 43 43 H 1.08998 * 110.36348 * 265.40527 * 22 13 12 44 44 H 1.09004 * 109.46728 * 60.00159 * 25 24 23 45 45 H 1.08995 * 109.47418 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47249 * 300.00424 * 25 24 23 47 47 H 1.07999 * 120.06398 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2360 1.4432 1.2035 6 6 5.6165 1.4379 1.2191 7 6 6.3258 1.4434 0.0273 8 8 7.6817 1.4439 0.0413 9 6 8.3174 1.3206 1.3151 10 1 7.7768 0.6217 1.9532 11 6 9.8017 0.8969 1.1572 12 6 10.4631 1.4668 2.4299 13 7 9.6007 2.5510 2.9219 14 6 9.8234 3.3000 4.0464 15 1 9.1296 4.0806 4.3215 16 6 10.9410 3.0560 4.8328 17 7 11.7863 2.1044 4.4978 18 14 11.2452 4.0783 6.3664 19 1 12.0602 5.2686 6.0143 20 1 9.9453 4.5186 6.9336 21 1 11.9717 3.2602 7.3705 22 6 8.4598 2.7025 2.0007 23 6 5.6325 1.4428 -1.1941 24 6 6.3708 1.4421 -2.4627 25 6 5.6218 1.4408 -3.7705 26 8 7.5837 1.4426 -2.4586 27 6 4.2323 1.4423 -1.1934 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6767 1.9562 -0.8900 35 1 3.6892 1.4430 2.1348 36 1 6.1450 1.4335 2.1610 37 1 9.8915 -0.1889 1.1264 38 1 10.2375 1.3442 0.2639 39 1 11.4522 1.8586 2.1922 40 1 10.5435 0.6852 3.1854 41 1 12.5671 1.9337 5.0476 42 1 7.5538 2.9457 2.5558 43 1 8.6695 3.4750 1.2609 44 1 4.9950 2.3305 -3.8310 45 1 6.3329 1.4409 -4.5965 46 1 4.9957 0.5506 -3.8297 47 1 3.6910 1.4424 -2.1279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234909757.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:29 Heat of formation + Delta-G solvation = -37.109702 kcal Electronic energy + Delta-G solvation = -26517.276590 eV Core-core repulsion = 22858.747673 eV Total energy + Delta-G solvation = -3658.528918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.55414 -38.71880 -38.14932 -36.35040 -34.77531 -32.34316 -32.04219 -30.56907 -29.48548 -29.15352 -27.42130 -26.18539 -24.49544 -23.94483 -22.35389 -21.46786 -20.29645 -20.03874 -19.44576 -18.00257 -17.05849 -16.24446 -16.06035 -15.35354 -15.07847 -14.96240 -14.69399 -14.59511 -14.50734 -14.08638 -13.88277 -13.67129 -13.60740 -12.93844 -12.82841 -12.42144 -12.37783 -12.29060 -12.15064 -12.07905 -11.91973 -11.70671 -11.38542 -11.26557 -11.07378 -10.97254 -10.90492 -10.80224 -10.31374 -10.21194 -10.07089 -9.87356 -9.71723 -9.50597 -9.07420 -8.64009 -8.01526 -6.89875 -5.75206 -3.10026 0.72058 1.37511 2.50058 3.36395 3.39148 3.44250 3.45819 3.72335 4.08922 4.47100 4.52204 4.63050 4.81396 4.84418 4.91666 5.04848 5.09940 5.17198 5.24691 5.26220 5.28149 5.35160 5.39677 5.47325 5.51009 5.54782 5.56775 5.62964 5.70064 5.74010 5.76274 5.88879 5.93169 6.02827 6.10595 6.23205 6.29906 6.35854 6.45140 6.47825 6.59008 6.62785 6.77828 7.50421 7.56284 7.64862 7.72763 7.78948 8.19940 9.16633 9.76248 10.41116 11.36521 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015047 B = 0.003135 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.335356 B = 8927.872623 C =10332.742678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.072 4.072 4 C -0.146 4.146 5 C -0.042 4.042 6 C -0.219 4.219 7 C 0.195 3.805 8 O -0.273 6.273 9 C 0.059 3.941 10 H 0.080 0.920 11 C -0.133 4.133 12 C 0.179 3.821 13 N -0.602 5.602 14 C -0.231 4.231 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.921 5.921 18 Si 0.915 3.085 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.290 1.290 22 C 0.119 3.881 23 C -0.215 4.215 24 C 0.387 3.613 25 C -0.196 4.196 26 O -0.437 6.437 27 C -0.036 4.036 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.254 0.746 42 H 0.043 0.957 43 H 0.030 0.970 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.260 -4.600 -12.774 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.109 4.109 4 C -0.146 4.146 5 C -0.060 4.060 6 C -0.238 4.238 7 C 0.146 3.854 8 O -0.183 6.183 9 C 0.002 3.998 10 H 0.098 0.902 11 C -0.171 4.171 12 C 0.054 3.946 13 N -0.330 5.330 14 C -0.359 4.359 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.745 3.255 19 H -0.215 1.215 20 H -0.206 1.206 21 H -0.216 1.216 22 C -0.007 4.007 23 C -0.217 4.217 24 C 0.264 3.736 25 C -0.253 4.253 26 O -0.312 6.312 27 C -0.054 4.054 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.107 0.893 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.279 -4.582 -12.757 24.392 hybrid contribution 0.054 0.531 1.136 1.255 sum -20.226 -4.051 -11.621 23.676 Atomic orbital electron populations 1.21793 0.95858 1.01622 1.01785 1.21549 0.95465 0.96384 1.02459 1.20524 0.90525 0.97117 1.02782 1.19642 0.95798 1.06350 0.92834 1.21050 0.93297 0.93925 0.97762 1.21500 0.95252 1.09035 0.97977 1.19374 0.83806 0.89309 0.92879 1.86307 1.14754 1.84606 1.32676 1.23972 0.94445 0.99259 0.82095 0.90198 1.23003 0.91850 1.00570 1.01676 1.21215 0.93169 0.90516 0.89657 1.44342 1.23043 1.39562 1.26025 1.19053 1.06580 1.11666 0.98585 0.90319 1.24828 0.97246 0.98895 0.99366 1.69952 1.14407 1.32981 1.39529 0.86080 0.77844 0.79243 0.82356 1.21508 1.20644 1.21597 1.21968 0.92259 0.93526 0.92990 1.19903 0.93799 1.15185 0.92790 1.22150 0.89051 0.72616 0.89764 1.22225 1.02499 1.04000 0.96624 1.90629 1.15870 1.34966 1.89688 1.21037 0.91546 0.94804 0.98028 0.92788 0.92718 0.92765 0.91889 0.91841 0.91120 0.91179 0.85584 0.84167 0.91369 0.90888 0.93220 0.93006 0.93605 0.93921 0.95212 0.89275 0.89961 0.89319 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 3 C -0.07 -0.53 5.33 -27.88 -0.15 -0.67 16 4 C -0.15 -1.46 5.13 -104.68 -0.54 -1.99 16 5 C -0.04 -0.48 9.68 -39.51 -0.38 -0.86 16 6 C -0.22 -3.12 8.71 -39.48 -0.34 -3.47 16 7 C 0.20 3.15 6.65 -38.58 -0.26 2.89 16 8 O -0.27 -5.19 8.03 -40.38 -0.32 -5.51 16 9 C 0.06 1.15 2.82 -24.58 -0.07 1.08 16 10 H 0.08 1.46 6.61 -51.93 -0.34 1.12 16 11 C -0.13 -2.71 6.68 -24.89 -0.17 -2.87 16 12 C 0.18 4.45 5.37 -3.06 -0.02 4.44 16 13 N -0.60 -15.75 3.39 -170.06 -0.58 -16.32 16 14 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 15 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 17 N -0.92 -27.16 10.31 55.49 0.57 -26.59 16 18 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.12 2.62 6.60 -2.53 -0.02 2.60 16 23 C -0.22 -2.94 5.88 -104.94 -0.62 -3.56 16 24 C 0.39 5.35 7.22 -30.85 -0.22 5.13 16 25 C -0.20 -1.67 8.93 36.01 0.32 -1.35 16 26 O -0.44 -8.02 15.90 -16.36 -0.26 -8.28 16 27 C -0.04 -0.37 9.10 -39.12 -0.36 -0.72 16 28 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 36 H 0.14 2.09 5.31 -52.48 -0.28 1.81 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.05 1.36 7.52 -51.92 -0.39 0.97 16 40 H 0.05 1.39 7.37 -51.93 -0.38 1.00 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.04 0.88 7.24 -51.93 -0.38 0.51 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 46 H 0.09 0.56 8.09 -51.93 -0.42 0.14 16 47 H 0.13 0.92 7.05 -52.49 -0.37 0.55 16 LS Contribution 379.10 15.07 5.71 5.71 Total: -1.00 -32.93 379.10 -10.34 -43.28 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.59 Total: -1.60 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.85 Total: -7.81 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.00 Total: -42.91 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.58 Total: -13.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.93 -10.34 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234909757.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.166 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds