Wall clock time and date at job start Tue Mar 31 2020 12:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47209 * 2 1 4 4 C 1.50698 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.38629 * 119.83400 * 270.02334 * 4 3 2 6 6 C 1.38053 * 120.45660 * 179.97438 * 5 4 3 7 7 C 1.38694 * 120.11061 * 359.97438 * 6 5 4 8 8 O 1.35595 * 120.17126 * 179.97438 * 7 6 5 9 9 C 1.42906 * 116.99820 * 354.46690 * 8 7 6 10 10 H 1.08994 * 110.64078 * 326.90671 * 9 8 7 11 11 C 1.55156 * 110.71879 * 203.76299 * 9 8 7 12 12 C 1.54909 * 101.58072 * 206.13571 * 11 9 8 13 13 N 1.47429 * 104.83323 * 37.01546 * 12 11 9 14 14 C 1.36933 * 125.65278 * 155.91032 * 13 12 11 15 15 H 1.07994 * 120.00036 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99779 * 359.96912 * 14 13 12 17 17 N 1.31618 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47182 * 60.00286 * 18 16 14 20 20 H 1.48503 * 109.46871 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47038 * 299.99677 * 18 16 14 22 22 C 1.47022 * 108.69686 * 335.86787 * 13 12 11 23 23 C 1.40445 * 119.66100 * 0.02562 * 7 6 5 24 24 C 1.46778 * 120.22364 * 180.02562 * 23 7 6 25 25 C 1.50699 * 120.00089 * 179.97438 * 24 23 7 26 26 O 1.21297 * 120.00425 * 359.97438 * 24 23 7 27 27 C 1.37675 * 119.82982 * 89.99984 * 4 3 2 28 28 H 1.08993 * 109.47162 * 60.00063 * 1 2 3 29 29 H 1.09007 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47334 * 299.99556 * 1 2 3 31 31 H 1.09001 * 109.47180 * 239.99942 * 2 1 3 32 32 H 1.09006 * 109.47307 * 120.00278 * 2 1 3 33 33 H 1.09002 * 109.47187 * 60.00438 * 3 2 1 34 34 H 1.08998 * 109.47463 * 300.00083 * 3 2 1 35 35 H 1.08000 * 119.77166 * 359.97438 * 5 4 3 36 36 H 1.07996 * 119.94520 * 179.97438 * 6 5 4 37 37 H 1.08998 * 111.00748 * 324.21113 * 11 9 8 38 38 H 1.08996 * 111.00456 * 88.06703 * 11 9 8 39 39 H 1.09000 * 110.36758 * 155.85173 * 12 11 9 40 40 H 1.08997 * 110.37183 * 278.06245 * 12 11 9 41 41 H 0.96998 * 120.00067 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.88280 * 241.63988 * 22 13 12 43 43 H 1.08999 * 109.88195 * 120.48428 * 22 13 12 44 44 H 1.09000 * 109.47429 * 359.97438 * 25 24 23 45 45 H 1.09000 * 109.47397 * 120.00468 * 25 24 23 46 46 H 1.09002 * 109.47224 * 239.99976 * 25 24 23 47 47 H 1.08002 * 120.05894 * 359.74935 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5469 1.4424 0.0006 5 6 4.2361 1.4421 1.2035 6 6 5.6165 1.4416 1.2191 7 6 6.3258 1.4408 0.0272 8 8 7.6817 1.4408 0.0411 9 6 8.3174 1.5644 1.3150 10 1 7.7236 2.1896 1.9817 11 6 9.7517 2.1354 1.1596 12 6 10.4515 1.5654 2.4186 13 7 9.8831 0.2156 2.5877 14 6 10.4836 -0.8271 3.2415 15 1 9.9823 -1.7811 3.3114 16 6 11.7366 -0.6578 3.8143 17 7 12.3474 0.5050 3.7295 18 14 12.5560 -2.0803 4.7056 19 1 12.7423 -3.2132 3.7637 20 1 13.8782 -1.6447 5.2227 21 1 11.6994 -2.5140 5.8384 22 6 8.5644 0.1748 1.9390 23 6 5.6325 1.4411 -1.1942 24 6 6.3707 1.4398 -2.4628 25 6 5.6217 1.4395 -3.7705 26 8 7.5837 1.4388 -2.4588 27 6 4.2323 1.4423 -1.1934 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.6893 1.4423 2.1348 36 1 6.1450 1.4418 2.1609 37 1 10.2232 1.7651 0.2492 38 1 9.7425 3.2252 1.1775 39 1 11.5283 1.5064 2.2602 40 1 10.2301 2.1837 3.2884 41 1 13.2231 0.6232 4.1294 42 1 7.7938 -0.0416 2.6789 43 1 8.5579 -0.5878 1.1602 44 1 4.5493 1.4400 -3.5750 45 1 5.8877 2.3289 -4.3418 46 1 5.8862 0.5490 -4.3406 47 1 3.6909 1.4380 -2.1279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234909759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:36 Heat of formation + Delta-G solvation = -32.223207 kcal Electronic energy + Delta-G solvation = -26512.266106 eV Core-core repulsion = 22853.949082 eV Total energy + Delta-G solvation = -3658.317023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.57492 -38.72278 -38.15651 -36.33573 -34.77686 -32.34841 -32.09952 -30.56766 -29.48164 -29.13502 -27.39922 -26.18975 -24.51393 -23.98021 -22.35212 -21.46814 -20.31174 -20.01393 -19.44766 -18.04050 -17.05139 -16.25604 -16.08021 -15.39248 -15.07828 -14.96803 -14.73538 -14.59815 -14.53692 -14.15788 -13.81730 -13.71693 -13.61669 -12.97695 -12.86350 -12.46722 -12.30358 -12.16305 -12.15051 -11.92445 -11.84479 -11.68030 -11.43136 -11.22511 -11.12593 -10.99038 -10.90916 -10.77856 -10.42585 -10.22186 -10.05866 -9.83161 -9.60972 -9.48215 -9.09555 -8.67750 -8.02539 -6.88674 -5.68006 -3.10475 0.70896 1.35672 2.50335 3.37841 3.40743 3.44685 3.46733 3.70772 4.08508 4.47412 4.49915 4.61365 4.78623 4.83298 4.86497 4.99473 5.12865 5.18371 5.21813 5.28182 5.32250 5.32903 5.37766 5.47856 5.48828 5.53910 5.56198 5.60884 5.72132 5.75205 5.77091 5.88378 5.91807 6.03162 6.09497 6.26780 6.29923 6.42245 6.45423 6.50127 6.58145 6.61992 6.77840 7.43853 7.58713 7.66016 7.74367 7.81917 8.31684 9.18252 9.78514 10.41977 11.36326 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003064 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.105975 B = 9137.587215 C =10223.274590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.072 4.072 4 C -0.146 4.146 5 C -0.042 4.042 6 C -0.221 4.221 7 C 0.195 3.805 8 O -0.271 6.271 9 C 0.062 3.938 10 H 0.078 0.922 11 C -0.134 4.134 12 C 0.153 3.847 13 N -0.600 5.600 14 C -0.224 4.224 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.923 5.923 18 Si 0.917 3.083 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.121 3.879 23 C -0.214 4.214 24 C 0.387 3.613 25 C -0.198 4.198 26 O -0.437 6.437 27 C -0.037 4.037 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.016 0.984 41 H 0.254 0.746 42 H 0.025 0.975 43 H 0.036 0.964 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.689 4.307 -10.442 25.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.109 4.109 4 C -0.147 4.147 5 C -0.060 4.060 6 C -0.239 4.239 7 C 0.146 3.854 8 O -0.181 6.181 9 C 0.006 3.994 10 H 0.096 0.904 11 C -0.173 4.173 12 C 0.028 3.972 13 N -0.327 5.327 14 C -0.352 4.352 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.212 1.212 22 C -0.005 4.005 23 C -0.216 4.216 24 C 0.264 3.736 25 C -0.255 4.255 26 O -0.311 6.311 27 C -0.055 4.055 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.132 0.868 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.673 4.242 -10.482 24.446 hybrid contribution 0.148 -0.728 0.848 1.127 sum -21.525 3.514 -9.634 23.843 Atomic orbital electron populations 1.21791 0.95849 1.01660 1.01733 1.21556 0.95465 0.96350 1.02569 1.20519 0.90488 0.97166 1.02722 1.19646 0.95818 1.06386 0.92820 1.21038 0.93253 0.93976 0.97755 1.21440 0.95232 1.09378 0.97875 1.19406 0.83935 0.89180 0.92894 1.86373 1.14619 1.84495 1.32642 1.23826 0.94740 0.98443 0.82413 0.90433 1.23199 0.92197 0.99319 1.02569 1.21995 1.01037 0.83904 0.90215 1.44356 1.14607 1.09785 1.63980 1.19033 0.99130 0.90412 1.26673 0.90430 1.24801 0.97313 0.97346 1.01074 1.69750 1.15720 1.22061 1.49626 0.86109 0.78589 0.81169 0.79373 1.21071 1.21482 1.21161 1.21671 0.89783 0.93808 0.95286 1.19928 0.93801 1.14960 0.92866 1.22134 0.89070 0.72636 0.89763 1.22216 1.01824 1.04651 0.96815 1.90643 1.15801 1.35036 1.89617 1.21132 0.91617 0.94716 0.98056 0.92778 0.92754 0.92750 0.91834 0.91785 0.91163 0.91186 0.85598 0.84348 0.90514 0.91563 0.86847 0.96573 0.93527 0.95681 0.94656 0.90245 0.89148 0.89116 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.85 5.92 -26.74 -0.16 -1.01 16 3 C -0.07 -0.51 5.33 -27.89 -0.15 -0.66 16 4 C -0.15 -1.45 5.13 -104.68 -0.54 -1.98 16 5 C -0.04 -0.47 9.68 -39.51 -0.38 -0.85 16 6 C -0.22 -3.09 8.89 -39.48 -0.35 -3.44 16 7 C 0.19 3.15 6.69 -38.58 -0.26 2.90 16 8 O -0.27 -5.24 7.94 -40.39 -0.32 -5.56 16 9 C 0.06 1.21 2.74 -24.90 -0.07 1.14 16 10 H 0.08 1.36 6.26 -51.93 -0.33 1.03 16 11 C -0.13 -2.78 6.81 -24.58 -0.17 -2.95 16 12 C 0.15 3.82 5.89 -2.53 -0.01 3.80 16 13 N -0.60 -15.93 3.39 -170.07 -0.58 -16.51 16 14 C -0.22 -6.40 10.27 -15.06 -0.15 -6.56 16 15 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 17 N -0.92 -27.14 10.09 55.49 0.56 -26.58 16 18 Si 0.92 22.32 29.55 -169.99 -5.02 17.30 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.12 2.70 6.80 -3.06 -0.02 2.68 16 23 C -0.21 -2.96 5.88 -104.95 -0.62 -3.58 16 24 C 0.39 5.47 7.21 -30.86 -0.22 5.25 16 25 C -0.20 -1.74 10.19 36.01 0.37 -1.38 16 26 O -0.44 -8.21 15.91 -16.36 -0.26 -8.47 16 27 C -0.04 -0.38 9.08 -39.12 -0.36 -0.74 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 34 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.14 1.96 5.62 -52.49 -0.29 1.67 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.11 3.15 5.88 -51.93 -0.31 2.85 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.03 0.54 7.80 -51.93 -0.40 0.13 16 43 H 0.04 0.83 8.06 -51.93 -0.42 0.41 16 44 H 0.08 0.49 5.60 -51.93 -0.29 0.20 16 45 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.14 0.95 5.93 -52.49 -0.31 0.64 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -33.14 377.03 -10.14 -43.29 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.39 Total: -0.86 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -2.82 Total: -8.28 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.02 Total: -43.09 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.58 Total: -14.03 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.14 -10.14 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234909759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.063 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds