Wall clock time and date at job start Tue Mar 31 2020 12:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47209 * 2 1 4 4 C 1.50698 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.38629 * 119.83400 * 270.02334 * 4 3 2 6 6 C 1.38053 * 120.45660 * 179.97438 * 5 4 3 7 7 C 1.38694 * 120.11061 * 359.97438 * 6 5 4 8 8 O 1.35595 * 120.17126 * 179.97438 * 7 6 5 9 9 C 1.42906 * 116.99820 * 354.46690 * 8 7 6 10 10 H 1.08994 * 110.64078 * 326.90671 * 9 8 7 11 11 C 1.55156 * 110.71879 * 203.76299 * 9 8 7 12 12 C 1.54909 * 101.58072 * 206.13571 * 11 9 8 13 13 N 1.47429 * 104.83323 * 37.01546 * 12 11 9 14 14 C 1.36933 * 125.65278 * 155.91032 * 13 12 11 15 15 H 1.07994 * 120.00036 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99779 * 359.96912 * 14 13 12 17 17 N 1.31618 * 120.00192 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99844 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47182 * 60.00286 * 18 16 14 20 20 H 1.48503 * 109.46871 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47038 * 299.99677 * 18 16 14 22 22 C 1.47022 * 108.69686 * 335.86787 * 13 12 11 23 23 C 1.40445 * 119.66100 * 0.02562 * 7 6 5 24 24 C 1.46778 * 120.22364 * 180.02562 * 23 7 6 25 25 C 1.50699 * 120.00089 * 179.97438 * 24 23 7 26 26 O 1.21297 * 120.00425 * 359.97438 * 24 23 7 27 27 C 1.37675 * 119.82982 * 89.99984 * 4 3 2 28 28 H 1.08993 * 109.47162 * 60.00063 * 1 2 3 29 29 H 1.09007 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47334 * 299.99556 * 1 2 3 31 31 H 1.09001 * 109.47180 * 239.99942 * 2 1 3 32 32 H 1.09006 * 109.47307 * 120.00278 * 2 1 3 33 33 H 1.09002 * 109.47187 * 60.00438 * 3 2 1 34 34 H 1.08998 * 109.47463 * 300.00083 * 3 2 1 35 35 H 1.08000 * 119.77166 * 359.97438 * 5 4 3 36 36 H 1.07996 * 119.94520 * 179.97438 * 6 5 4 37 37 H 1.08998 * 111.00748 * 324.21113 * 11 9 8 38 38 H 1.08996 * 111.00456 * 88.06703 * 11 9 8 39 39 H 1.09000 * 110.36758 * 155.85173 * 12 11 9 40 40 H 1.08997 * 110.37183 * 278.06245 * 12 11 9 41 41 H 0.96998 * 120.00067 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.88280 * 241.63988 * 22 13 12 43 43 H 1.08999 * 109.88195 * 120.48428 * 22 13 12 44 44 H 1.09000 * 109.47429 * 359.97438 * 25 24 23 45 45 H 1.09000 * 109.47397 * 120.00468 * 25 24 23 46 46 H 1.09002 * 109.47224 * 239.99976 * 25 24 23 47 47 H 1.08002 * 120.05894 * 359.74935 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5469 1.4424 0.0006 5 6 4.2361 1.4421 1.2035 6 6 5.6165 1.4416 1.2191 7 6 6.3258 1.4408 0.0272 8 8 7.6817 1.4408 0.0411 9 6 8.3174 1.5644 1.3150 10 1 7.7236 2.1896 1.9817 11 6 9.7517 2.1354 1.1596 12 6 10.4515 1.5654 2.4186 13 7 9.8831 0.2156 2.5877 14 6 10.4836 -0.8271 3.2415 15 1 9.9823 -1.7811 3.3114 16 6 11.7366 -0.6578 3.8143 17 7 12.3474 0.5050 3.7295 18 14 12.5560 -2.0803 4.7056 19 1 12.7423 -3.2132 3.7637 20 1 13.8782 -1.6447 5.2227 21 1 11.6994 -2.5140 5.8384 22 6 8.5644 0.1748 1.9390 23 6 5.6325 1.4411 -1.1942 24 6 6.3707 1.4398 -2.4628 25 6 5.6217 1.4395 -3.7705 26 8 7.5837 1.4388 -2.4588 27 6 4.2323 1.4423 -1.1934 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.6893 1.4423 2.1348 36 1 6.1450 1.4418 2.1609 37 1 10.2232 1.7651 0.2492 38 1 9.7425 3.2252 1.1775 39 1 11.5283 1.5064 2.2602 40 1 10.2301 2.1837 3.2884 41 1 13.2231 0.6232 4.1294 42 1 7.7938 -0.0416 2.6789 43 1 8.5579 -0.5878 1.1602 44 1 4.5493 1.4400 -3.5750 45 1 5.8877 2.3289 -4.3418 46 1 5.8862 0.5490 -4.3406 47 1 3.6909 1.4380 -2.1279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234909759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:35 Heat of formation + Delta-G solvation = -49.492152 kcal Electronic energy + Delta-G solvation = -26513.014943 eV Core-core repulsion = 22853.949082 eV Total energy + Delta-G solvation = -3659.065861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.71542 -40.06259 -39.23292 -37.97097 -35.52809 -34.32448 -33.09548 -31.61822 -31.03444 -30.23662 -29.10009 -27.08645 -26.36972 -24.96912 -23.34888 -22.33840 -22.21273 -21.35182 -20.47115 -19.29028 -19.05367 -17.38168 -17.15201 -16.83068 -16.70501 -16.07714 -15.85756 -15.70764 -15.51742 -15.41137 -15.18632 -14.96224 -14.44204 -14.31720 -14.20244 -13.77012 -13.66444 -13.39907 -13.10599 -12.98293 -12.86984 -12.82367 -12.73767 -12.66924 -12.46350 -12.22007 -12.10691 -12.02763 -11.89043 -11.81083 -11.51124 -11.46403 -11.41905 -10.81427 -10.56513 -10.06116 -9.10575 -8.99964 -7.84611 -5.31086 -0.28298 0.37904 1.43718 1.47990 1.50068 1.54413 2.07826 2.46002 2.74168 3.16456 3.25912 3.51907 3.57461 3.72188 3.82098 3.86406 3.93839 4.03152 4.15625 4.24872 4.33114 4.38631 4.42750 4.49404 4.56934 4.59600 4.64958 4.67955 4.77465 4.82127 4.86200 4.90435 5.00732 5.03290 5.10757 5.11997 5.18222 5.32581 5.34630 5.35676 5.37615 5.48752 5.56383 5.64958 5.67865 5.80375 6.20182 6.39908 6.71983 7.01504 7.66171 8.29931 9.17870 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003064 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.105975 B = 9137.587215 C =10223.274590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.040 4.040 6 C -0.233 4.233 7 C 0.151 3.849 8 O -0.295 6.295 9 C 0.081 3.919 10 H 0.099 0.901 11 C -0.124 4.124 12 C 0.159 3.841 13 N -0.622 5.622 14 C -0.249 4.249 15 H 0.080 0.920 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.987 3.013 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.274 1.274 22 C 0.123 3.877 23 C -0.230 4.230 24 C 0.381 3.619 25 C -0.189 4.189 26 O -0.499 6.499 27 C -0.023 4.023 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.005 0.995 41 H 0.251 0.749 42 H 0.037 0.963 43 H 0.017 0.983 44 H 0.113 0.887 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.444 4.377 -11.308 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.105 4.105 4 C -0.135 4.135 5 C -0.058 4.058 6 C -0.252 4.252 7 C 0.104 3.896 8 O -0.207 6.207 9 C 0.024 3.976 10 H 0.116 0.884 11 C -0.162 4.162 12 C 0.034 3.966 13 N -0.350 5.350 14 C -0.377 4.377 15 H 0.098 0.902 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.814 3.186 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.200 1.200 22 C -0.003 4.003 23 C -0.232 4.232 24 C 0.262 3.738 25 C -0.245 4.245 26 O -0.378 6.378 27 C -0.041 4.041 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.168 0.832 36 H 0.147 0.853 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.023 0.977 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.035 0.965 44 H 0.132 0.868 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -25.494 4.313 -11.364 28.244 hybrid contribution 1.116 -0.759 1.077 1.726 sum -24.378 3.554 -10.288 26.698 Atomic orbital electron populations 1.21772 0.94849 1.01859 1.02379 1.21543 0.96322 0.96033 1.02051 1.20592 0.87932 0.97588 1.04400 1.20067 0.97546 1.03789 0.92075 1.21378 0.92128 0.92629 0.99640 1.21449 0.96533 1.10473 0.96751 1.19862 0.82737 0.92121 0.94853 1.86327 1.16899 1.85841 1.31605 1.23475 0.94366 0.96476 0.83277 0.88352 1.22997 0.92796 1.00865 0.99541 1.21747 0.99628 0.83665 0.91587 1.44648 1.16284 1.09929 1.64093 1.19408 0.99849 0.91243 1.27202 0.90244 1.25705 0.97809 1.00050 1.02013 1.69996 1.15717 1.23827 1.50163 0.85041 0.77319 0.77994 0.78277 1.20457 1.21454 1.20008 1.21730 0.88315 0.95458 0.94800 1.20288 0.95385 1.15381 0.92138 1.23034 0.88554 0.70256 0.91910 1.22239 1.02989 1.05590 0.93716 1.90625 1.18435 1.38181 1.90533 1.21562 0.89964 0.92504 1.00063 0.91779 0.92868 0.92473 0.91869 0.92933 0.90140 0.89002 0.83207 0.85302 0.92194 0.88647 0.90051 0.97662 0.93915 0.94565 0.96544 0.86840 0.87893 0.88240 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.26 5.92 30.59 0.18 -1.08 16 3 C -0.07 -0.66 5.33 29.85 0.16 -0.50 16 4 C -0.13 -2.17 5.13 -19.90 -0.10 -2.27 16 5 C -0.04 -0.80 9.68 22.32 0.22 -0.58 16 6 C -0.23 -6.44 8.89 22.33 0.20 -6.24 16 7 C 0.15 4.95 6.69 22.92 0.15 5.11 16 8 O -0.30 -11.89 7.94 -68.10 -0.54 -12.43 16 9 C 0.08 3.24 2.74 31.78 0.09 3.33 16 10 H 0.10 3.49 6.26 -2.39 -0.01 3.48 16 11 C -0.12 -5.33 6.81 31.99 0.22 -5.12 16 12 C 0.16 8.29 5.89 86.85 0.51 8.80 16 13 N -0.62 -34.44 3.39 -691.99 -2.35 -36.79 16 14 C -0.25 -14.65 10.27 84.03 0.86 -13.78 16 15 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 16 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 17 N -0.95 -57.67 10.09 21.65 0.22 -57.45 16 18 Si 0.99 46.68 29.55 68.60 2.03 48.71 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 22 C 0.12 5.72 6.80 86.73 0.59 6.31 16 23 C -0.23 -6.13 5.88 -20.07 -0.12 -6.25 16 24 C 0.38 10.57 7.21 27.92 0.20 10.77 16 25 C -0.19 -2.78 10.19 71.24 0.73 -2.05 16 26 O -0.50 -19.53 15.91 17.86 0.28 -19.25 16 27 C -0.02 -0.40 9.08 22.57 0.20 -0.19 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 34 H 0.09 0.57 8.08 -2.39 -0.02 0.55 16 35 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.13 3.69 5.62 -2.91 -0.02 3.67 16 37 H 0.06 2.76 8.14 -2.39 -0.02 2.75 16 38 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.08 4.79 5.88 -2.39 -0.01 4.78 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.04 1.60 7.80 -2.39 -0.02 1.58 16 43 H 0.02 0.82 8.06 -2.39 -0.02 0.80 16 44 H 0.11 0.82 5.60 -2.39 -0.01 0.81 16 45 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 47 H 0.18 1.47 5.93 -2.91 -0.02 1.45 16 Total: -1.00 -77.14 377.03 5.87 -71.27 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.96 Total: 13.40 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.27 Total: -7.46 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -2.13 Total: -94.24 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.26 Total: -31.68 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -77.14 5.87 -71.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234909759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.780 kcal (2) G-P(sol) polarization free energy of solvation -77.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds