Wall clock time and date at job start Tue Mar 31 2020 12:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 C 1.53003 * 109.46510 * 175.08618 * 3 2 1 5 5 C 1.50704 * 112.85260 * 293.80502 * 4 3 2 6 6 O 1.21280 * 120.00006 * 125.60738 * 5 4 3 7 7 N 1.34779 * 119.99837 * 305.61504 * 5 4 3 8 8 C 1.46496 * 119.99572 * 174.83961 * 7 5 4 9 9 C 1.50706 * 109.46769 * 179.97438 * 8 7 5 10 10 C 1.38328 * 119.96383 * 269.72133 * 9 8 7 11 11 C 1.38279 * 120.13230 * 179.76819 * 10 9 8 12 12 C 1.38119 * 120.07308 * 0.50900 * 11 10 9 13 13 C 1.38857 * 119.93069 * 359.75009 * 12 11 10 14 14 O 1.35741 * 120.06930 * 179.97438 * 13 12 11 15 15 C 1.34832 * 117.00506 * 7.06681 * 14 13 12 16 16 H 1.08000 * 119.99733 * 6.18442 * 15 14 13 17 17 C 1.38652 * 120.00311 * 186.18894 * 15 14 13 18 18 N 1.31558 * 119.99718 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00237 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47006 * 89.99952 * 19 17 15 21 21 H 1.48498 * 109.47392 * 210.00146 * 19 17 15 22 22 H 1.48500 * 109.46946 * 330.00360 * 19 17 15 23 23 C 1.38074 * 119.96734 * 90.00101 * 9 8 7 24 24 C 1.53786 * 113.61096 * 162.50408 * 4 3 2 25 25 C 1.53788 * 87.07976 * 220.01842 * 24 4 3 26 26 C 1.53779 * 113.61564 * 65.00664 * 4 3 2 27 27 H 1.09004 * 109.46838 * 300.00110 * 1 2 3 28 28 H 1.09003 * 109.46978 * 59.99857 * 1 2 3 29 29 H 1.08991 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47181 * 239.99598 * 2 1 3 31 31 H 1.09001 * 109.46557 * 119.99816 * 2 1 3 32 32 H 1.08994 * 109.47256 * 295.08347 * 3 2 1 33 33 H 1.08994 * 109.47034 * 55.09007 * 3 2 1 34 34 H 0.96998 * 119.99839 * 354.83235 * 7 5 4 35 35 H 1.08997 * 109.47438 * 299.99384 * 8 7 5 36 36 H 1.09001 * 109.47524 * 60.00208 * 8 7 5 37 37 H 1.07998 * 119.92824 * 359.97438 * 10 9 8 38 38 H 1.08008 * 119.95962 * 180.25876 * 11 10 9 39 39 H 1.07998 * 120.03474 * 179.77008 * 12 11 10 40 40 H 0.97000 * 119.99527 * 180.02562 * 18 17 15 41 41 H 1.08009 * 120.03242 * 359.95236 * 23 9 8 42 42 H 1.09000 * 113.60934 * 334.56184 * 24 4 3 43 43 H 1.08997 * 113.61745 * 105.46959 * 24 4 3 44 44 H 1.08992 * 113.61026 * 270.88239 * 25 24 4 45 45 H 1.08997 * 113.61563 * 139.98036 * 25 24 4 46 46 H 1.09004 * 113.61236 * 254.52293 * 26 4 3 47 47 H 1.08995 * 113.61224 * 25.42693 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5651 1.4442 0.1236 5 6 4.0451 0.9207 1.4528 6 8 4.8445 0.0095 1.4928 7 7 3.5860 1.4652 2.5970 8 6 3.9640 0.8844 3.8877 9 6 3.3235 1.6736 5.0005 10 6 3.9909 2.7499 5.5569 11 6 3.4045 3.4794 6.5748 12 6 2.1544 3.1287 7.0462 13 6 1.4843 2.0455 6.4934 14 8 0.2559 1.6981 6.9548 15 6 -0.3206 2.5289 7.8467 16 1 0.1476 3.4720 8.0870 17 6 -1.5143 2.1725 8.4553 18 7 -2.0764 2.9831 9.3258 19 14 -2.3244 0.5416 8.0392 20 1 -1.8270 -0.5083 8.9640 21 1 -3.7970 0.6697 8.1818 22 1 -1.9933 0.1670 6.6409 23 6 2.0737 1.3180 5.4674 24 6 4.2149 2.7761 -0.2871 25 6 5.3197 1.9406 -0.9552 26 6 4.2815 0.8133 -1.0821 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7504 1.9303 -0.9307 33 1 1.6067 1.9811 0.8427 34 1 3.0054 2.2416 2.5658 35 1 3.6247 -0.1504 3.9339 36 1 5.0480 0.9166 3.9972 37 1 4.9704 3.0230 5.1933 38 1 3.9263 4.3218 7.0045 39 1 1.6986 3.6966 7.8438 40 1 -2.9114 2.7335 9.7518 41 1 1.5547 0.4752 5.0350 42 1 3.6177 3.3540 -0.9925 43 1 4.5662 3.3692 0.5572 44 1 6.1476 1.6988 -0.2887 45 1 5.6498 2.3401 -1.9141 46 1 4.6866 -0.1782 -0.8794 47 1 3.7025 0.8546 -2.0046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319099054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:27 Heat of formation + Delta-G solvation = -39.582247 kcal Electronic energy + Delta-G solvation = -26401.374511 eV Core-core repulsion = 22742.738376 eV Total energy + Delta-G solvation = -3658.636135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.93643 -39.35493 -37.83970 -36.86013 -34.78443 -34.28021 -32.46776 -30.99948 -29.50308 -28.72921 -26.30263 -25.80132 -25.18577 -23.94627 -22.00912 -21.78775 -21.16240 -20.72159 -19.25603 -17.81911 -17.28662 -16.53961 -16.11589 -15.80262 -15.34573 -15.08990 -15.05468 -14.83108 -14.38828 -14.02852 -13.85901 -13.65578 -13.51159 -13.29700 -12.81456 -12.63614 -12.59504 -12.45723 -12.36335 -12.21030 -12.02767 -11.74023 -11.48378 -11.30239 -11.10856 -10.97246 -10.89840 -10.86037 -10.81775 -10.38717 -10.28415 -10.22466 -9.77545 -9.52093 -9.03533 -8.95039 -8.35608 -7.51123 -6.49013 -4.16343 1.78428 2.12287 2.59280 3.16374 3.21273 3.28226 3.35190 4.16009 4.17452 4.31740 4.37088 4.51876 4.59348 4.63635 4.81147 4.90260 5.00214 5.01784 5.07395 5.15584 5.39218 5.39343 5.44130 5.49745 5.54035 5.61371 5.63901 5.66544 5.70878 5.72823 5.81766 5.85545 5.90941 5.99097 5.99452 6.10191 6.12316 6.17091 6.19158 6.39247 6.43337 6.64852 6.97673 7.08903 7.17936 7.45212 7.54823 7.69871 7.94796 8.21544 8.86044 9.47127 10.58508 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.003216 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.537768 B = 8703.637575 C = 9921.864715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.101 4.101 4 C -0.108 4.108 5 C 0.539 3.461 6 O -0.542 6.542 7 N -0.718 5.718 8 C 0.168 3.832 9 C -0.075 4.075 10 C -0.186 4.186 11 C -0.077 4.077 12 C -0.212 4.212 13 C 0.156 3.844 14 O -0.215 6.215 15 C -0.391 4.391 16 H 0.106 0.894 17 C 0.065 3.935 18 N -0.877 5.877 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.171 4.171 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.115 4.115 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.280 0.720 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.759 -1.005 -18.991 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.139 4.139 4 C -0.111 4.111 5 C 0.325 3.675 6 O -0.420 6.420 7 N -0.369 5.369 8 C 0.045 3.955 9 C -0.076 4.076 10 C -0.206 4.206 11 C -0.096 4.096 12 C -0.231 4.231 13 C 0.104 3.896 14 O -0.120 6.120 15 C -0.466 4.466 16 H 0.123 0.877 17 C -0.139 4.139 18 N -0.515 5.515 19 Si 0.730 3.270 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.191 4.191 24 C -0.162 4.162 25 C -0.179 4.179 26 C -0.153 4.153 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.238 0.762 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.973 -1.841 -18.831 21.388 hybrid contribution -0.787 -0.057 0.259 0.830 sum 9.186 -1.898 -18.572 20.806 Atomic orbital electron populations 1.21775 0.95555 1.01771 1.01929 1.21497 0.95968 0.96357 1.02294 1.21577 0.91734 0.97746 1.02793 1.22040 0.96515 0.99061 0.93528 1.19894 0.80434 0.82295 0.84877 1.90672 1.33722 1.30022 1.87539 1.46073 1.51784 1.33699 1.05344 1.20148 0.99162 0.96292 0.79882 1.19266 0.94345 0.96775 0.97175 1.20551 1.00479 0.98473 1.01052 1.20807 0.94619 0.98328 0.95819 1.21371 0.96549 1.00883 1.04289 1.19075 0.85183 0.92895 0.92455 1.83595 1.25705 1.47904 1.54843 1.20747 1.06029 1.00382 1.19447 0.87669 1.24473 0.95826 0.99069 0.94549 1.69645 1.19159 1.36781 1.25906 0.86187 0.78054 0.82431 0.80294 1.19842 1.20697 1.18326 1.20073 0.96186 1.03132 0.99682 1.22971 0.97673 0.94658 1.00858 1.22846 0.97143 0.96928 1.01024 1.22809 0.96866 0.99661 0.95963 0.92378 0.92844 0.92758 0.91865 0.92061 0.90851 0.91255 0.76207 0.90985 0.90887 0.87322 0.86976 0.84839 0.90957 0.86429 0.89043 0.91097 0.89947 0.91256 0.90062 0.89581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.12 -1.20 5.64 -26.73 -0.15 -1.35 16 3 C -0.10 -0.89 4.57 -26.73 -0.12 -1.01 16 4 C -0.11 -1.05 0.80 -154.84 -0.12 -1.17 16 5 C 0.54 6.89 5.75 -10.98 -0.06 6.82 16 6 O -0.54 -8.75 15.88 5.56 0.09 -8.66 16 7 N -0.72 -8.85 5.42 -61.47 -0.33 -9.18 16 8 C 0.17 2.31 5.80 -5.19 -0.03 2.28 16 9 C -0.07 -1.18 5.25 -104.65 -0.55 -1.73 16 10 C -0.19 -2.87 9.70 -39.53 -0.38 -3.26 16 11 C -0.08 -1.30 10.04 -39.61 -0.40 -1.70 16 12 C -0.21 -4.31 9.12 -39.40 -0.36 -4.67 16 13 C 0.16 3.41 6.64 -39.11 -0.26 3.15 16 14 O -0.22 -5.48 8.59 0.07 0.00 -5.48 16 15 C -0.39 -10.67 9.88 30.89 0.31 -10.37 16 16 H 0.11 2.93 5.58 -52.49 -0.29 2.64 16 17 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 18 N -0.88 -24.81 13.96 55.48 0.77 -24.04 16 19 Si 0.90 21.21 28.62 -169.99 -4.86 16.34 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.17 -3.17 9.65 -39.40 -0.38 -3.55 16 24 C -0.12 -1.01 7.22 -25.91 -0.19 -1.20 16 25 C -0.14 -1.23 7.80 -25.91 -0.20 -1.43 16 26 C -0.12 -1.06 6.40 -25.92 -0.17 -1.22 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 31 H 0.06 0.72 7.46 -51.93 -0.39 0.33 16 32 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16 33 H 0.07 0.63 7.52 -51.93 -0.39 0.24 16 34 H 0.40 4.52 7.87 -40.82 -0.32 4.20 16 35 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 36 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 38 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 39 H 0.13 2.88 5.75 -52.49 -0.30 2.58 16 40 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 42 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.90 7.38 -51.93 -0.38 0.51 16 47 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -29.56 384.39 -8.85 -38.41 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.51 Total: 6.57 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: -2.80 Total: -19.76 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.44 Total: -33.22 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.86 Total: 16.34 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.56 -8.85 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319099054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.170 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds