Wall clock time and date at job start Tue Mar 31 2020 12:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47040 * 2 1 4 4 C 1.53003 * 109.46510 * 175.08618 * 3 2 1 5 5 C 1.50704 * 112.85260 * 293.80502 * 4 3 2 6 6 O 1.21280 * 120.00006 * 125.60738 * 5 4 3 7 7 N 1.34779 * 119.99837 * 305.61504 * 5 4 3 8 8 C 1.46496 * 119.99572 * 174.83961 * 7 5 4 9 9 C 1.50706 * 109.46769 * 179.97438 * 8 7 5 10 10 C 1.38328 * 119.96383 * 269.72133 * 9 8 7 11 11 C 1.38279 * 120.13230 * 179.76819 * 10 9 8 12 12 C 1.38119 * 120.07308 * 0.50900 * 11 10 9 13 13 C 1.38857 * 119.93069 * 359.75009 * 12 11 10 14 14 O 1.35741 * 120.06930 * 179.97438 * 13 12 11 15 15 C 1.34832 * 117.00506 * 7.06681 * 14 13 12 16 16 H 1.08000 * 119.99733 * 6.18442 * 15 14 13 17 17 C 1.38652 * 120.00311 * 186.18894 * 15 14 13 18 18 N 1.31558 * 119.99718 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00237 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47006 * 89.99952 * 19 17 15 21 21 H 1.48498 * 109.47392 * 210.00146 * 19 17 15 22 22 H 1.48500 * 109.46946 * 330.00360 * 19 17 15 23 23 C 1.38074 * 119.96734 * 90.00101 * 9 8 7 24 24 C 1.53786 * 113.61096 * 162.50408 * 4 3 2 25 25 C 1.53788 * 87.07976 * 220.01842 * 24 4 3 26 26 C 1.53779 * 113.61564 * 65.00664 * 4 3 2 27 27 H 1.09004 * 109.46838 * 300.00110 * 1 2 3 28 28 H 1.09003 * 109.46978 * 59.99857 * 1 2 3 29 29 H 1.08991 * 109.47426 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47181 * 239.99598 * 2 1 3 31 31 H 1.09001 * 109.46557 * 119.99816 * 2 1 3 32 32 H 1.08994 * 109.47256 * 295.08347 * 3 2 1 33 33 H 1.08994 * 109.47034 * 55.09007 * 3 2 1 34 34 H 0.96998 * 119.99839 * 354.83235 * 7 5 4 35 35 H 1.08997 * 109.47438 * 299.99384 * 8 7 5 36 36 H 1.09001 * 109.47524 * 60.00208 * 8 7 5 37 37 H 1.07998 * 119.92824 * 359.97438 * 10 9 8 38 38 H 1.08008 * 119.95962 * 180.25876 * 11 10 9 39 39 H 1.07998 * 120.03474 * 179.77008 * 12 11 10 40 40 H 0.97000 * 119.99527 * 180.02562 * 18 17 15 41 41 H 1.08009 * 120.03242 * 359.95236 * 23 9 8 42 42 H 1.09000 * 113.60934 * 334.56184 * 24 4 3 43 43 H 1.08997 * 113.61745 * 105.46959 * 24 4 3 44 44 H 1.08992 * 113.61026 * 270.88239 * 25 24 4 45 45 H 1.08997 * 113.61563 * 139.98036 * 25 24 4 46 46 H 1.09004 * 113.61236 * 254.52293 * 26 4 3 47 47 H 1.08995 * 113.61224 * 25.42693 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5651 1.4442 0.1236 5 6 4.0451 0.9207 1.4528 6 8 4.8445 0.0095 1.4928 7 7 3.5860 1.4652 2.5970 8 6 3.9640 0.8844 3.8877 9 6 3.3235 1.6736 5.0005 10 6 3.9909 2.7499 5.5569 11 6 3.4045 3.4794 6.5748 12 6 2.1544 3.1287 7.0462 13 6 1.4843 2.0455 6.4934 14 8 0.2559 1.6981 6.9548 15 6 -0.3206 2.5289 7.8467 16 1 0.1476 3.4720 8.0870 17 6 -1.5143 2.1725 8.4553 18 7 -2.0764 2.9831 9.3258 19 14 -2.3244 0.5416 8.0392 20 1 -1.8270 -0.5083 8.9640 21 1 -3.7970 0.6697 8.1818 22 1 -1.9933 0.1670 6.6409 23 6 2.0737 1.3180 5.4674 24 6 4.2149 2.7761 -0.2871 25 6 5.3197 1.9406 -0.9552 26 6 4.2815 0.8133 -1.0821 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.7504 1.9303 -0.9307 33 1 1.6067 1.9811 0.8427 34 1 3.0054 2.2416 2.5658 35 1 3.6247 -0.1504 3.9339 36 1 5.0480 0.9166 3.9972 37 1 4.9704 3.0230 5.1933 38 1 3.9263 4.3218 7.0045 39 1 1.6986 3.6966 7.8438 40 1 -2.9114 2.7335 9.7518 41 1 1.5547 0.4752 5.0350 42 1 3.6177 3.3540 -0.9925 43 1 4.5662 3.3692 0.5572 44 1 6.1476 1.6988 -0.2887 45 1 5.6498 2.3401 -1.9141 46 1 4.6866 -0.1782 -0.8794 47 1 3.7025 0.8546 -2.0046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319099054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:25 Heat of formation + Delta-G solvation = -55.757733 kcal Electronic energy + Delta-G solvation = -26402.075933 eV Core-core repulsion = 22742.738376 eV Total energy + Delta-G solvation = -3659.337557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.83475 -40.94226 -39.00004 -38.24731 -35.88275 -35.12528 -34.46498 -32.33690 -31.03894 -29.56355 -27.57459 -27.00809 -26.49793 -24.81397 -23.36317 -22.83255 -22.27956 -21.83934 -20.30542 -19.64794 -18.85893 -17.45774 -17.17709 -16.92692 -16.81861 -16.44510 -16.01322 -15.88040 -15.68391 -15.59113 -15.24627 -14.89186 -14.56801 -14.37329 -14.23953 -14.13274 -13.87795 -13.45609 -13.32555 -13.19388 -13.10957 -13.04055 -12.58367 -12.50616 -12.49095 -12.39474 -12.01987 -11.95191 -11.82579 -11.62808 -11.37234 -11.10792 -10.99609 -10.94436 -10.77129 -10.12090 -9.80232 -9.14583 -8.51668 -6.24285 0.32864 0.62393 1.30691 1.33866 1.50309 1.59961 2.21743 2.26247 2.77531 3.01184 3.09771 3.43335 3.60499 3.68731 3.77605 3.92082 4.00933 4.05443 4.16933 4.24583 4.29016 4.38208 4.41934 4.47732 4.62468 4.68518 4.69595 4.81467 4.83867 4.87482 4.89913 4.92140 4.99317 5.06075 5.14656 5.16360 5.18408 5.26807 5.35118 5.37655 5.38835 5.44289 5.50986 5.60490 5.66687 5.72455 5.87067 6.17140 6.53121 6.83077 7.21144 7.56865 8.59924 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.003216 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.537768 B = 8703.637575 C = 9921.864715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.097 4.097 4 C -0.110 4.110 5 C 0.538 3.462 6 O -0.579 6.579 7 N -0.713 5.713 8 C 0.174 3.826 9 C -0.061 4.061 10 C -0.159 4.159 11 C -0.073 4.073 12 C -0.227 4.227 13 C 0.121 3.879 14 O -0.245 6.245 15 C -0.397 4.397 16 H 0.083 0.917 17 C 0.012 3.988 18 N -0.922 5.922 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.267 1.267 22 H -0.263 1.263 23 C -0.169 4.169 24 C -0.114 4.114 25 C -0.142 4.142 26 C -0.114 4.114 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.110 0.890 40 H 0.285 0.715 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.273 -0.668 -21.828 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.134 4.134 4 C -0.113 4.113 5 C 0.325 3.675 6 O -0.459 6.459 7 N -0.364 5.364 8 C 0.051 3.949 9 C -0.061 4.061 10 C -0.178 4.178 11 C -0.091 4.091 12 C -0.246 4.246 13 C 0.072 3.928 14 O -0.152 6.152 15 C -0.473 4.473 16 H 0.100 0.900 17 C -0.186 4.186 18 N -0.562 5.562 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.192 1.192 22 H -0.187 1.187 23 C -0.189 4.189 24 C -0.151 4.151 25 C -0.180 4.180 26 C -0.152 4.152 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.247 0.753 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.165 0.835 38 H 0.162 0.838 39 H 0.128 0.872 40 H 0.094 0.906 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.517 -1.483 -21.688 24.601 hybrid contribution -0.921 -0.124 0.983 1.353 sum 10.596 -1.606 -20.705 23.314 Atomic orbital electron populations 1.21763 0.95206 1.01767 1.02145 1.21479 0.96237 0.97002 1.01296 1.21594 0.90803 0.97071 1.03979 1.22051 0.97146 1.00346 0.91752 1.20466 0.79589 0.81544 0.85867 1.90658 1.35484 1.31673 1.88101 1.45990 1.51760 1.33828 1.04840 1.20031 0.99408 0.95675 0.79825 1.19450 0.92997 0.96597 0.97080 1.21019 1.01328 0.96590 0.98878 1.21140 0.93077 0.99163 0.95693 1.21402 0.98177 1.00681 1.04343 1.19564 0.84942 0.94461 0.93878 1.83536 1.27733 1.48157 1.55804 1.20678 1.06507 1.00256 1.19870 0.89982 1.25233 0.96404 1.02356 0.94632 1.69724 1.20131 1.38661 1.27728 0.85274 0.77736 0.78430 0.79656 1.19347 1.19158 1.18682 1.20245 0.97124 1.02825 0.98695 1.23010 0.97206 0.93749 1.01144 1.22817 0.96607 0.96910 1.01641 1.22861 0.97240 0.98486 0.96606 0.93545 0.91167 0.92969 0.91178 0.94770 0.88332 0.91562 0.75347 0.91605 0.89856 0.83474 0.83773 0.87161 0.90558 0.86113 0.86497 0.91310 0.92091 0.89289 0.92528 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.12 -2.19 5.64 30.60 0.17 -2.02 16 3 C -0.10 -1.44 4.57 30.60 0.14 -1.30 16 4 C -0.11 -1.86 0.80 -52.40 -0.04 -1.91 16 5 C 0.54 12.93 5.75 87.66 0.50 13.43 16 6 O -0.58 -18.31 15.88 -3.03 -0.05 -18.36 16 7 N -0.71 -16.08 5.42 -466.78 -2.53 -18.61 16 8 C 0.17 4.38 5.80 85.64 0.50 4.88 16 9 C -0.06 -1.76 5.25 -19.88 -0.10 -1.86 16 10 C -0.16 -4.31 9.70 22.30 0.22 -4.09 16 11 C -0.07 -2.27 10.04 22.25 0.22 -2.05 16 12 C -0.23 -9.34 9.12 22.39 0.20 -9.14 16 13 C 0.12 5.38 6.64 22.58 0.15 5.53 16 14 O -0.24 -12.93 8.59 -22.66 -0.19 -13.12 16 15 C -0.40 -22.81 9.88 67.92 0.67 -22.14 16 16 H 0.08 4.92 5.58 -2.91 -0.02 4.90 16 17 C 0.01 0.71 5.49 84.83 0.47 1.17 16 18 N -0.92 -54.24 13.96 21.61 0.30 -53.94 16 19 Si 0.97 44.86 28.62 68.60 1.96 46.83 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.17 -6.17 9.65 22.39 0.22 -5.96 16 24 C -0.11 -1.46 7.22 31.12 0.22 -1.23 16 25 C -0.14 -2.10 7.80 31.12 0.24 -1.86 16 26 C -0.11 -1.84 6.40 31.12 0.20 -1.64 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 1.14 7.76 -2.39 -0.02 1.12 16 31 H 0.03 0.78 7.46 -2.39 -0.02 0.77 16 32 H 0.10 1.02 8.05 -2.39 -0.02 1.00 16 33 H 0.07 1.04 7.52 -2.39 -0.02 1.02 16 34 H 0.41 8.17 7.87 -92.71 -0.73 7.44 16 35 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 36 H 0.08 2.00 8.08 -2.39 -0.02 1.98 16 37 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.11 5.05 5.75 -2.91 -0.02 5.03 16 40 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 42 H 0.12 0.96 8.03 -2.39 -0.02 0.94 16 43 H 0.07 0.94 8.10 -2.39 -0.02 0.92 16 44 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.21 7.38 -2.38 -0.02 1.19 16 47 H 0.11 1.24 8.10 -2.39 -0.02 1.22 16 Total: -1.00 -67.86 384.39 4.42 -63.44 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.23 Total: 25.80 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 4.69 Total: -32.04 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.23 Total: -72.55 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.24 Total: -31.48 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.96 Total: 46.83 kcal Total: -67.86 4.42 -63.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319099054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.684 kcal (2) G-P(sol) polarization free energy of solvation -67.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds