Wall clock time and date at job start Tue Mar 31 2020 13:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47256 * 2 1 4 4 C 1.53006 * 109.47120 * 119.99736 * 2 1 3 5 5 C 1.53003 * 109.47047 * 64.20387 * 4 2 1 6 6 C 1.50700 * 112.84715 * 55.35379 * 5 4 2 7 7 O 1.21284 * 119.99996 * 357.91752 * 6 5 4 8 8 N 1.34779 * 119.99778 * 177.92470 * 6 5 4 9 9 C 1.39988 * 120.00139 * 174.71484 * 8 6 5 10 10 C 1.38917 * 120.00385 * 145.78415 * 9 8 6 11 11 C 1.38003 * 119.99798 * 180.25721 * 10 9 8 12 12 C 1.38904 * 119.99926 * 359.50611 * 11 10 9 13 13 O 1.35789 * 119.99958 * 180.25724 * 12 11 10 14 14 C 1.34814 * 116.99353 * 354.06175 * 13 12 11 15 15 H 1.07997 * 120.00664 * 5.15160 * 14 13 12 16 16 C 1.38637 * 119.99452 * 185.15379 * 14 13 12 17 17 N 1.31570 * 119.99724 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00100 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47438 * 89.99711 * 18 16 14 20 20 H 1.48505 * 109.46906 * 210.00239 * 18 16 14 21 21 H 1.48505 * 109.47116 * 329.99337 * 18 16 14 22 22 C 1.38901 * 120.00692 * 0.23980 * 12 11 10 23 23 C 1.38005 * 119.99950 * 359.97438 * 22 12 11 24 24 C 1.53775 * 113.68825 * 186.62236 * 5 4 2 25 25 C 1.53781 * 87.08519 * 89.12891 * 24 5 4 26 26 C 1.53781 * 87.07997 * 25.42977 * 25 24 5 27 27 H 1.09007 * 109.47104 * 289.96556 * 1 2 3 28 28 H 1.09003 * 109.46985 * 49.96721 * 1 2 3 29 29 H 1.08996 * 109.47232 * 169.96597 * 1 2 3 30 30 H 1.08998 * 109.47352 * 239.99702 * 2 1 3 31 31 H 1.09000 * 109.47241 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47043 * 299.99955 * 3 2 1 33 33 H 1.09008 * 109.47303 * 59.99651 * 3 2 1 34 34 H 1.09004 * 109.47172 * 304.20762 * 4 2 1 35 35 H 1.08996 * 109.47355 * 184.20918 * 4 2 1 36 36 H 0.97004 * 119.99762 * 354.70211 * 8 6 5 37 37 H 1.07997 * 120.00521 * 0.02562 * 10 9 8 38 38 H 1.07997 * 120.00294 * 179.79282 * 11 10 9 39 39 H 0.97003 * 120.00010 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.00493 * 180.02562 * 22 12 11 41 41 H 1.08001 * 120.00011 * 180.02562 * 23 22 12 42 42 H 1.09002 * 113.61367 * 203.67631 * 24 5 4 43 43 H 1.08998 * 113.61890 * 334.57944 * 24 5 4 44 44 H 1.09005 * 113.61112 * 270.88177 * 25 24 5 45 45 H 1.08997 * 113.61440 * 139.97861 * 25 24 5 46 46 H 1.09003 * 113.61436 * 220.01913 * 26 25 24 47 47 H 1.09002 * 113.61160 * 89.11732 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6182 -2.1910 1.1976 6 6 2.0706 -2.8857 -0.0609 7 8 2.6668 -2.2650 -0.9153 8 7 1.8124 -4.1968 -0.2369 9 6 2.1333 -4.8166 -1.4504 10 6 2.5543 -6.1404 -1.4642 11 6 2.8757 -6.7497 -2.6600 12 6 2.7683 -6.0425 -3.8507 13 8 3.0796 -6.6437 -5.0279 14 6 3.6023 -7.8846 -4.9618 15 1 3.6789 -8.3884 -4.0096 16 6 4.0417 -8.5139 -6.1163 17 7 4.5523 -9.7247 -6.0518 18 14 3.9099 -7.6422 -7.7632 19 1 5.1502 -6.8646 -8.0123 20 1 3.7304 -8.6469 -8.8420 21 1 2.7442 -6.7224 -7.7446 22 6 2.3423 -4.7205 -3.8375 23 6 2.0251 -4.1097 -2.6413 24 6 1.9409 -2.9720 2.4824 25 6 0.5589 -2.5386 2.9994 26 6 0.1331 -2.4176 1.5266 27 1 -0.3634 0.3509 0.9660 28 1 -0.3633 0.6610 -0.7869 29 1 -0.3633 -1.0119 -0.1790 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6164 -0.2527 2.1377 35 1 3.1274 -0.6564 1.2879 36 1 1.4044 -4.7109 0.4774 37 1 2.6337 -6.6916 -0.5389 38 1 3.2062 -7.7778 -2.6706 39 1 4.8601 -10.1650 -6.8596 40 1 2.2584 -4.1708 -4.7634 41 1 1.6935 -3.0819 -2.6311 42 1 2.0319 -4.0472 2.3286 43 1 2.7709 -2.5530 3.0513 44 1 0.5702 -1.5866 3.5302 45 1 0.0311 -3.3216 3.5436 46 1 -0.4963 -1.5511 1.3238 47 1 -0.2700 -3.3413 1.1115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319138661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:49 Heat of formation + Delta-G solvation = -17.800952 kcal Electronic energy + Delta-G solvation = -26737.547722 eV Core-core repulsion = 23079.856094 eV Total energy + Delta-G solvation = -3657.691627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26864 -39.31063 -38.15565 -36.58463 -35.59394 -33.81354 -32.31764 -30.32181 -29.01480 -28.14839 -27.77351 -25.60821 -25.50390 -24.52546 -22.39622 -21.74458 -20.60236 -20.38837 -18.95462 -17.84510 -17.60731 -17.21961 -16.51491 -15.57586 -15.25619 -15.07918 -14.70015 -14.50964 -14.06351 -13.88435 -13.79748 -13.68233 -13.65909 -12.83889 -12.73485 -12.58305 -12.43875 -12.33497 -12.25752 -12.11352 -12.04040 -11.81552 -11.71555 -11.58831 -11.40755 -10.92765 -10.84577 -10.76953 -10.71099 -10.46067 -10.18273 -10.09799 -9.64557 -9.37279 -9.19661 -8.76074 -8.30260 -7.05002 -6.41769 -4.07570 1.97695 2.09861 2.77159 3.23037 3.23983 3.27622 3.41775 4.19737 4.24477 4.27850 4.32136 4.44855 4.50252 4.81258 4.88130 4.90720 4.96069 5.00551 5.11011 5.29651 5.33065 5.35347 5.48127 5.49795 5.55389 5.57154 5.61508 5.67382 5.69577 5.74596 5.75651 5.83924 5.92976 6.00050 6.05032 6.11075 6.14599 6.20409 6.23747 6.52608 6.67022 6.74676 6.92453 7.08933 7.22353 7.57513 7.66340 7.78632 8.02333 8.37000 8.93697 9.56187 10.65874 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.002801 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.005858 B = 9993.952478 C =10798.692365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.143 4.143 4 C -0.072 4.072 5 C -0.098 4.098 6 C 0.521 3.479 7 O -0.519 6.519 8 N -0.661 5.661 9 C 0.048 3.952 10 C -0.093 4.093 11 C -0.205 4.205 12 C 0.152 3.848 13 O -0.217 6.217 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.176 4.176 23 C -0.069 4.069 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.144 4.144 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.137 0.863 39 H 0.279 0.721 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 16.167 18.152 25.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 C -0.200 4.200 4 C -0.110 4.110 5 C -0.102 4.102 6 C 0.308 3.692 7 O -0.395 6.395 8 N -0.306 5.306 9 C -0.044 4.044 10 C -0.114 4.114 11 C -0.225 4.225 12 C 0.099 3.901 13 O -0.122 6.122 14 C -0.465 4.465 15 H 0.124 0.876 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.196 4.196 23 C -0.089 4.089 24 C -0.167 4.167 25 C -0.175 4.175 26 C -0.181 4.181 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.235 0.765 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.570 16.520 17.187 25.333 hybrid contribution -0.047 -0.288 -0.226 0.369 sum -8.616 16.232 16.961 25.008 Atomic orbital electron populations 1.22150 0.96144 1.01723 1.00944 1.21459 0.95226 0.96139 1.00526 1.21795 1.00959 0.96187 1.01069 1.21199 1.01131 0.90414 0.98215 1.22122 0.98245 0.97118 0.92682 1.20407 0.78825 0.81780 0.88187 1.90609 1.39516 1.64400 1.44951 1.43290 1.61801 1.09992 1.15541 1.17298 1.09105 0.93265 0.84757 1.20531 0.99597 0.93528 0.97710 1.21091 1.08084 1.01842 0.91452 1.19133 0.93749 0.91400 0.85790 1.83587 1.71288 1.31011 1.26281 1.20756 1.39589 0.88288 0.97837 0.87646 1.24462 0.95125 0.95305 0.99106 1.69652 1.39379 1.12439 1.30348 0.86180 0.79851 0.79411 0.81482 1.19857 1.20807 1.18312 1.20119 1.08577 0.92925 0.98001 1.20562 0.99017 0.99238 0.90122 1.23012 0.98428 1.00009 0.95268 1.22842 0.96387 1.01925 0.96334 1.23457 0.94587 1.03671 0.96392 0.93081 0.93115 0.92004 0.87526 0.92830 0.92924 0.93419 0.91432 0.91318 0.76489 0.86964 0.84516 0.91057 0.86156 0.85765 0.89703 0.90533 0.89813 0.91019 0.88668 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.54 37.16 0.28 -1.07 16 2 C -0.12 -1.19 2.67 -90.62 -0.24 -1.43 16 3 C -0.14 -1.31 9.17 37.15 0.34 -0.97 16 4 C -0.07 -0.67 3.97 -26.73 -0.11 -0.78 16 5 C -0.10 -0.92 0.79 -154.85 -0.12 -1.04 16 6 C 0.52 6.94 6.56 -10.98 -0.07 6.87 16 7 O -0.52 -8.78 11.48 5.55 0.06 -8.72 16 8 N -0.66 -8.67 4.94 -9.83 -0.05 -8.72 16 9 C 0.05 0.82 6.26 -83.63 -0.52 0.30 16 10 C -0.09 -1.65 9.96 -39.42 -0.39 -2.04 16 11 C -0.20 -4.36 9.16 -39.42 -0.36 -4.72 16 12 C 0.15 3.52 6.65 -39.09 -0.26 3.26 16 13 O -0.22 -5.74 8.58 -0.03 0.00 -5.74 16 14 C -0.39 -10.95 9.94 30.88 0.31 -10.64 16 15 H 0.11 3.00 5.43 -52.49 -0.29 2.72 16 16 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.43 13.96 55.48 0.77 -24.65 16 18 Si 0.91 21.80 28.62 -169.99 -4.86 16.94 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 23 C -0.07 -1.29 8.65 -39.41 -0.34 -1.64 16 24 C -0.13 -0.96 7.08 -25.92 -0.18 -1.14 16 25 C -0.14 -0.83 7.73 -25.92 -0.20 -1.03 16 26 C -0.14 -1.06 5.97 -25.92 -0.15 -1.22 16 27 H 0.05 0.38 7.63 -51.92 -0.40 -0.02 16 28 H 0.05 0.45 8.11 -51.93 -0.42 0.02 16 29 H 0.06 0.57 5.71 -51.93 -0.30 0.27 16 30 H 0.11 1.45 5.25 -51.93 -0.27 1.17 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 34 H 0.07 0.51 7.30 -51.93 -0.38 0.13 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 3.97 7.16 -40.82 -0.29 3.68 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.14 3.02 5.63 -52.49 -0.30 2.73 16 39 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 2.34 8.06 -52.48 -0.42 1.91 16 41 H 0.12 2.23 6.50 -52.49 -0.34 1.89 16 42 H 0.08 0.60 6.99 -51.93 -0.36 0.24 16 43 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.08 0.45 7.61 -51.93 -0.40 0.06 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.68 4.48 -51.93 -0.23 0.44 16 47 H 0.08 0.62 7.47 -51.93 -0.39 0.24 16 LS Contribution 364.98 15.07 5.50 5.50 Total: -1.00 -30.88 364.98 -7.97 -38.85 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.87 Total: 6.18 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.52 Total: -19.65 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.73 Total: -33.37 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.06 Total: -14.46 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.94 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.88 -7.97 -38.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319138661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.052 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds