Wall clock time and date at job start Tue Mar 31 2020 13:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47256 * 2 1 4 4 C 1.53006 * 109.47120 * 119.99736 * 2 1 3 5 5 C 1.53003 * 109.47047 * 64.20387 * 4 2 1 6 6 C 1.50700 * 112.84715 * 55.35379 * 5 4 2 7 7 O 1.21284 * 119.99996 * 357.91752 * 6 5 4 8 8 N 1.34779 * 119.99778 * 177.92470 * 6 5 4 9 9 C 1.39988 * 120.00139 * 174.71484 * 8 6 5 10 10 C 1.38917 * 120.00385 * 145.78415 * 9 8 6 11 11 C 1.38003 * 119.99798 * 180.25721 * 10 9 8 12 12 C 1.38904 * 119.99926 * 359.50611 * 11 10 9 13 13 O 1.35789 * 119.99958 * 180.25724 * 12 11 10 14 14 C 1.34814 * 116.99353 * 354.06175 * 13 12 11 15 15 H 1.07997 * 120.00664 * 5.15160 * 14 13 12 16 16 C 1.38637 * 119.99452 * 185.15379 * 14 13 12 17 17 N 1.31570 * 119.99724 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00100 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47438 * 89.99711 * 18 16 14 20 20 H 1.48505 * 109.46906 * 210.00239 * 18 16 14 21 21 H 1.48505 * 109.47116 * 329.99337 * 18 16 14 22 22 C 1.38901 * 120.00692 * 0.23980 * 12 11 10 23 23 C 1.38005 * 119.99950 * 359.97438 * 22 12 11 24 24 C 1.53775 * 113.68825 * 186.62236 * 5 4 2 25 25 C 1.53781 * 87.08519 * 89.12891 * 24 5 4 26 26 C 1.53781 * 87.07997 * 25.42977 * 25 24 5 27 27 H 1.09007 * 109.47104 * 289.96556 * 1 2 3 28 28 H 1.09003 * 109.46985 * 49.96721 * 1 2 3 29 29 H 1.08996 * 109.47232 * 169.96597 * 1 2 3 30 30 H 1.08998 * 109.47352 * 239.99702 * 2 1 3 31 31 H 1.09000 * 109.47241 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.47043 * 299.99955 * 3 2 1 33 33 H 1.09008 * 109.47303 * 59.99651 * 3 2 1 34 34 H 1.09004 * 109.47172 * 304.20762 * 4 2 1 35 35 H 1.08996 * 109.47355 * 184.20918 * 4 2 1 36 36 H 0.97004 * 119.99762 * 354.70211 * 8 6 5 37 37 H 1.07997 * 120.00521 * 0.02562 * 10 9 8 38 38 H 1.07997 * 120.00294 * 179.79282 * 11 10 9 39 39 H 0.97003 * 120.00010 * 180.02562 * 17 16 14 40 40 H 1.08003 * 120.00493 * 180.02562 * 22 12 11 41 41 H 1.08001 * 120.00011 * 180.02562 * 23 22 12 42 42 H 1.09002 * 113.61367 * 203.67631 * 24 5 4 43 43 H 1.08998 * 113.61890 * 334.57944 * 24 5 4 44 44 H 1.09005 * 113.61112 * 270.88177 * 25 24 5 45 45 H 1.08997 * 113.61440 * 139.97861 * 25 24 5 46 46 H 1.09003 * 113.61436 * 220.01913 * 26 25 24 47 47 H 1.09002 * 113.61160 * 89.11732 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6182 -2.1910 1.1976 6 6 2.0706 -2.8857 -0.0609 7 8 2.6668 -2.2650 -0.9153 8 7 1.8124 -4.1968 -0.2369 9 6 2.1333 -4.8166 -1.4504 10 6 2.5543 -6.1404 -1.4642 11 6 2.8757 -6.7497 -2.6600 12 6 2.7683 -6.0425 -3.8507 13 8 3.0796 -6.6437 -5.0279 14 6 3.6023 -7.8846 -4.9618 15 1 3.6789 -8.3884 -4.0096 16 6 4.0417 -8.5139 -6.1163 17 7 4.5523 -9.7247 -6.0518 18 14 3.9099 -7.6422 -7.7632 19 1 5.1502 -6.8646 -8.0123 20 1 3.7304 -8.6469 -8.8420 21 1 2.7442 -6.7224 -7.7446 22 6 2.3423 -4.7205 -3.8375 23 6 2.0251 -4.1097 -2.6413 24 6 1.9409 -2.9720 2.4824 25 6 0.5589 -2.5386 2.9994 26 6 0.1331 -2.4176 1.5266 27 1 -0.3634 0.3509 0.9660 28 1 -0.3633 0.6610 -0.7869 29 1 -0.3633 -1.0119 -0.1790 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6164 -0.2527 2.1377 35 1 3.1274 -0.6564 1.2879 36 1 1.4044 -4.7109 0.4774 37 1 2.6337 -6.6916 -0.5389 38 1 3.2062 -7.7778 -2.6706 39 1 4.8601 -10.1650 -6.8596 40 1 2.2584 -4.1708 -4.7634 41 1 1.6935 -3.0819 -2.6311 42 1 2.0319 -4.0472 2.3286 43 1 2.7709 -2.5530 3.0513 44 1 0.5702 -1.5866 3.5302 45 1 0.0311 -3.3216 3.5436 46 1 -0.4963 -1.5511 1.3238 47 1 -0.2700 -3.3413 1.1115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319138661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:48 Heat of formation + Delta-G solvation = -34.886165 kcal Electronic energy + Delta-G solvation = -26738.288592 eV Core-core repulsion = 23079.856094 eV Total energy + Delta-G solvation = -3658.432498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.21390 -40.87274 -39.41211 -38.02905 -36.45642 -35.13016 -34.33878 -31.93796 -30.13068 -29.27927 -28.46556 -27.31217 -26.18068 -25.59651 -23.99731 -22.98102 -21.84888 -21.18383 -20.11536 -19.48609 -19.19712 -18.45553 -17.73781 -16.65373 -16.30088 -16.20597 -16.07959 -15.69327 -15.66743 -15.43781 -15.18830 -14.71350 -14.49543 -14.43509 -14.17316 -14.08550 -13.52503 -13.33649 -13.30745 -13.18669 -13.04291 -12.84054 -12.76439 -12.68062 -12.53487 -12.40436 -12.04010 -11.99837 -11.56292 -11.49525 -11.42525 -11.15311 -11.04420 -10.73503 -10.61441 -10.28919 -9.88603 -8.67566 -8.50164 -6.21257 0.44593 0.47904 1.31219 1.34524 1.51477 1.63585 2.12115 2.28035 2.75239 3.01856 3.15278 3.52291 3.62563 3.64720 3.90493 3.93038 4.03667 4.08578 4.18034 4.24681 4.34866 4.43757 4.57053 4.66899 4.70001 4.75891 4.78564 4.85318 4.91812 4.92724 5.01880 5.04117 5.05615 5.08979 5.12052 5.16609 5.18980 5.26884 5.35303 5.40299 5.47863 5.51173 5.52108 5.55324 5.73244 5.74572 5.90153 6.18329 6.54418 6.84533 7.26892 7.58669 8.61256 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.002801 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.005858 B = 9993.952478 C =10798.692365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.141 4.141 4 C -0.070 4.070 5 C -0.100 4.100 6 C 0.517 3.483 7 O -0.556 6.556 8 N -0.653 5.653 9 C 0.076 3.924 10 C -0.088 4.088 11 C -0.212 4.212 12 C 0.113 3.887 13 O -0.245 6.245 14 C -0.398 4.398 15 H 0.086 0.914 16 C 0.012 3.988 17 N -0.922 5.922 18 Si 0.967 3.033 19 H -0.268 1.268 20 H -0.266 1.266 21 H -0.264 1.264 22 C -0.175 4.175 23 C -0.075 4.075 24 C -0.129 4.129 25 C -0.123 4.123 26 C -0.142 4.142 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.420 0.580 37 H 0.152 0.848 38 H 0.121 0.879 39 H 0.285 0.715 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.710 18.128 21.047 29.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.198 4.198 4 C -0.107 4.107 5 C -0.104 4.104 6 C 0.307 3.693 7 O -0.434 6.434 8 N -0.300 5.300 9 C -0.018 4.018 10 C -0.108 4.108 11 C -0.232 4.232 12 C 0.064 3.936 13 O -0.152 6.152 14 C -0.474 4.474 15 H 0.104 0.896 16 C -0.187 4.187 17 N -0.563 5.563 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.191 1.191 21 H -0.188 1.188 22 C -0.195 4.195 23 C -0.095 4.095 24 C -0.167 4.167 25 C -0.160 4.160 26 C -0.179 4.179 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.071 0.929 36 H 0.259 0.741 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.119 0.881 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.248 18.502 20.151 29.213 hybrid contribution 0.393 -0.669 -0.824 1.131 sum -9.856 17.833 19.327 28.084 Atomic orbital electron populations 1.22118 0.94862 1.01513 1.02042 1.21393 0.96317 0.96382 0.99513 1.21775 1.00391 0.95799 1.01858 1.21205 1.00327 0.90528 0.98665 1.22241 1.00081 0.96897 0.91135 1.21299 0.77627 0.81292 0.89090 1.90621 1.41037 1.65092 1.46626 1.43291 1.61764 1.10331 1.14592 1.17428 1.05520 0.92844 0.85964 1.20807 0.98242 0.93886 0.97847 1.21142 1.08361 1.01317 0.92375 1.19567 0.95676 0.92589 0.85812 1.83533 1.73431 1.30404 1.27854 1.20735 1.40044 0.89225 0.97441 0.89647 1.25224 0.95039 0.96022 1.02391 1.69725 1.41275 1.13782 1.31491 0.85273 0.79562 0.78489 0.77757 1.19346 1.19063 1.18816 1.20300 1.07894 0.92049 0.99267 1.20725 0.98985 0.99652 0.90115 1.23092 0.99746 1.00047 0.93833 1.22810 0.94872 1.02992 0.95373 1.23500 0.92834 1.04054 0.97501 0.90936 0.93485 0.92434 0.91207 0.93744 0.93209 0.91537 0.88797 0.92866 0.74133 0.83073 0.86098 0.90578 0.85522 0.84941 0.89175 0.90133 0.88638 0.89549 0.88143 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 7.54 71.98 0.54 -1.73 16 2 C -0.12 -2.25 2.67 -10.79 -0.03 -2.28 16 3 C -0.14 -2.39 9.17 71.98 0.66 -1.73 16 4 C -0.07 -1.12 3.97 30.60 0.12 -1.00 16 5 C -0.10 -1.58 0.79 -52.40 -0.04 -1.62 16 6 C 0.52 12.73 6.56 87.66 0.58 13.31 16 7 O -0.56 -18.42 11.48 -3.04 -0.03 -18.46 16 8 N -0.65 -15.30 4.94 -303.39 -1.50 -16.79 16 9 C 0.08 2.46 6.26 38.16 0.24 2.70 16 10 C -0.09 -2.96 9.96 22.38 0.22 -2.74 16 11 C -0.21 -9.19 9.16 22.37 0.20 -8.99 16 12 C 0.11 5.41 6.65 22.59 0.15 5.56 16 13 O -0.24 -13.50 8.58 -23.00 -0.20 -13.70 16 14 C -0.40 -23.50 9.94 67.92 0.68 -22.83 16 15 H 0.09 5.20 5.43 -2.91 -0.02 5.18 16 16 C 0.01 0.68 5.49 84.83 0.47 1.15 16 17 N -0.92 -55.13 13.96 21.61 0.30 -54.83 16 18 Si 0.97 46.09 28.62 68.60 1.96 48.06 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 22 C -0.18 -7.33 9.98 22.37 0.22 -7.10 16 23 C -0.07 -2.73 8.65 22.38 0.19 -2.54 16 24 C -0.13 -1.42 7.08 31.12 0.22 -1.20 16 25 C -0.12 -0.89 7.73 31.12 0.24 -0.65 16 26 C -0.14 -1.54 5.97 31.12 0.19 -1.35 16 27 H 0.07 0.80 7.63 -2.38 -0.02 0.78 16 28 H 0.05 0.75 8.11 -2.39 -0.02 0.73 16 29 H 0.06 0.92 5.71 -2.39 -0.01 0.91 16 30 H 0.07 1.89 5.25 -2.39 -0.01 1.88 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.09 1.04 7.30 -2.39 -0.02 1.02 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.42 6.72 7.16 -92.71 -0.66 6.05 16 37 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.12 5.61 5.63 -2.91 -0.02 5.60 16 39 H 0.28 15.63 8.31 -92.71 -0.77 14.85 16 40 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 41 H 0.13 4.67 6.50 -2.91 -0.02 4.65 16 42 H 0.09 0.90 6.99 -2.39 -0.02 0.88 16 43 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 44 H 0.10 0.52 7.61 -2.38 -0.02 0.51 16 45 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.10 1.02 4.48 -2.39 -0.01 1.01 16 47 H 0.09 0.93 7.47 -2.39 -0.02 0.91 16 Total: -1.00 -70.64 364.98 5.71 -64.92 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.33 Total: 23.86 kcal Atomic # 6 Polarization: -37.90 SS G_CDS: 4.85 Total: -33.05 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -1.20 Total: -71.63 kcal Atomic # 8 Polarization: -31.93 SS G_CDS: -0.23 Total: -32.16 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.96 Total: 48.06 kcal Total: -70.64 5.71 -64.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319138661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.038 kcal (2) G-P(sol) polarization free energy of solvation -70.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds