Wall clock time and date at job start Tue Mar 31 2020 12:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47001 * 2 1 4 4 C 1.50704 * 109.46966 * 119.99674 * 2 1 3 5 5 O 1.21289 * 120.00160 * 120.00406 * 4 2 1 6 6 N 1.34774 * 119.99788 * 300.00141 * 4 2 1 7 7 C 1.39995 * 120.00287 * 175.57356 * 6 4 2 8 8 C 1.38914 * 120.00520 * 215.14396 * 7 6 4 9 9 C 1.38009 * 119.99716 * 180.02562 * 8 7 6 10 10 C 1.38910 * 119.99904 * 0.02562 * 9 8 7 11 11 O 1.35781 * 119.99536 * 179.97438 * 10 9 8 12 12 C 1.34821 * 116.99794 * 5.40207 * 11 10 9 13 13 H 1.07995 * 119.99901 * 354.95534 * 12 11 10 14 14 C 1.38632 * 119.99756 * 174.95753 * 12 11 10 15 15 N 1.31575 * 120.00168 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99874 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47396 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47252 * 120.00116 * 16 14 12 19 19 H 1.48506 * 109.46967 * 239.99597 * 16 14 12 20 20 C 1.38898 * 120.00479 * 0.25105 * 10 9 8 21 21 C 1.38009 * 120.00316 * 359.44951 * 20 10 9 22 22 C 1.53001 * 109.47532 * 239.99578 * 2 1 3 23 23 C 1.54887 * 110.75680 * 177.98885 * 22 2 1 24 24 C 1.54268 * 104.19286 * 203.74326 * 23 22 2 25 25 C 1.53873 * 106.60139 * 23.60925 * 24 23 22 26 26 C 1.54275 * 106.59742 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47561 * 300.00477 * 1 2 3 28 28 H 1.09001 * 109.47148 * 60.00568 * 1 2 3 29 29 H 1.09004 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47344 * 184.96310 * 3 2 1 31 31 H 1.09002 * 109.47446 * 304.95738 * 3 2 1 32 32 H 1.09000 * 109.47705 * 64.95791 * 3 2 1 33 33 H 0.97009 * 120.00313 * 355.57706 * 6 4 2 34 34 H 1.07997 * 120.00501 * 0.04234 * 8 7 6 35 35 H 1.08003 * 119.99714 * 179.97438 * 9 8 7 36 36 H 0.96996 * 120.00064 * 179.97438 * 15 14 12 37 37 H 1.07998 * 119.99993 * 179.70453 * 20 10 9 38 38 H 1.07999 * 120.00175 * 180.26975 * 21 20 10 39 39 H 1.09003 * 110.66940 * 301.42571 * 22 2 1 40 40 H 1.08999 * 110.48401 * 322.41911 * 23 22 2 41 41 H 1.08992 * 110.49008 * 85.06437 * 23 22 2 42 42 H 1.08995 * 110.02958 * 264.31993 * 24 23 22 43 43 H 1.09006 * 110.03036 * 142.89519 * 24 23 22 44 44 H 1.08993 * 110.03161 * 240.71594 * 25 24 23 45 45 H 1.08993 * 110.07449 * 119.30584 * 25 24 23 46 46 H 1.08998 * 110.48285 * 217.71435 * 26 25 24 47 47 H 1.08999 * 110.59344 * 95.12646 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.0949 -0.9610 3.5962 8 6 1.2638 -0.9961 4.7088 9 6 1.6470 -1.6968 5.8344 10 6 2.8639 -2.3664 5.8549 11 8 3.2410 -3.0553 6.9625 12 6 2.3426 -3.1432 7.9640 13 1 1.4060 -2.6097 7.8976 14 6 2.6213 -3.9185 9.0789 15 7 3.7622 -4.5689 9.1596 16 14 1.3763 -4.0409 10.4662 17 1 0.1830 -3.2218 10.1342 18 1 0.9706 -5.4584 10.6436 19 1 1.9860 -3.5395 11.7241 20 6 3.6974 -2.3265 4.7446 21 6 3.3117 -1.6310 3.6167 22 6 2.0401 -0.7213 -1.2492 23 6 3.5877 -0.6948 -1.3048 24 6 3.9154 -0.8698 -2.8021 25 6 2.6762 -0.3962 -3.5816 26 6 1.6383 0.0495 -2.5308 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1263 1.4438 -0.0889 31 1 1.6059 1.9813 -0.8422 32 1 1.7510 1.9301 0.9310 33 1 1.2031 0.5745 2.5446 34 1 0.3178 -0.4755 4.6929 35 1 1.0010 -1.7238 6.6995 36 1 3.9573 -5.1110 9.9399 37 1 4.6456 -2.8431 4.7624 38 1 3.9579 -1.6036 2.7518 39 1 1.6670 -1.7450 -1.2816 40 1 3.9662 0.2603 -0.9406 41 1 4.0045 -1.5178 -0.7244 42 1 4.1155 -1.9187 -3.0204 43 1 4.7794 -0.2611 -3.0688 44 1 2.2748 -1.2153 -4.1782 45 1 2.9380 0.4421 -4.2272 46 1 0.6328 -0.2301 -2.8453 47 1 1.6996 1.1249 -2.3635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335865892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:48 Heat of formation + Delta-G solvation = -53.211347 kcal Electronic energy + Delta-G solvation = -26535.530716 eV Core-core repulsion = 22876.303579 eV Total energy + Delta-G solvation = -3659.227137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -40.81155 -39.08487 -38.07930 -36.36869 -34.79325 -33.65000 -32.14620 -30.19891 -28.96775 -28.27565 -27.59378 -27.47296 -25.37573 -23.84776 -22.24044 -21.56140 -20.44281 -20.22530 -18.82762 -17.94796 -17.46106 -16.88486 -16.19160 -15.90038 -15.30115 -15.05828 -14.55170 -14.51835 -14.17971 -13.92597 -13.73215 -13.56446 -13.52846 -13.08777 -12.82334 -12.63882 -12.34638 -12.25790 -12.09960 -11.81264 -11.64885 -11.55011 -11.50727 -11.30086 -11.10972 -11.08945 -11.01055 -10.70555 -10.61917 -10.56433 -10.42972 -10.37709 -9.61778 -9.41284 -9.16675 -8.69092 -8.18740 -6.91105 -6.43484 -4.01587 2.12258 2.22769 2.89941 3.13228 3.14306 3.19686 3.32422 3.97606 4.28140 4.39717 4.48190 4.58703 4.75139 4.79954 4.81550 5.06169 5.11272 5.23607 5.32533 5.34203 5.35153 5.41484 5.48750 5.52081 5.56526 5.59754 5.64323 5.66234 5.77007 5.80727 5.83909 5.85125 5.94432 6.03854 6.14530 6.17029 6.24526 6.31292 6.34802 6.40256 6.82744 6.87979 7.01821 7.18922 7.24052 7.42773 7.75882 7.81569 8.01180 8.44098 9.01989 9.72840 10.74645 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.002463 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.348435 B =11363.407953 C =11878.390170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C -0.148 4.148 4 C 0.515 3.485 5 O -0.521 6.521 6 N -0.660 5.660 7 C 0.036 3.964 8 C -0.091 4.091 9 C -0.220 4.220 10 C 0.147 3.853 11 O -0.178 6.178 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.862 5.862 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.179 4.179 21 C -0.067 4.067 22 C -0.065 4.065 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.399 0.601 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.269 0.731 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.178 12.668 -20.954 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.076 4.076 3 C -0.205 4.205 4 C 0.302 3.698 5 O -0.397 6.397 6 N -0.305 5.305 7 C -0.056 4.056 8 C -0.111 4.111 9 C -0.240 4.240 10 C 0.093 3.907 11 O -0.081 6.081 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.497 5.497 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.199 4.199 21 C -0.087 4.087 22 C -0.084 4.084 23 C -0.160 4.160 24 C -0.163 4.163 25 C -0.161 4.161 26 C -0.161 4.161 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.234 0.766 34 H 0.127 0.873 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.081 0.919 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.360 11.675 -20.835 24.477 hybrid contribution -1.027 0.335 0.818 1.356 sum -6.388 12.011 -20.016 24.201 Atomic orbital electron populations 1.21870 0.92599 1.02820 1.02542 1.20746 0.96978 0.96462 0.93397 1.22049 1.02293 0.93701 1.02447 1.20542 0.80529 0.84555 0.84178 1.90670 1.36554 1.26174 1.86254 1.43254 1.56534 1.26111 1.04558 1.17282 0.95988 1.04755 0.87606 1.20483 0.97510 1.00101 0.93052 1.20972 0.99122 1.04320 0.99570 1.19414 0.92315 0.91208 0.87775 1.83994 1.40374 1.62566 1.21162 1.21357 0.99188 1.30410 0.95762 0.89052 1.25290 0.97529 0.95505 0.98282 1.70057 1.22052 1.28242 1.29375 0.85649 0.79400 0.78492 0.79873 1.19139 1.20156 1.20173 1.20157 1.01355 1.06397 0.92015 1.20736 0.94280 0.96575 0.97119 1.21889 0.96061 0.98986 0.91430 1.22555 0.95048 1.02722 0.95667 1.22142 0.97505 1.01047 0.95644 1.22111 0.95791 1.00480 0.97753 1.22544 0.98543 1.00325 0.94663 0.92154 0.91333 0.91972 0.91360 0.91083 0.92272 0.76599 0.87280 0.85164 0.92083 0.86202 0.85337 0.90074 0.91711 0.89988 0.92033 0.92232 0.92129 0.92167 0.91851 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.20 37.16 0.30 -0.82 16 2 C -0.07 -0.69 0.45 -155.66 -0.07 -0.76 16 3 C -0.15 -1.13 7.74 37.16 0.29 -0.84 16 4 C 0.52 7.08 6.08 -10.98 -0.07 7.02 16 5 O -0.52 -9.11 11.69 5.55 0.06 -9.04 16 6 N -0.66 -8.99 5.10 -9.82 -0.05 -9.04 16 7 C 0.04 0.64 6.30 -83.62 -0.53 0.11 16 8 C -0.09 -1.65 9.96 -39.41 -0.39 -2.04 16 9 C -0.22 -4.76 9.16 -39.42 -0.36 -5.12 16 10 C 0.15 3.60 6.65 -39.09 -0.26 3.34 16 11 O -0.18 -5.12 9.76 -0.02 0.00 -5.12 16 12 C -0.39 -10.96 9.48 30.88 0.29 -10.66 16 13 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 14 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 15 N -0.86 -25.48 13.67 55.48 0.76 -24.73 16 16 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 C -0.18 -4.00 9.98 -39.42 -0.39 -4.39 16 21 C -0.07 -1.34 8.69 -39.41 -0.34 -1.68 16 22 C -0.06 -0.64 1.83 -88.64 -0.16 -0.80 16 23 C -0.12 -1.30 5.33 -25.07 -0.13 -1.44 16 24 C -0.13 -1.12 6.80 -25.61 -0.17 -1.29 16 25 C -0.12 -0.94 6.80 -25.61 -0.17 -1.12 16 26 C -0.12 -0.93 5.27 -25.08 -0.13 -1.06 16 27 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 28 H 0.07 0.43 7.34 -51.93 -0.38 0.05 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.57 5.88 -51.93 -0.31 0.27 16 31 H 0.07 0.43 6.30 -51.93 -0.33 0.10 16 32 H 0.06 0.40 7.34 -51.93 -0.38 0.02 16 33 H 0.40 4.10 7.61 -40.82 -0.31 3.79 16 34 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.13 2.79 5.63 -52.48 -0.30 2.49 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 38 H 0.13 2.49 6.23 -52.49 -0.33 2.17 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.66 5.70 -51.93 -0.30 0.36 16 41 H 0.08 1.09 6.81 -51.93 -0.35 0.74 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.43 8.01 -51.93 -0.42 0.02 16 47 H 0.07 0.47 5.75 -51.93 -0.30 0.17 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -32.18 364.08 -8.05 -40.22 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.88 Total: 7.27 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.40 Total: -20.59 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.71 Total: -33.76 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.06 Total: -14.16 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.18 -8.05 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335865892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.989 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds