Wall clock time and date at job start Tue Mar 31 2020 12:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47001 * 2 1 4 4 C 1.50704 * 109.46966 * 119.99674 * 2 1 3 5 5 O 1.21289 * 120.00160 * 120.00406 * 4 2 1 6 6 N 1.34774 * 119.99788 * 300.00141 * 4 2 1 7 7 C 1.39995 * 120.00287 * 175.57356 * 6 4 2 8 8 C 1.38914 * 120.00520 * 215.14396 * 7 6 4 9 9 C 1.38009 * 119.99716 * 180.02562 * 8 7 6 10 10 C 1.38910 * 119.99904 * 0.02562 * 9 8 7 11 11 O 1.35781 * 119.99536 * 179.97438 * 10 9 8 12 12 C 1.34821 * 116.99794 * 5.40207 * 11 10 9 13 13 H 1.07995 * 119.99901 * 354.95534 * 12 11 10 14 14 C 1.38632 * 119.99756 * 174.95753 * 12 11 10 15 15 N 1.31575 * 120.00168 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99874 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47396 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47252 * 120.00116 * 16 14 12 19 19 H 1.48506 * 109.46967 * 239.99597 * 16 14 12 20 20 C 1.38898 * 120.00479 * 0.25105 * 10 9 8 21 21 C 1.38009 * 120.00316 * 359.44951 * 20 10 9 22 22 C 1.53001 * 109.47532 * 239.99578 * 2 1 3 23 23 C 1.54887 * 110.75680 * 177.98885 * 22 2 1 24 24 C 1.54268 * 104.19286 * 203.74326 * 23 22 2 25 25 C 1.53873 * 106.60139 * 23.60925 * 24 23 22 26 26 C 1.54275 * 106.59742 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47561 * 300.00477 * 1 2 3 28 28 H 1.09001 * 109.47148 * 60.00568 * 1 2 3 29 29 H 1.09004 * 109.47288 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47344 * 184.96310 * 3 2 1 31 31 H 1.09002 * 109.47446 * 304.95738 * 3 2 1 32 32 H 1.09000 * 109.47705 * 64.95791 * 3 2 1 33 33 H 0.97009 * 120.00313 * 355.57706 * 6 4 2 34 34 H 1.07997 * 120.00501 * 0.04234 * 8 7 6 35 35 H 1.08003 * 119.99714 * 179.97438 * 9 8 7 36 36 H 0.96996 * 120.00064 * 179.97438 * 15 14 12 37 37 H 1.07998 * 119.99993 * 179.70453 * 20 10 9 38 38 H 1.07999 * 120.00175 * 180.26975 * 21 20 10 39 39 H 1.09003 * 110.66940 * 301.42571 * 22 2 1 40 40 H 1.08999 * 110.48401 * 322.41911 * 23 22 2 41 41 H 1.08992 * 110.49008 * 85.06437 * 23 22 2 42 42 H 1.08995 * 110.02958 * 264.31993 * 24 23 22 43 43 H 1.09006 * 110.03036 * 142.89519 * 24 23 22 44 44 H 1.08993 * 110.03161 * 240.71594 * 25 24 23 45 45 H 1.08993 * 110.07449 * 119.30584 * 25 24 23 46 46 H 1.08998 * 110.48285 * 217.71435 * 26 25 24 47 47 H 1.08999 * 110.59344 * 95.12646 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1194 6 7 1.7066 -0.2498 2.4546 7 6 2.0949 -0.9610 3.5962 8 6 1.2638 -0.9961 4.7088 9 6 1.6470 -1.6968 5.8344 10 6 2.8639 -2.3664 5.8549 11 8 3.2410 -3.0553 6.9625 12 6 2.3426 -3.1432 7.9640 13 1 1.4060 -2.6097 7.8976 14 6 2.6213 -3.9185 9.0789 15 7 3.7622 -4.5689 9.1596 16 14 1.3763 -4.0409 10.4662 17 1 0.1830 -3.2218 10.1342 18 1 0.9706 -5.4584 10.6436 19 1 1.9860 -3.5395 11.7241 20 6 3.6974 -2.3265 4.7446 21 6 3.3117 -1.6310 3.6167 22 6 2.0401 -0.7213 -1.2492 23 6 3.5877 -0.6948 -1.3048 24 6 3.9154 -0.8698 -2.8021 25 6 2.6762 -0.3962 -3.5816 26 6 1.6383 0.0495 -2.5308 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1263 1.4438 -0.0889 31 1 1.6059 1.9813 -0.8422 32 1 1.7510 1.9301 0.9310 33 1 1.2031 0.5745 2.5446 34 1 0.3178 -0.4755 4.6929 35 1 1.0010 -1.7238 6.6995 36 1 3.9573 -5.1110 9.9399 37 1 4.6456 -2.8431 4.7624 38 1 3.9579 -1.6036 2.7518 39 1 1.6670 -1.7450 -1.2816 40 1 3.9662 0.2603 -0.9406 41 1 4.0045 -1.5178 -0.7244 42 1 4.1155 -1.9187 -3.0204 43 1 4.7794 -0.2611 -3.0688 44 1 2.2748 -1.2153 -4.1782 45 1 2.9380 0.4421 -4.2272 46 1 0.6328 -0.2301 -2.8453 47 1 1.6996 1.1249 -2.3635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335865892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:46 Heat of formation + Delta-G solvation = -72.320853 kcal Electronic energy + Delta-G solvation = -26536.359367 eV Core-core repulsion = 22876.303579 eV Total energy + Delta-G solvation = -3660.055788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.92329 -40.66932 -39.28537 -37.93559 -35.80295 -34.92935 -34.09140 -31.88368 -29.72032 -29.61064 -28.44781 -28.16934 -27.32921 -24.89280 -23.89158 -22.93511 -21.56835 -21.08131 -20.00020 -19.59125 -18.98841 -18.28578 -17.48226 -16.77438 -16.39499 -16.30864 -16.09693 -15.92878 -15.50177 -15.29599 -15.14628 -14.68297 -14.53827 -14.44958 -14.18686 -13.83054 -13.57400 -13.31777 -13.21848 -13.11008 -12.96117 -12.72954 -12.70939 -12.42578 -12.30538 -12.08462 -11.96116 -11.88230 -11.78169 -11.40945 -11.35524 -11.24510 -11.08502 -11.03290 -10.57193 -10.44741 -9.85123 -8.61256 -8.45956 -6.13602 0.50427 0.54779 1.36277 1.43966 1.55133 1.71110 2.14771 2.19798 2.82190 3.14908 3.49709 3.51433 3.64325 3.76880 3.94594 4.05178 4.10062 4.12846 4.16743 4.33315 4.48407 4.58127 4.62469 4.65522 4.73122 4.75958 4.79015 4.81963 4.86332 4.95364 4.99437 5.03454 5.07570 5.16049 5.17060 5.18819 5.20826 5.29173 5.31537 5.37980 5.45529 5.48666 5.56309 5.60391 5.62472 5.68213 6.02360 6.17511 6.58487 6.98164 7.29556 7.79175 8.77613 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.031834 B = 0.002463 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.348435 B =11363.407953 C =11878.390170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C -0.147 4.147 4 C 0.510 3.490 5 O -0.562 6.562 6 N -0.650 5.650 7 C 0.064 3.936 8 C -0.080 4.080 9 C -0.220 4.220 10 C 0.107 3.893 11 O -0.232 6.232 12 C -0.412 4.412 13 H 0.107 0.893 14 C -0.027 4.027 15 N -0.923 5.923 16 Si 1.021 2.979 17 H -0.247 1.247 18 H -0.271 1.271 19 H -0.269 1.269 20 C -0.192 4.192 21 C -0.074 4.074 22 C -0.067 4.067 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.114 4.114 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.422 0.578 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.272 0.728 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.602 16.043 -23.017 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.204 4.204 4 C 0.300 3.700 5 O -0.439 6.439 6 N -0.296 5.296 7 C -0.030 4.030 8 C -0.100 4.100 9 C -0.240 4.240 10 C 0.057 3.943 11 O -0.139 6.139 12 C -0.488 4.488 13 H 0.124 0.876 14 C -0.224 4.224 15 N -0.562 5.562 16 Si 0.841 3.159 17 H -0.170 1.170 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.212 4.212 21 C -0.094 4.094 22 C -0.086 4.086 23 C -0.162 4.162 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.152 4.152 27 H 0.094 0.906 28 H 0.113 0.887 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.261 0.739 34 H 0.176 0.824 35 H 0.150 0.850 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.818 15.119 -22.968 28.876 hybrid contribution 0.073 -0.596 1.100 1.253 sum -8.745 14.523 -21.868 27.669 Atomic orbital electron populations 1.21920 0.90666 1.02518 1.04656 1.20762 0.98288 0.97081 0.90406 1.22099 1.01798 0.92102 1.04432 1.21517 0.79302 0.84057 0.85170 1.90679 1.38249 1.28189 1.86827 1.43232 1.56526 1.26639 1.03243 1.17417 0.94411 1.02370 0.88764 1.20852 0.98980 0.98871 0.91322 1.21132 0.97855 1.04042 1.00930 1.19853 0.94334 0.92526 0.87622 1.83963 1.41930 1.65239 1.22782 1.21915 0.99794 1.30920 0.96136 0.87594 1.26653 0.99817 0.94780 1.01112 1.70214 1.24856 1.30309 1.30790 0.84491 0.76906 0.78835 0.75717 1.17000 1.19629 1.19400 1.20262 1.01141 1.07124 0.92634 1.20830 0.95548 0.96844 0.96156 1.21876 0.95210 0.98332 0.93181 1.22517 0.95922 1.01421 0.96364 1.22145 0.98837 1.00730 0.94706 1.22122 0.94935 1.01129 0.97820 1.22529 0.99017 1.00868 0.92740 0.90613 0.88741 0.93509 0.92378 0.88410 0.90907 0.73929 0.82394 0.85015 0.91903 0.87278 0.85123 0.92577 0.91145 0.93763 0.93124 0.91434 0.92050 0.90528 0.90574 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.20 71.98 0.59 -1.05 16 2 C -0.06 -1.00 0.45 -52.93 -0.02 -1.03 16 3 C -0.15 -1.61 7.74 71.98 0.56 -1.06 16 4 C 0.51 13.10 6.08 87.66 0.53 13.63 16 5 O -0.56 -19.73 11.69 -3.06 -0.04 -19.77 16 6 N -0.65 -15.63 5.10 -303.38 -1.55 -17.18 16 7 C 0.06 2.16 6.30 38.16 0.24 2.40 16 8 C -0.08 -2.68 9.96 22.38 0.22 -2.46 16 9 C -0.22 -9.44 9.16 22.38 0.20 -9.23 16 10 C 0.11 5.51 6.65 22.59 0.15 5.66 16 11 O -0.23 -14.29 9.76 -22.99 -0.22 -14.51 16 12 C -0.41 -24.04 9.48 67.91 0.64 -23.40 16 13 H 0.11 5.57 5.20 -2.91 -0.02 5.55 16 14 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 15 N -0.92 -57.59 13.67 21.61 0.30 -57.30 16 16 Si 1.02 42.88 29.55 68.60 2.03 44.91 16 17 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 20 C -0.19 -9.01 9.98 22.37 0.22 -8.79 16 21 C -0.07 -2.96 8.69 22.38 0.19 -2.77 16 22 C -0.07 -1.21 1.83 -9.51 -0.02 -1.22 16 23 C -0.12 -2.61 5.33 31.67 0.17 -2.44 16 24 C -0.13 -2.14 6.80 31.32 0.21 -1.93 16 25 C -0.12 -1.54 6.80 31.32 0.21 -1.33 16 26 C -0.11 -1.31 5.27 31.66 0.17 -1.14 16 27 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 28 H 0.09 0.67 7.34 -2.39 -0.02 0.65 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.79 5.88 -2.39 -0.01 0.77 16 31 H 0.10 0.61 6.30 -2.39 -0.02 0.59 16 32 H 0.07 0.62 7.34 -2.39 -0.02 0.61 16 33 H 0.42 6.61 7.61 -92.70 -0.71 5.90 16 34 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 35 H 0.13 5.56 5.63 -2.91 -0.02 5.55 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.11 5.18 8.06 -2.91 -0.02 5.16 16 38 H 0.13 5.21 6.23 -2.91 -0.02 5.19 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.36 5.70 -2.39 -0.01 1.35 16 41 H 0.04 1.25 6.81 -2.39 -0.02 1.23 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.72 8.01 -2.39 -0.02 0.70 16 47 H 0.09 0.73 5.75 -2.39 -0.01 0.71 16 Total: -1.00 -77.27 364.08 5.55 -71.72 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.29 Total: 29.34 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 4.75 Total: -37.22 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.25 Total: -74.47 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.26 Total: -34.28 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -77.27 5.55 -71.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335865892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.600 kcal (2) G-P(sol) polarization free energy of solvation -77.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds