Wall clock time and date at job start Tue Mar 31 2020 12:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47241 * 2 1 4 4 O 1.42896 * 109.46493 * 65.02609 * 3 2 1 5 5 C 1.53041 * 109.45536 * 305.06394 * 3 2 1 6 6 C 1.53199 * 109.31069 * 178.61437 * 5 3 2 7 7 N 1.46926 * 108.77265 * 54.63943 * 6 5 3 8 8 C 1.34779 * 120.62923 * 126.41653 * 7 6 5 9 9 O 1.21277 * 119.99938 * 179.97438 * 8 7 6 10 10 C 1.50696 * 120.00166 * 359.97321 * 8 7 6 11 11 H 1.09010 * 109.46955 * 300.00378 * 10 8 7 12 12 C 1.50697 * 109.47253 * 60.00137 * 10 8 7 13 13 H 1.08006 * 120.00336 * 235.35222 * 12 10 8 14 14 C 1.37876 * 120.00231 * 55.35094 * 12 10 8 15 15 N 1.31514 * 119.99469 * 1.99875 * 14 12 10 16 16 Si 1.86795 * 120.00354 * 182.00002 * 14 12 10 17 17 H 1.48505 * 109.47007 * 90.00146 * 16 14 12 18 18 H 1.48502 * 109.47350 * 209.99760 * 16 14 12 19 19 H 1.48495 * 109.47232 * 330.00131 * 16 14 12 20 20 C 1.50695 * 109.47382 * 180.02562 * 10 8 7 21 21 C 1.38240 * 119.99935 * 226.95958 * 20 10 8 22 22 C 1.38229 * 120.00040 * 179.80637 * 21 20 10 23 23 C 1.38237 * 120.00140 * 0.39628 * 22 21 20 24 24 C 1.38240 * 119.99716 * 359.85153 * 23 22 21 25 25 C 1.38228 * 120.00042 * 359.96360 * 24 23 22 26 26 C 1.46921 * 118.74028 * 306.38774 * 7 6 5 27 27 C 1.53043 * 109.46065 * 185.00259 * 3 2 1 28 28 H 1.09003 * 109.46979 * 300.00345 * 1 2 3 29 29 H 1.08994 * 109.46848 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46905 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.47273 * 119.99497 * 2 1 3 32 32 H 1.09001 * 109.47703 * 239.99800 * 2 1 3 33 33 H 0.96703 * 113.99677 * 300.00675 * 4 3 2 34 34 H 1.08993 * 109.50162 * 298.56752 * 5 3 2 35 35 H 1.08997 * 109.49827 * 58.66844 * 5 3 2 36 36 H 1.09001 * 109.58726 * 294.85370 * 6 5 3 37 37 H 1.08997 * 109.58522 * 174.42663 * 6 5 3 38 38 H 0.97007 * 120.00235 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00053 * 359.97438 * 21 20 10 40 40 H 1.08002 * 120.00509 * 180.22500 * 22 21 20 41 41 H 1.08000 * 120.00410 * 179.83295 * 23 22 21 42 42 H 1.07996 * 119.99638 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.00257 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.59034 * 293.82539 * 26 7 6 45 45 H 1.08998 * 109.58848 * 173.39648 * 26 7 6 46 46 H 1.08997 * 109.49453 * 301.33373 * 27 3 2 47 47 H 1.08999 * 109.50018 * 61.43109 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6624 2.0811 1.2213 5 6 1.4283 2.1995 -1.1811 6 6 1.9139 3.6523 -1.1580 7 7 3.3830 3.6594 -1.1323 8 6 4.0823 4.3607 -2.0465 9 8 5.2946 4.3589 -2.0144 10 6 3.3579 5.1468 -3.1086 11 1 2.7458 4.4714 -3.7065 12 6 2.4753 6.1790 -2.4554 13 1 1.4194 6.2074 -2.6809 14 6 3.0157 7.0871 -1.5698 15 7 4.3078 7.0778 -1.3251 16 14 1.9126 8.3305 -0.7175 17 1 1.4149 7.7577 0.5590 18 1 2.6852 9.5674 -0.4370 19 1 0.7608 8.6551 -1.5969 20 6 4.3620 5.8340 -3.9977 21 6 4.2007 7.1686 -4.3198 22 6 5.1239 7.8000 -5.1320 23 6 6.2040 7.0947 -5.6290 24 6 6.3625 5.7587 -5.3110 25 6 5.4413 5.1284 -4.4957 26 6 4.0751 2.8882 -0.0908 27 6 3.5653 1.4440 -0.1258 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 0.7072 2.1160 1.3679 34 1 1.7362 1.7278 -2.1143 35 1 0.3414 2.1780 -1.1034 36 1 1.5305 4.1516 -0.2682 37 1 1.5615 4.1695 -2.0503 38 1 4.6882 7.7169 -0.7023 39 1 3.3549 7.7187 -3.9346 40 1 5.0000 8.8437 -5.3808 41 1 6.9239 7.5873 -6.2658 42 1 7.2061 5.2076 -5.6996 43 1 5.5649 4.0845 -4.2476 44 1 3.8679 3.3252 0.8860 45 1 5.1486 2.9014 -0.2789 46 1 3.9992 0.8848 0.7030 47 1 3.8530 0.9795 -1.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362023482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:12 Heat of formation + Delta-G solvation = -63.781101 kcal Electronic energy + Delta-G solvation = -28378.481082 eV Core-core repulsion = 24718.795605 eV Total energy + Delta-G solvation = -3659.685476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.82093 -38.57847 -37.24884 -34.67909 -33.70049 -32.93799 -31.16566 -30.55746 -29.80956 -29.62480 -27.31152 -25.21745 -23.78279 -22.86247 -21.80036 -21.21284 -20.44320 -19.78372 -18.22370 -16.98626 -16.34549 -15.75533 -15.44370 -15.02822 -14.82573 -14.66497 -14.38892 -14.16659 -13.95941 -13.69846 -13.53711 -13.05201 -12.61116 -12.49222 -12.36043 -12.24165 -12.09261 -11.83279 -11.62764 -11.52823 -11.43004 -11.16513 -11.04508 -10.98231 -10.79076 -10.74987 -10.71167 -10.32395 -10.01535 -9.96254 -9.65430 -9.51330 -9.34038 -8.67008 -8.22638 -7.65714 -7.51441 -7.35449 -6.09994 -4.24786 2.58141 2.64750 3.21995 3.30668 3.31738 4.07986 4.20889 4.33401 4.43491 4.74327 4.84000 4.95795 5.04294 5.14660 5.16886 5.38079 5.49205 5.55960 5.76186 5.79056 5.82559 5.88485 5.94893 5.98407 6.00632 6.03031 6.08263 6.14340 6.22880 6.28784 6.44640 6.48167 6.59962 6.64895 6.71592 6.79425 6.84149 6.91923 7.17023 7.24414 7.57415 7.63556 7.68033 7.72956 7.81012 7.82058 8.19717 8.29996 8.61084 8.81008 9.39558 9.73598 10.90620 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.005010 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.791726 B = 5587.000243 C = 6680.176867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.149 4.149 3 C 0.135 3.865 4 O -0.553 6.553 5 C -0.166 4.166 6 C 0.128 3.872 7 N -0.611 5.611 8 C 0.554 3.446 9 O -0.550 6.550 10 C 0.058 3.942 11 H 0.054 0.946 12 C -0.538 4.538 13 H 0.067 0.933 14 C 0.076 3.924 15 N -0.840 5.840 16 Si 0.883 3.117 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.013 4.013 21 C -0.065 4.065 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.100 4.100 26 C 0.122 3.878 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.369 0.631 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.264 0.736 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.606 -10.333 -0.039 12.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.187 4.187 3 C 0.095 3.905 4 O -0.358 6.358 5 C -0.205 4.205 6 C 0.004 3.996 7 N -0.345 5.345 8 C 0.345 3.655 9 O -0.426 6.426 10 C 0.037 3.963 11 H 0.072 0.928 12 C -0.576 4.576 13 H 0.085 0.915 14 C -0.132 4.132 15 N -0.472 5.472 16 Si 0.711 3.289 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.014 4.014 21 C -0.083 4.083 22 C -0.166 4.166 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.119 4.119 26 C -0.002 4.002 27 C -0.155 4.155 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.216 0.784 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.146 0.854 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.106 -10.155 0.138 11.368 hybrid contribution -1.053 0.708 0.822 1.512 sum -6.159 -9.447 0.959 11.318 Atomic orbital electron populations 1.21866 0.95854 1.01783 1.02027 1.22218 0.96292 0.97651 1.02572 1.21165 0.95059 0.89993 0.84312 1.86591 1.27709 1.81286 1.40237 1.22782 1.00370 0.98636 0.98676 1.21546 0.80759 0.93281 1.04008 1.47746 1.06062 1.50065 1.30651 1.21026 0.87109 0.75490 0.81912 1.90519 1.14826 1.62544 1.74757 1.17887 0.92993 0.94434 0.91002 0.92820 1.20622 0.94280 1.15347 1.27341 0.91481 1.25013 0.94792 0.97179 0.96237 1.70067 1.09995 1.34744 1.32398 0.86714 0.80797 0.81158 0.80270 1.20497 1.21169 1.19604 1.19827 0.94610 0.93911 0.93096 1.21142 0.98476 0.94467 0.94212 1.20986 0.96358 0.98694 1.00575 1.20766 0.98530 0.94803 1.02253 1.20813 0.99416 0.95058 1.00976 1.20965 0.94789 0.99722 0.96384 1.21176 0.97879 0.89266 0.91833 1.21898 0.92930 0.98686 1.01941 0.92743 0.92747 0.91927 0.91503 0.91267 0.78431 0.91183 0.90971 0.92417 0.87745 0.92525 0.85449 0.88089 0.88261 0.88161 0.87591 0.92307 0.89992 0.91191 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.21 37.16 0.34 -0.98 16 2 C -0.15 -1.50 5.23 -26.73 -0.14 -1.64 16 3 C 0.14 1.71 0.73 -90.57 -0.07 1.65 16 4 O -0.55 -7.43 11.69 -35.23 -0.41 -7.84 16 5 C -0.17 -2.19 4.64 -26.61 -0.12 -2.31 16 6 C 0.13 2.23 5.35 -3.71 -0.02 2.21 16 7 N -0.61 -12.52 2.97 -172.77 -0.51 -13.03 16 8 C 0.55 13.26 5.40 -10.99 -0.06 13.20 16 9 O -0.55 -14.87 13.37 5.56 0.07 -14.79 16 10 C 0.06 1.35 1.99 -94.08 -0.19 1.17 16 11 H 0.05 1.15 7.69 -51.92 -0.40 0.76 16 12 C -0.54 -12.86 4.98 -34.44 -0.17 -13.03 16 13 H 0.07 1.54 7.65 -52.48 -0.40 1.14 16 14 C 0.08 1.92 4.01 -17.82 -0.07 1.84 16 15 N -0.84 -23.15 10.90 55.43 0.60 -22.55 16 16 Si 0.88 19.87 29.54 -169.99 -5.02 14.85 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.01 -0.32 4.51 -104.62 -0.47 -0.79 16 21 C -0.07 -1.52 8.21 -39.58 -0.32 -1.85 16 22 C -0.15 -3.12 10.05 -39.59 -0.40 -3.52 16 23 C -0.15 -2.91 10.05 -39.58 -0.40 -3.31 16 24 C -0.14 -3.00 10.05 -39.58 -0.40 -3.40 16 25 C -0.10 -2.30 8.21 -39.59 -0.33 -2.63 16 26 C 0.12 2.29 6.19 -3.71 -0.02 2.27 16 27 C -0.12 -1.68 5.11 -26.61 -0.14 -1.82 16 28 H 0.05 0.42 6.89 -51.93 -0.36 0.06 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 6.31 -51.93 -0.33 0.19 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.37 3.70 7.53 45.56 0.34 4.04 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.79 6.27 -51.93 -0.33 0.46 16 36 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 37 H 0.10 1.91 4.85 -51.93 -0.25 1.66 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 39 H 0.13 3.07 6.04 -52.48 -0.32 2.75 16 40 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.11 2.41 7.02 -52.48 -0.37 2.05 16 44 H 0.06 1.16 7.81 -51.93 -0.41 0.76 16 45 H 0.08 1.68 7.01 -51.93 -0.36 1.31 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 357.89 15.07 5.39 5.39 Total: -1.00 -30.27 357.89 -9.37 -39.63 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.52 Total: 11.29 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -2.97 Total: -12.94 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.09 Total: -35.59 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.34 Total: -22.64 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.27 -9.37 -39.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362023482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.150 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds