Wall clock time and date at job start Tue Mar 31 2020 12:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47241 * 2 1 4 4 O 1.42896 * 109.46493 * 65.02609 * 3 2 1 5 5 C 1.53041 * 109.45536 * 305.06394 * 3 2 1 6 6 C 1.53199 * 109.31069 * 178.61437 * 5 3 2 7 7 N 1.46926 * 108.77265 * 54.63943 * 6 5 3 8 8 C 1.34779 * 120.62923 * 126.41653 * 7 6 5 9 9 O 1.21277 * 119.99938 * 179.97438 * 8 7 6 10 10 C 1.50696 * 120.00166 * 359.97321 * 8 7 6 11 11 H 1.09010 * 109.46955 * 300.00378 * 10 8 7 12 12 C 1.50697 * 109.47253 * 60.00137 * 10 8 7 13 13 H 1.08006 * 120.00336 * 235.35222 * 12 10 8 14 14 C 1.37876 * 120.00231 * 55.35094 * 12 10 8 15 15 N 1.31514 * 119.99469 * 1.99875 * 14 12 10 16 16 Si 1.86795 * 120.00354 * 182.00002 * 14 12 10 17 17 H 1.48505 * 109.47007 * 90.00146 * 16 14 12 18 18 H 1.48502 * 109.47350 * 209.99760 * 16 14 12 19 19 H 1.48495 * 109.47232 * 330.00131 * 16 14 12 20 20 C 1.50695 * 109.47382 * 180.02562 * 10 8 7 21 21 C 1.38240 * 119.99935 * 226.95958 * 20 10 8 22 22 C 1.38229 * 120.00040 * 179.80637 * 21 20 10 23 23 C 1.38237 * 120.00140 * 0.39628 * 22 21 20 24 24 C 1.38240 * 119.99716 * 359.85153 * 23 22 21 25 25 C 1.38228 * 120.00042 * 359.96360 * 24 23 22 26 26 C 1.46921 * 118.74028 * 306.38774 * 7 6 5 27 27 C 1.53043 * 109.46065 * 185.00259 * 3 2 1 28 28 H 1.09003 * 109.46979 * 300.00345 * 1 2 3 29 29 H 1.08994 * 109.46848 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46905 * 60.00172 * 1 2 3 31 31 H 1.09000 * 109.47273 * 119.99497 * 2 1 3 32 32 H 1.09001 * 109.47703 * 239.99800 * 2 1 3 33 33 H 0.96703 * 113.99677 * 300.00675 * 4 3 2 34 34 H 1.08993 * 109.50162 * 298.56752 * 5 3 2 35 35 H 1.08997 * 109.49827 * 58.66844 * 5 3 2 36 36 H 1.09001 * 109.58726 * 294.85370 * 6 5 3 37 37 H 1.08997 * 109.58522 * 174.42663 * 6 5 3 38 38 H 0.97007 * 120.00235 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00053 * 359.97438 * 21 20 10 40 40 H 1.08002 * 120.00509 * 180.22500 * 22 21 20 41 41 H 1.08000 * 120.00410 * 179.83295 * 23 22 21 42 42 H 1.07996 * 119.99638 * 179.97438 * 24 23 22 43 43 H 1.08003 * 120.00257 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.59034 * 293.82539 * 26 7 6 45 45 H 1.08998 * 109.58848 * 173.39648 * 26 7 6 46 46 H 1.08997 * 109.49453 * 301.33373 * 27 3 2 47 47 H 1.08999 * 109.50018 * 61.43109 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6624 2.0811 1.2213 5 6 1.4283 2.1995 -1.1811 6 6 1.9139 3.6523 -1.1580 7 7 3.3830 3.6594 -1.1323 8 6 4.0823 4.3607 -2.0465 9 8 5.2946 4.3589 -2.0144 10 6 3.3579 5.1468 -3.1086 11 1 2.7458 4.4714 -3.7065 12 6 2.4753 6.1790 -2.4554 13 1 1.4194 6.2074 -2.6809 14 6 3.0157 7.0871 -1.5698 15 7 4.3078 7.0778 -1.3251 16 14 1.9126 8.3305 -0.7175 17 1 1.4149 7.7577 0.5590 18 1 2.6852 9.5674 -0.4370 19 1 0.7608 8.6551 -1.5969 20 6 4.3620 5.8340 -3.9977 21 6 4.2007 7.1686 -4.3198 22 6 5.1239 7.8000 -5.1320 23 6 6.2040 7.0947 -5.6290 24 6 6.3625 5.7587 -5.3110 25 6 5.4413 5.1284 -4.4957 26 6 4.0751 2.8882 -0.0908 27 6 3.5653 1.4440 -0.1258 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 0.7072 2.1160 1.3679 34 1 1.7362 1.7278 -2.1143 35 1 0.3414 2.1780 -1.1034 36 1 1.5305 4.1516 -0.2682 37 1 1.5615 4.1695 -2.0503 38 1 4.6882 7.7169 -0.7023 39 1 3.3549 7.7187 -3.9346 40 1 5.0000 8.8437 -5.3808 41 1 6.9239 7.5873 -6.2658 42 1 7.2061 5.2076 -5.6996 43 1 5.5649 4.0845 -4.2476 44 1 3.8679 3.3252 0.8860 45 1 5.1486 2.9014 -0.2789 46 1 3.9992 0.8848 0.7030 47 1 3.8530 0.9795 -1.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362023482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:09 Heat of formation + Delta-G solvation = -81.796530 kcal Electronic energy + Delta-G solvation = -28379.262289 eV Core-core repulsion = 24718.795605 eV Total energy + Delta-G solvation = -3660.466684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.26675 -40.07547 -38.85906 -36.19559 -35.54808 -33.87623 -32.83313 -32.07135 -31.35221 -30.98711 -29.02781 -26.58487 -25.45113 -24.18961 -23.11937 -22.88016 -21.90203 -21.06407 -19.82427 -18.78304 -17.48983 -17.25263 -17.17463 -16.81132 -16.41323 -15.95509 -15.72893 -15.39634 -15.33005 -15.24888 -14.90267 -14.65964 -14.16559 -13.97334 -13.83402 -13.75953 -13.39989 -13.24823 -13.06749 -12.84608 -12.79142 -12.68551 -12.53300 -12.48373 -12.22571 -12.09782 -11.86729 -11.77942 -11.76074 -11.40847 -11.16072 -11.09729 -10.64506 -10.57328 -10.10084 -9.37140 -9.16863 -9.07820 -8.05293 -6.22289 0.88663 0.94115 1.40482 1.44797 1.51617 2.31547 2.44215 2.63118 3.21730 3.34171 3.39877 3.76018 3.83201 3.95691 4.22316 4.30126 4.35509 4.36930 4.43075 4.50036 4.53835 4.62817 4.64226 4.70515 4.71744 4.80590 4.94546 4.97683 5.02659 5.07667 5.10116 5.11798 5.16504 5.17791 5.21849 5.27243 5.46377 5.46964 5.52104 5.55703 5.71220 5.89544 5.94181 5.98761 6.09348 6.43409 6.53841 6.75685 6.96351 7.02702 7.43797 7.92087 8.94049 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.005010 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.791726 B = 5587.000243 C = 6680.176867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.141 4.141 3 C 0.138 3.862 4 O -0.571 6.571 5 C -0.156 4.156 6 C 0.124 3.876 7 N -0.611 5.611 8 C 0.548 3.452 9 O -0.590 6.590 10 C 0.052 3.948 11 H 0.065 0.935 12 C -0.523 4.523 13 H 0.076 0.924 14 C 0.038 3.962 15 N -0.877 5.877 16 Si 0.936 3.064 17 H -0.282 1.282 18 H -0.297 1.297 19 H -0.256 1.256 20 C -0.036 4.036 21 C -0.086 4.086 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.119 4.119 26 C 0.122 3.878 27 C -0.110 4.110 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.384 0.616 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.253 0.747 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.129 0.871 43 H 0.097 0.903 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -11.270 -0.683 13.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.178 4.178 3 C 0.098 3.902 4 O -0.379 6.379 5 C -0.194 4.194 6 C 0.002 3.998 7 N -0.344 5.344 8 C 0.340 3.660 9 O -0.471 6.471 10 C 0.031 3.969 11 H 0.083 0.917 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.166 4.166 15 N -0.511 5.511 16 Si 0.762 3.238 17 H -0.208 1.208 18 H -0.224 1.224 19 H -0.179 1.179 20 C -0.036 4.036 21 C -0.104 4.104 22 C -0.170 4.170 23 C -0.160 4.160 24 C -0.165 4.165 25 C -0.137 4.137 26 C -0.001 4.001 27 C -0.148 4.148 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.064 0.936 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.115 0.885 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.727 -11.116 -0.503 13.003 hybrid contribution -0.564 0.995 1.004 1.522 sum -7.291 -10.121 0.501 12.484 Atomic orbital electron populations 1.21867 0.94248 1.02753 1.02533 1.22111 0.97606 0.95149 1.02974 1.21118 0.93463 0.91791 0.83838 1.86561 1.29360 1.81605 1.40379 1.22717 1.02150 0.95263 0.99249 1.21640 0.78818 0.96500 1.02861 1.47843 1.07432 1.49207 1.29938 1.21140 0.86741 0.75551 0.82614 1.90478 1.16483 1.64124 1.75992 1.17972 0.93199 0.94575 0.91152 0.91668 1.20830 0.94576 1.14564 1.26096 0.90565 1.25554 0.95352 0.98683 0.96967 1.70251 1.11758 1.35600 1.33515 0.85884 0.79647 0.78853 0.79393 1.20760 1.22359 1.17934 1.19952 0.95415 0.94501 0.93779 1.21130 0.99181 0.94425 0.95705 1.21319 0.95996 1.00009 0.99678 1.21175 0.98556 0.94439 1.01801 1.21183 0.99495 0.95800 0.99997 1.21023 0.95537 0.99581 0.97560 1.21180 0.96570 0.91939 0.90403 1.21855 0.94809 0.95311 1.02839 0.91979 0.91628 0.91664 0.91301 0.90726 0.76634 0.90777 0.87900 0.93571 0.88747 0.93789 0.86889 0.85560 0.84435 0.85340 0.88523 0.93839 0.92610 0.89807 0.90333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.21 71.98 0.66 -1.38 16 2 C -0.14 -2.39 5.23 30.59 0.16 -2.23 16 3 C 0.14 3.23 0.73 -10.76 -0.01 3.22 16 4 O -0.57 -14.34 11.69 -148.98 -1.74 -16.08 16 5 C -0.16 -3.78 4.64 30.67 0.14 -3.64 16 6 C 0.12 4.31 5.35 86.36 0.46 4.77 16 7 N -0.61 -25.67 2.97 -818.91 -2.43 -28.11 16 8 C 0.55 27.18 5.40 87.66 0.47 27.65 16 9 O -0.59 -33.47 13.37 -3.02 -0.04 -33.51 16 10 C 0.05 2.49 1.99 -13.04 -0.03 2.47 16 11 H 0.07 2.86 7.69 -2.38 -0.02 2.84 16 12 C -0.52 -25.24 4.98 25.60 0.13 -25.11 16 13 H 0.08 3.47 7.65 -2.91 -0.02 3.44 16 14 C 0.04 1.97 4.01 84.65 0.34 2.31 16 15 N -0.88 -49.98 10.90 21.45 0.23 -49.75 16 16 Si 0.94 41.25 29.54 68.60 2.03 43.28 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 C -0.04 -1.74 4.51 -19.87 -0.09 -1.83 16 21 C -0.09 -4.08 8.21 22.27 0.18 -3.90 16 22 C -0.15 -6.24 10.05 22.27 0.22 -6.02 16 23 C -0.14 -5.38 10.05 22.27 0.22 -5.15 16 24 C -0.15 -5.93 10.05 22.27 0.22 -5.71 16 25 C -0.12 -5.53 8.21 22.27 0.18 -5.35 16 26 C 0.12 4.75 6.19 86.36 0.53 5.28 16 27 C -0.11 -3.11 5.11 30.67 0.16 -2.95 16 28 H 0.06 0.72 6.89 -2.39 -0.02 0.70 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.82 6.31 -2.38 -0.02 0.81 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.38 6.75 7.53 -74.06 -0.56 6.19 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 1.90 6.27 -2.39 -0.01 1.89 16 36 H 0.05 1.70 7.81 -2.39 -0.02 1.68 16 37 H 0.09 3.43 4.85 -2.39 -0.01 3.42 16 38 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 39 H 0.11 5.55 6.04 -2.91 -0.02 5.53 16 40 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 41 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.10 4.57 7.02 -2.91 -0.02 4.55 16 44 H 0.04 1.79 7.81 -2.39 -0.02 1.77 16 45 H 0.06 2.42 7.01 -2.39 -0.02 2.41 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -67.70 357.89 2.43 -65.27 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: 0.42 Total: 36.47 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 3.97 Total: -17.57 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.20 Total: -77.85 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.78 Total: -49.59 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -67.70 2.43 -65.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362023482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.531 kcal (2) G-P(sol) polarization free energy of solvation -67.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds