Wall clock time and date at job start Tue Mar 31 2020 12:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46731 * 2 1 4 4 O 1.42901 * 109.52348 * 299.91516 * 3 2 1 5 5 C 1.53034 * 109.50105 * 59.99864 * 3 2 1 6 6 C 1.53038 * 109.53776 * 181.31703 * 5 3 2 7 7 C 1.53192 * 109.31174 * 298.63394 * 6 5 3 8 8 N 1.46917 * 108.77689 * 54.63785 * 7 6 5 9 9 C 1.34778 * 120.63471 * 126.36623 * 8 7 6 10 10 O 1.21278 * 119.99846 * 180.02562 * 9 8 7 11 11 C 1.50703 * 119.99585 * 0.02562 * 9 8 7 12 12 H 1.09002 * 109.47139 * 299.99507 * 11 9 8 13 13 C 1.50695 * 109.47429 * 59.99745 * 11 9 8 14 14 H 1.08004 * 119.99750 * 25.21363 * 13 11 9 15 15 C 1.37871 * 120.00056 * 205.21543 * 13 11 9 16 16 N 1.31513 * 120.00363 * 5.60428 * 15 13 11 17 17 Si 1.86804 * 120.00075 * 185.59908 * 15 13 11 18 18 H 1.48503 * 109.46854 * 90.00112 * 17 15 13 19 19 H 1.48499 * 109.47250 * 210.00292 * 17 15 13 20 20 H 1.48501 * 109.47341 * 330.00420 * 17 15 13 21 21 C 1.50702 * 109.46851 * 180.02562 * 11 9 8 22 22 C 1.38239 * 119.99794 * 293.49581 * 21 11 9 23 23 C 1.38233 * 120.00131 * 179.78966 * 22 21 11 24 24 C 1.38236 * 119.99629 * 0.44299 * 23 22 21 25 25 C 1.38234 * 120.00176 * 359.80706 * 24 23 22 26 26 C 1.38230 * 120.00398 * 113.77132 * 21 11 9 27 27 C 1.46929 * 118.73572 * 306.39119 * 8 7 6 28 28 H 1.09007 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47424 * 300.00063 * 1 2 3 30 30 H 1.09004 * 109.47569 * 60.00257 * 1 2 3 31 31 H 1.08998 * 109.46819 * 239.99972 * 2 1 3 32 32 H 1.09000 * 109.46871 * 119.99537 * 2 1 3 33 33 H 0.96703 * 114.00209 * 60.08430 * 4 3 2 34 34 H 1.09000 * 109.46119 * 61.29334 * 5 3 2 35 35 H 1.08999 * 109.46249 * 301.33832 * 5 3 2 36 36 H 1.08993 * 109.49958 * 58.58751 * 6 5 3 37 37 H 1.09005 * 109.49812 * 178.65299 * 6 5 3 38 38 H 1.09000 * 109.58455 * 174.42616 * 7 6 5 39 39 H 1.09001 * 109.58597 * 294.84309 * 7 6 5 40 40 H 0.97001 * 120.00367 * 180.02562 * 16 15 13 41 41 H 1.08006 * 119.99831 * 0.02562 * 22 21 11 42 42 H 1.08002 * 120.00150 * 180.27521 * 23 22 21 43 43 H 1.08000 * 119.99749 * 179.83427 * 24 23 22 44 44 H 1.08000 * 120.00054 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.99554 * 359.97438 * 26 21 11 46 46 H 1.09008 * 109.58695 * 173.39367 * 27 8 7 47 47 H 1.09004 * 109.58713 * 293.67611 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5658 2.1167 -1.1674 5 6 1.5301 2.1646 1.2493 6 6 2.0124 3.6169 1.2337 7 6 3.5440 3.6423 1.2517 8 7 4.0437 2.8286 0.1352 9 6 4.9179 3.3431 -0.7522 10 8 5.3226 2.6612 -1.6699 11 6 5.3925 4.7658 -0.6041 12 1 4.5382 5.4409 -0.6544 13 6 6.0841 4.9289 0.7248 14 1 6.5340 4.0740 1.2079 15 6 6.1426 6.1693 1.3238 16 7 5.5018 7.1872 0.7922 17 14 7.1321 6.4040 2.8908 18 1 8.5261 6.7808 2.5442 19 1 6.5170 7.4805 3.7081 20 1 7.1399 5.1373 3.6658 21 6 6.3561 5.0921 -1.7159 22 6 7.5823 4.4567 -1.7766 23 6 8.4644 4.7528 -2.7989 24 6 8.1240 5.6911 -3.7553 25 6 6.9000 6.3303 -3.6917 26 6 6.0162 6.0310 -2.6718 27 6 3.5718 1.4433 0.0041 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.6019 2.1564 -1.2345 34 1 1.9124 1.6645 2.1392 35 1 0.4404 2.1440 1.2614 36 1 1.6510 4.1106 0.3317 37 1 1.6291 4.1370 2.1116 38 1 3.8938 4.6687 1.1410 39 1 3.9052 3.2308 2.1942 40 1 5.5432 8.0600 1.2135 41 1 7.8495 3.7261 -1.0274 42 1 9.4205 4.2532 -2.8488 43 1 8.8143 5.9244 -4.5525 44 1 6.6339 7.0630 -4.4391 45 1 5.0598 6.5304 -2.6221 46 1 3.9399 1.0187 -0.9300 47 1 3.9374 0.8517 0.8435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363219700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:17 Heat of formation + Delta-G solvation = -89.894371 kcal Electronic energy + Delta-G solvation = -28100.007012 eV Core-core repulsion = 24439.189180 eV Total energy + Delta-G solvation = -3660.817833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41332 -40.09125 -39.00105 -36.57224 -35.49964 -33.89745 -32.86038 -32.83083 -31.54060 -30.62085 -28.88939 -26.67911 -25.56697 -24.53681 -23.21037 -22.96342 -22.14987 -20.99120 -19.76077 -18.68967 -17.81712 -17.55592 -17.43631 -16.80743 -16.45076 -16.17683 -15.74028 -15.60545 -15.38140 -15.27627 -15.09924 -14.56264 -14.12484 -14.00990 -13.86247 -13.74051 -13.60944 -13.29796 -13.23937 -13.16416 -12.85857 -12.77148 -12.61034 -12.44418 -12.15605 -12.14744 -11.99976 -11.85119 -11.72576 -11.58276 -11.33770 -11.25025 -10.67086 -10.63370 -10.28640 -9.56353 -9.37171 -9.25150 -8.17771 -6.26655 0.75439 0.80686 1.41965 1.45884 1.53043 1.96940 2.32744 2.44825 3.10636 3.23902 3.28629 3.78368 3.82971 3.90733 4.17469 4.19070 4.25564 4.28936 4.31621 4.39581 4.43946 4.52925 4.61276 4.67149 4.68173 4.71634 4.87216 4.89166 4.94027 4.96856 5.07134 5.08453 5.11877 5.14802 5.26788 5.30327 5.37315 5.44029 5.45286 5.49135 5.66249 5.77343 5.80311 5.91233 5.96170 6.24841 6.39944 6.65653 6.74686 6.93058 7.36842 7.53041 8.90336 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012504 B = 0.005152 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.707221 B = 5433.342413 C = 6859.473018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.142 4.142 3 C 0.123 3.877 4 O -0.572 6.572 5 C -0.136 4.136 6 C -0.127 4.127 7 C 0.107 3.893 8 N -0.597 5.597 9 C 0.525 3.475 10 O -0.600 6.600 11 C 0.062 3.938 12 H 0.057 0.943 13 C -0.507 4.507 14 H 0.050 0.950 15 C 0.040 3.960 16 N -0.901 5.901 17 Si 0.947 3.053 18 H -0.285 1.285 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.036 4.036 22 C -0.111 4.111 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.130 4.130 26 C -0.141 4.141 27 C 0.116 3.884 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.382 0.618 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.136 0.864 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.103 0.897 46 H 0.063 0.937 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 -8.710 1.609 12.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.082 3.918 4 O -0.380 6.380 5 C -0.173 4.173 6 C -0.165 4.165 7 C -0.015 4.015 8 N -0.328 5.328 9 C 0.316 3.684 10 O -0.482 6.482 11 C 0.041 3.959 12 H 0.075 0.925 13 C -0.545 4.545 14 H 0.068 0.932 15 C -0.162 4.162 16 N -0.538 5.538 17 Si 0.772 3.228 18 H -0.211 1.211 19 H -0.203 1.203 20 H -0.188 1.188 21 C -0.037 4.037 22 C -0.129 4.129 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.148 4.148 26 C -0.160 4.160 27 C -0.007 4.007 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.231 0.769 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.166 0.834 44 H 0.157 0.843 45 H 0.121 0.879 46 H 0.081 0.919 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.220 -8.806 1.080 12.094 hybrid contribution 0.079 0.370 0.869 0.948 sum -8.141 -8.436 1.949 11.884 Atomic orbital electron populations 1.21819 0.93663 1.02977 1.02510 1.22081 0.98053 0.94781 1.03121 1.21585 0.92366 0.92193 0.85627 1.86676 1.27309 1.79832 1.44226 1.22224 1.02229 0.95089 0.97778 1.21832 0.94467 0.97776 1.02416 1.21933 0.94179 0.97476 0.87952 1.47812 1.43945 1.13041 1.28004 1.21434 0.76969 0.90348 0.79643 1.90515 1.59439 1.63539 1.34733 1.17912 0.95097 0.88785 0.94080 0.92547 1.20583 1.36967 0.94620 1.02319 0.93170 1.25463 0.95418 0.95463 0.99871 1.70006 1.41242 1.01314 1.41245 0.85727 0.78818 0.78306 0.79932 1.21130 1.20289 1.18832 1.20150 0.95613 0.94220 0.93679 1.20843 0.94344 0.99481 0.98230 1.21326 0.99736 0.99159 0.95169 1.21264 0.97239 0.97743 0.99930 1.21291 0.94594 1.00603 0.98309 1.21102 1.00023 0.99125 0.95718 1.21658 0.93264 0.83441 1.02339 0.91338 0.91086 0.92449 0.92265 0.89628 0.76891 0.89684 0.88811 0.93020 0.89300 0.89043 0.91630 0.92406 0.88783 0.84620 0.83445 0.84287 0.87929 0.91857 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.26 71.98 0.67 -1.38 16 2 C -0.14 -2.64 5.21 30.60 0.16 -2.48 16 3 C 0.12 3.13 0.75 -10.72 -0.01 3.12 16 4 O -0.57 -16.98 12.13 -148.98 -1.81 -18.78 16 5 C -0.14 -2.89 4.57 30.62 0.14 -2.75 16 6 C -0.13 -3.56 5.94 30.67 0.18 -3.38 16 7 C 0.11 3.91 5.59 86.36 0.48 4.40 16 8 N -0.60 -24.38 2.91 -818.90 -2.39 -26.76 16 9 C 0.52 26.07 6.98 87.66 0.61 26.68 16 10 O -0.60 -32.71 14.85 -3.02 -0.04 -32.76 16 11 C 0.06 3.21 1.51 -13.03 -0.02 3.19 16 12 H 0.06 3.15 6.82 -2.39 -0.02 3.13 16 13 C -0.51 -26.20 5.28 25.60 0.14 -26.06 16 14 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 15 C 0.04 2.05 5.32 84.65 0.45 2.50 16 16 N -0.90 -48.35 12.92 21.44 0.28 -48.08 16 17 Si 0.95 41.08 29.54 68.60 2.03 43.10 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 C -0.04 -1.81 4.29 -19.87 -0.09 -1.90 16 22 C -0.11 -5.34 8.33 22.27 0.19 -5.16 16 23 C -0.14 -5.48 10.05 22.27 0.22 -5.25 16 24 C -0.14 -5.26 10.05 22.27 0.22 -5.04 16 25 C -0.13 -5.12 10.05 22.27 0.22 -4.89 16 26 C -0.14 -6.67 9.67 22.27 0.22 -6.45 16 27 C 0.12 3.90 5.39 86.36 0.47 4.37 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.80 6.40 -2.38 -0.02 0.79 16 30 H 0.06 0.76 6.79 -2.39 -0.02 0.74 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.38 7.90 7.35 -74.06 -0.54 7.36 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.49 6.36 -2.39 -0.02 1.48 16 36 H 0.05 1.65 7.61 -2.39 -0.02 1.63 16 37 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.09 4.06 4.86 -2.39 -0.01 4.04 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.09 4.69 7.88 -2.91 -0.02 4.67 16 42 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.10 4.83 7.96 -2.91 -0.02 4.81 16 46 H 0.06 2.50 7.01 -2.38 -0.02 2.48 16 47 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -68.34 368.23 2.74 -65.60 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: 0.42 Total: 38.18 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 4.25 Total: -20.49 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.11 Total: -74.84 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -1.85 Total: -51.54 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -68.34 2.74 -65.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363219700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.296 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds