Wall clock time and date at job start Tue Mar 31 2020 12:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46697 * 2 1 4 4 O 1.42893 * 109.50000 * 299.93275 * 3 2 1 5 5 C 1.53041 * 109.49641 * 60.00305 * 3 2 1 6 6 C 1.53040 * 109.53588 * 181.31525 * 5 3 2 7 7 C 1.53192 * 109.31509 * 298.62947 * 6 5 3 8 8 N 1.46931 * 108.77478 * 54.63297 * 7 6 5 9 9 C 1.34777 * 120.63123 * 126.41209 * 8 7 6 10 10 O 1.21279 * 119.99868 * 179.97438 * 9 8 7 11 11 C 1.50704 * 119.99611 * 359.97438 * 9 8 7 12 12 H 1.08998 * 109.47328 * 59.99811 * 11 9 8 13 13 C 1.50693 * 109.47160 * 299.99455 * 11 9 8 14 14 H 1.08004 * 119.99964 * 335.09757 * 13 11 9 15 15 C 1.37877 * 120.00322 * 155.09921 * 13 11 9 16 16 N 1.31511 * 120.00275 * 184.08773 * 15 13 11 17 17 Si 1.86797 * 119.99556 * 4.08478 * 15 13 11 18 18 H 1.48500 * 109.47530 * 84.81401 * 17 15 13 19 19 H 1.48505 * 109.47393 * 204.81530 * 17 15 13 20 20 H 1.48503 * 109.47633 * 324.81230 * 17 15 13 21 21 C 1.50704 * 109.46805 * 179.97438 * 11 9 8 22 22 C 1.38238 * 120.00077 * 66.17490 * 21 11 9 23 23 C 1.38233 * 119.99523 * 179.78552 * 22 21 11 24 24 C 1.38231 * 120.00463 * 0.47309 * 23 22 21 25 25 C 1.38235 * 119.99845 * 359.76159 * 24 23 22 26 26 C 1.38237 * 119.99653 * 246.45371 * 21 11 9 27 27 C 1.46926 * 118.73968 * 306.40005 * 8 7 6 28 28 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47456 * 300.00276 * 1 2 3 30 30 H 1.09002 * 109.46694 * 60.00321 * 1 2 3 31 31 H 1.08999 * 109.47326 * 240.00057 * 2 1 3 32 32 H 1.09002 * 109.46694 * 119.99679 * 2 1 3 33 33 H 0.96694 * 114.00277 * 60.06633 * 4 3 2 34 34 H 1.08994 * 109.46631 * 61.29067 * 5 3 2 35 35 H 1.09000 * 109.45976 * 301.32624 * 5 3 2 36 36 H 1.09009 * 109.49947 * 58.58006 * 6 5 3 37 37 H 1.08997 * 109.50257 * 178.67814 * 6 5 3 38 38 H 1.08997 * 109.59419 * 174.42333 * 7 6 5 39 39 H 1.08996 * 109.58610 * 294.85070 * 7 6 5 40 40 H 0.96998 * 119.99743 * 179.97438 * 16 15 13 41 41 H 1.07991 * 119.99691 * 0.02562 * 22 21 11 42 42 H 1.08006 * 119.99746 * 180.25445 * 23 22 21 43 43 H 1.07994 * 120.00124 * 179.79022 * 24 23 22 44 44 H 1.08004 * 119.99963 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.00313 * 359.97438 * 26 21 11 46 46 H 1.09003 * 109.58226 * 293.81520 * 27 8 7 47 47 H 1.09002 * 109.70442 * 173.46675 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5652 2.1163 -1.1673 5 6 1.5301 2.1645 1.2494 6 6 2.0124 3.6168 1.2339 7 6 3.5440 3.6423 1.2520 8 7 4.0438 2.8285 0.1354 9 6 4.9187 3.3428 -0.7514 10 8 5.3241 2.6606 -1.6686 11 6 5.3931 4.7656 -0.6034 12 1 5.8926 4.8838 0.3582 13 6 4.2121 5.6988 -0.6741 14 1 3.3144 5.3955 -1.1925 15 6 4.2773 6.9399 -0.0772 16 7 3.2202 7.7222 -0.0691 17 14 5.8674 7.5102 0.7203 18 1 6.7500 8.1129 -0.3107 19 1 5.5628 8.5219 1.7639 20 1 6.5536 6.3492 1.3420 21 6 6.3585 5.0912 -1.7138 22 6 5.9167 5.1359 -3.0229 23 6 6.8013 5.4390 -4.0409 24 6 8.1298 5.6878 -3.7510 25 6 8.5726 5.6384 -2.4425 26 6 7.6871 5.3397 -1.4239 27 6 3.5719 1.4433 0.0042 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.6014 2.1555 -1.2342 34 1 1.9123 1.6644 2.1393 35 1 0.4404 2.1440 1.2614 36 1 1.6510 4.1106 0.3318 37 1 1.6296 4.1368 2.1120 38 1 3.8939 4.6687 1.1414 39 1 3.9052 3.2307 2.1944 40 1 3.2661 8.5952 0.3512 41 1 4.8796 4.9378 -3.2498 42 1 6.4553 5.4779 -5.0633 43 1 8.8216 5.9213 -4.5468 44 1 9.6105 5.8333 -2.2159 45 1 8.0331 5.3008 -0.4016 46 1 3.9353 0.8523 0.8449 47 1 3.9401 1.0164 -0.9288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363219702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:26 Heat of formation + Delta-G solvation = -65.669295 kcal Electronic energy + Delta-G solvation = -28353.435416 eV Core-core repulsion = 24693.668061 eV Total energy + Delta-G solvation = -3659.767354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.99768 -38.73309 -37.53425 -35.09812 -33.67958 -32.80934 -31.50176 -31.46129 -30.07638 -29.42351 -27.53671 -25.24861 -23.92670 -23.04909 -21.81974 -21.63136 -20.75282 -19.76280 -18.17054 -17.09010 -16.36571 -16.31976 -16.01263 -15.31857 -15.02318 -14.60053 -14.46247 -14.32227 -14.05860 -13.77911 -13.64132 -13.00385 -12.72640 -12.61668 -12.59548 -12.45416 -12.26820 -12.12635 -11.97502 -11.73266 -11.67833 -11.33663 -11.11270 -11.00131 -10.95129 -10.65212 -10.53613 -10.42946 -10.16140 -10.05745 -9.87054 -9.50647 -9.46105 -8.86821 -8.57904 -8.07346 -7.87231 -7.74843 -6.26921 -4.27051 2.20561 2.27316 3.18953 3.26323 3.32718 3.61220 3.85202 4.25651 4.39241 4.68235 4.81816 4.85523 4.98219 5.03113 5.17951 5.34264 5.43493 5.58639 5.61009 5.65240 5.72209 5.77989 5.79335 5.80173 5.90763 5.93163 5.99558 6.00700 6.06787 6.16425 6.19194 6.33378 6.34848 6.38906 6.44354 6.54279 6.77373 6.79614 6.92036 6.93220 7.21610 7.29745 7.32352 7.35997 7.66154 7.86014 7.95443 8.20828 8.31405 8.76859 9.18271 9.29997 10.83216 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.005225 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.429575 B = 5357.093719 C = 6436.390666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C 0.121 3.879 4 O -0.539 6.539 5 C -0.145 4.145 6 C -0.123 4.123 7 C 0.098 3.902 8 N -0.599 5.599 9 C 0.543 3.457 10 O -0.562 6.562 11 C 0.021 3.979 12 H 0.067 0.933 13 C -0.501 4.501 14 H 0.086 0.914 15 C 0.086 3.914 16 N -0.881 5.881 17 Si 0.858 3.142 18 H -0.265 1.265 19 H -0.287 1.287 20 H -0.262 1.262 21 C -0.029 4.029 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.138 4.138 27 C 0.126 3.874 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.366 0.634 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.130 0.870 39 H 0.043 0.957 40 H 0.268 0.732 41 H 0.119 0.881 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.068 0.932 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.864 -10.072 3.432 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C 0.079 3.921 4 O -0.344 6.344 5 C -0.183 4.183 6 C -0.161 4.161 7 C -0.024 4.024 8 N -0.331 5.331 9 C 0.334 3.666 10 O -0.440 6.440 11 C -0.001 4.001 12 H 0.085 0.915 13 C -0.538 4.538 14 H 0.104 0.896 15 C -0.119 4.119 16 N -0.516 5.516 17 Si 0.685 3.315 18 H -0.190 1.190 19 H -0.213 1.213 20 H -0.187 1.187 21 C -0.031 4.031 22 C -0.087 4.087 23 C -0.148 4.148 24 C -0.161 4.161 25 C -0.148 4.148 26 C -0.157 4.157 27 C 0.002 3.998 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.212 0.788 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.148 0.852 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.086 0.914 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.079 -10.161 2.902 10.622 hybrid contribution 0.043 0.404 0.676 0.789 sum -1.036 -9.756 3.577 10.443 Atomic orbital electron populations 1.21828 0.95682 1.01859 1.02000 1.22160 0.96467 0.97353 1.02758 1.21557 0.94770 0.90001 0.85758 1.86732 1.25604 1.79226 1.42871 1.22284 1.00547 0.97766 0.97718 1.21711 0.96311 0.94805 1.03278 1.22090 0.93853 0.99527 0.86938 1.47735 1.44811 1.11735 1.28845 1.20917 0.76846 0.88943 0.79899 1.90573 1.58426 1.62295 1.32734 1.18581 0.95840 0.90915 0.94749 0.91525 1.20507 0.98170 0.98842 1.36273 0.89567 1.24903 0.95676 0.96053 0.95249 1.69855 1.28405 1.10059 1.43322 0.87135 0.84942 0.79311 0.80075 1.19028 1.21282 1.18706 1.20106 0.92689 0.94805 0.95451 1.20868 0.99371 0.96432 0.92036 1.21039 0.93742 1.01313 0.98719 1.20855 0.95835 1.03368 0.96052 1.20869 0.98658 1.02058 0.93224 1.20991 0.93533 1.02632 0.98511 1.21376 0.90743 0.84875 1.02786 0.92592 0.92211 0.92516 0.91149 0.91227 0.78759 0.91719 0.91826 0.89880 0.91663 0.85246 0.93861 0.92205 0.86341 0.87140 0.87369 0.87336 0.87443 0.91438 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.26 37.16 0.34 -1.06 16 2 C -0.15 -1.60 5.21 -26.73 -0.14 -1.74 16 3 C 0.12 1.68 0.75 -90.50 -0.07 1.61 16 4 O -0.54 -8.76 12.14 -35.23 -0.43 -9.19 16 5 C -0.15 -1.87 4.57 -26.69 -0.12 -1.99 16 6 C -0.12 -1.98 5.94 -26.61 -0.16 -2.14 16 7 C 0.10 1.76 5.88 -3.71 -0.02 1.74 16 8 N -0.60 -11.61 2.91 -172.76 -0.50 -12.12 16 9 C 0.54 12.36 6.98 -10.98 -0.08 12.29 16 10 O -0.56 -13.99 14.84 5.56 0.08 -13.91 16 11 C 0.02 0.48 1.10 -94.07 -0.10 0.37 16 12 H 0.07 1.52 5.25 -51.93 -0.27 1.25 16 13 C -0.50 -12.65 5.68 -34.44 -0.20 -12.85 16 14 H 0.09 2.45 8.05 -52.48 -0.42 2.03 16 15 C 0.09 2.23 5.25 -17.82 -0.09 2.13 16 16 N -0.88 -24.28 13.96 55.43 0.77 -23.50 16 17 Si 0.86 19.95 25.95 -169.99 -4.41 15.54 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.26 -5.69 6.14 56.52 0.35 -5.35 16 21 C -0.03 -0.68 3.59 -104.62 -0.38 -1.06 16 22 C -0.07 -1.57 8.32 -39.58 -0.33 -1.90 16 23 C -0.13 -2.56 10.05 -39.59 -0.40 -2.96 16 24 C -0.14 -2.61 10.05 -39.59 -0.40 -3.01 16 25 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 26 C -0.14 -2.92 8.57 -39.58 -0.34 -3.26 16 27 C 0.13 2.07 5.38 -3.71 -0.02 2.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.51 6.40 -51.93 -0.33 0.18 16 30 H 0.06 0.50 6.78 -51.93 -0.35 0.15 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.37 4.58 7.34 45.56 0.33 4.92 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.72 6.36 -51.93 -0.33 0.39 16 36 H 0.08 1.60 7.61 -51.92 -0.40 1.21 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.13 2.70 4.39 -51.93 -0.23 2.48 16 39 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.12 2.82 7.89 -52.49 -0.41 2.41 16 42 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 45 H 0.11 2.11 7.94 -52.49 -0.42 1.69 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.09 1.71 7.01 -51.93 -0.36 1.34 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -30.44 361.28 -8.54 -38.98 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -6.61 Total: 13.37 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -2.89 Total: -14.61 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.27 Total: -35.62 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.35 Total: -23.10 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.41 Total: 15.54 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.44 -8.54 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363219702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.689 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds