Wall clock time and date at job start Tue Mar 31 2020 12:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46697 * 2 1 4 4 O 1.42893 * 109.50000 * 299.93275 * 3 2 1 5 5 C 1.53041 * 109.49641 * 60.00305 * 3 2 1 6 6 C 1.53040 * 109.53588 * 181.31525 * 5 3 2 7 7 C 1.53192 * 109.31509 * 298.62947 * 6 5 3 8 8 N 1.46931 * 108.77478 * 54.63297 * 7 6 5 9 9 C 1.34777 * 120.63123 * 126.41209 * 8 7 6 10 10 O 1.21279 * 119.99868 * 179.97438 * 9 8 7 11 11 C 1.50704 * 119.99611 * 359.97438 * 9 8 7 12 12 H 1.08998 * 109.47328 * 59.99811 * 11 9 8 13 13 C 1.50693 * 109.47160 * 299.99455 * 11 9 8 14 14 H 1.08004 * 119.99964 * 335.09757 * 13 11 9 15 15 C 1.37877 * 120.00322 * 155.09921 * 13 11 9 16 16 N 1.31511 * 120.00275 * 184.08773 * 15 13 11 17 17 Si 1.86797 * 119.99556 * 4.08478 * 15 13 11 18 18 H 1.48500 * 109.47530 * 84.81401 * 17 15 13 19 19 H 1.48505 * 109.47393 * 204.81530 * 17 15 13 20 20 H 1.48503 * 109.47633 * 324.81230 * 17 15 13 21 21 C 1.50704 * 109.46805 * 179.97438 * 11 9 8 22 22 C 1.38238 * 120.00077 * 66.17490 * 21 11 9 23 23 C 1.38233 * 119.99523 * 179.78552 * 22 21 11 24 24 C 1.38231 * 120.00463 * 0.47309 * 23 22 21 25 25 C 1.38235 * 119.99845 * 359.76159 * 24 23 22 26 26 C 1.38237 * 119.99653 * 246.45371 * 21 11 9 27 27 C 1.46926 * 118.73968 * 306.40005 * 8 7 6 28 28 H 1.09004 * 109.46740 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47456 * 300.00276 * 1 2 3 30 30 H 1.09002 * 109.46694 * 60.00321 * 1 2 3 31 31 H 1.08999 * 109.47326 * 240.00057 * 2 1 3 32 32 H 1.09002 * 109.46694 * 119.99679 * 2 1 3 33 33 H 0.96694 * 114.00277 * 60.06633 * 4 3 2 34 34 H 1.08994 * 109.46631 * 61.29067 * 5 3 2 35 35 H 1.09000 * 109.45976 * 301.32624 * 5 3 2 36 36 H 1.09009 * 109.49947 * 58.58006 * 6 5 3 37 37 H 1.08997 * 109.50257 * 178.67814 * 6 5 3 38 38 H 1.08997 * 109.59419 * 174.42333 * 7 6 5 39 39 H 1.08996 * 109.58610 * 294.85070 * 7 6 5 40 40 H 0.96998 * 119.99743 * 179.97438 * 16 15 13 41 41 H 1.07991 * 119.99691 * 0.02562 * 22 21 11 42 42 H 1.08006 * 119.99746 * 180.25445 * 23 22 21 43 43 H 1.07994 * 120.00124 * 179.79022 * 24 23 22 44 44 H 1.08004 * 119.99963 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.00313 * 359.97438 * 26 21 11 46 46 H 1.09003 * 109.58226 * 293.81520 * 27 8 7 47 47 H 1.09002 * 109.70442 * 173.46675 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5652 2.1163 -1.1673 5 6 1.5301 2.1645 1.2494 6 6 2.0124 3.6168 1.2339 7 6 3.5440 3.6423 1.2520 8 7 4.0438 2.8285 0.1354 9 6 4.9187 3.3428 -0.7514 10 8 5.3241 2.6606 -1.6686 11 6 5.3931 4.7656 -0.6034 12 1 5.8926 4.8838 0.3582 13 6 4.2121 5.6988 -0.6741 14 1 3.3144 5.3955 -1.1925 15 6 4.2773 6.9399 -0.0772 16 7 3.2202 7.7222 -0.0691 17 14 5.8674 7.5102 0.7203 18 1 6.7500 8.1129 -0.3107 19 1 5.5628 8.5219 1.7639 20 1 6.5536 6.3492 1.3420 21 6 6.3585 5.0912 -1.7138 22 6 5.9167 5.1359 -3.0229 23 6 6.8013 5.4390 -4.0409 24 6 8.1298 5.6878 -3.7510 25 6 8.5726 5.6384 -2.4425 26 6 7.6871 5.3397 -1.4239 27 6 3.5719 1.4433 0.0042 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 0.6014 2.1555 -1.2342 34 1 1.9123 1.6644 2.1393 35 1 0.4404 2.1440 1.2614 36 1 1.6510 4.1106 0.3318 37 1 1.6296 4.1368 2.1120 38 1 3.8939 4.6687 1.1414 39 1 3.9052 3.2307 2.1944 40 1 3.2661 8.5952 0.3512 41 1 4.8796 4.9378 -3.2498 42 1 6.4553 5.4779 -5.0633 43 1 8.8216 5.9213 -4.5468 44 1 9.6105 5.8333 -2.2159 45 1 8.0331 5.3008 -0.4016 46 1 3.9353 0.8523 0.8449 47 1 3.9401 1.0164 -0.9288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363219702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:24 Heat of formation + Delta-G solvation = -85.369258 kcal Electronic energy + Delta-G solvation = -28354.289670 eV Core-core repulsion = 24693.668061 eV Total energy + Delta-G solvation = -3660.621609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.49566 -40.18588 -39.07133 -36.61249 -35.50975 -33.90783 -33.30955 -32.83227 -31.65267 -30.68082 -29.15051 -26.70812 -25.37845 -24.50255 -23.39660 -22.99734 -22.20886 -20.98172 -19.77493 -19.04757 -18.03764 -17.58272 -17.48072 -16.81168 -16.56180 -16.05079 -16.00075 -15.53803 -15.35412 -15.28208 -15.08030 -14.74226 -14.36517 -14.22969 -14.04739 -13.69355 -13.64355 -13.51874 -13.39051 -13.15823 -12.98766 -12.72701 -12.60616 -12.39859 -12.12852 -12.07342 -11.98495 -11.85501 -11.70420 -11.57281 -11.44663 -11.29165 -10.83414 -10.66415 -10.38268 -9.66473 -9.40977 -9.36834 -8.30509 -6.32920 0.61685 0.68373 1.31893 1.40224 1.42972 1.86281 2.31129 2.31897 2.98879 3.11637 3.27962 3.78296 3.84652 3.90972 4.05960 4.16163 4.19559 4.20570 4.30136 4.32556 4.36915 4.39504 4.58684 4.61163 4.65230 4.67866 4.70985 4.79187 4.87851 4.89675 4.93928 5.03766 5.08565 5.13965 5.18880 5.26572 5.29062 5.30691 5.41103 5.48505 5.56837 5.66717 5.71508 5.85112 5.95753 6.23571 6.29266 6.59102 6.65500 6.91236 7.25287 7.44683 8.83331 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014816 B = 0.005225 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.429575 B = 5357.093719 C = 6436.390666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.119 3.881 4 O -0.574 6.574 5 C -0.135 4.135 6 C -0.118 4.118 7 C 0.093 3.907 8 N -0.596 5.596 9 C 0.532 3.468 10 O -0.593 6.593 11 C 0.026 3.974 12 H 0.072 0.928 13 C -0.479 4.479 14 H 0.036 0.964 15 C 0.044 3.956 16 N -0.924 5.924 17 Si 0.910 3.090 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.237 1.237 21 C -0.057 4.057 22 C -0.102 4.102 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.125 4.125 26 C -0.155 4.155 27 C 0.117 3.883 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.379 0.621 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.269 0.731 41 H 0.085 0.915 42 H 0.134 0.866 43 H 0.152 0.848 44 H 0.150 0.850 45 H 0.121 0.879 46 H 0.102 0.898 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 -11.267 4.962 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.078 3.922 4 O -0.382 6.382 5 C -0.172 4.172 6 C -0.157 4.157 7 C -0.029 4.029 8 N -0.327 5.327 9 C 0.323 3.677 10 O -0.475 6.475 11 C 0.004 3.996 12 H 0.090 0.910 13 C -0.517 4.517 14 H 0.054 0.946 15 C -0.157 4.157 16 N -0.562 5.562 17 Si 0.734 3.266 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.160 1.160 21 C -0.058 4.058 22 C -0.120 4.120 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.173 4.173 27 C -0.006 4.006 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.139 0.861 46 H 0.120 0.880 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.577 -11.387 4.462 12.243 hybrid contribution -0.508 0.728 0.101 0.893 sum 0.069 -10.659 4.563 11.595 Atomic orbital electron populations 1.21822 0.94081 1.02931 1.02280 1.22076 0.97758 0.94671 1.03314 1.21674 0.92911 0.92133 0.85482 1.86700 1.27035 1.80031 1.44423 1.22233 1.01927 0.95007 0.98055 1.21620 0.94970 0.97309 1.01757 1.22142 0.95170 0.97858 0.87715 1.47817 1.43526 1.13086 1.28224 1.20936 0.77686 0.88860 0.80252 1.90534 1.59992 1.62906 1.34043 1.18474 0.95077 0.90689 0.95322 0.91018 1.20222 0.97316 0.99319 1.34825 0.94566 1.25480 0.98343 0.95951 0.95891 1.69976 1.30474 1.10623 1.45168 0.86302 0.81437 0.79634 0.79213 1.19718 1.20818 1.16030 1.20143 0.93924 0.96530 0.95208 1.20802 0.98613 0.99143 0.93441 1.21356 0.94375 1.00397 0.99064 1.21349 0.95477 1.01270 0.97273 1.21376 1.00205 0.99956 0.92761 1.21254 0.92942 1.02968 1.00118 1.21702 0.92889 0.83184 1.02788 0.91122 0.91242 0.92960 0.92203 0.89079 0.77256 0.88951 0.89621 0.94287 0.90167 0.88573 0.90243 0.92186 0.89711 0.84853 0.83059 0.83263 0.86127 0.88027 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.26 71.98 0.67 -1.70 16 2 C -0.14 -2.72 5.21 30.60 0.16 -2.56 16 3 C 0.12 3.21 0.75 -10.71 -0.01 3.20 16 4 O -0.57 -19.50 12.14 -148.98 -1.81 -21.30 16 5 C -0.13 -3.17 4.57 30.62 0.14 -3.03 16 6 C -0.12 -3.83 5.94 30.67 0.18 -3.64 16 7 C 0.09 3.35 5.88 86.36 0.51 3.86 16 8 N -0.60 -23.67 2.91 -818.89 -2.39 -26.06 16 9 C 0.53 25.41 6.98 87.66 0.61 26.02 16 10 O -0.59 -31.16 14.84 -3.03 -0.04 -31.21 16 11 C 0.03 1.24 1.10 -13.03 -0.01 1.23 16 12 H 0.07 3.30 5.25 -2.39 -0.01 3.29 16 13 C -0.48 -25.81 5.68 25.60 0.15 -25.66 16 14 H 0.04 2.27 8.05 -2.91 -0.02 2.24 16 15 C 0.04 2.37 5.25 84.66 0.44 2.81 16 16 N -0.92 -53.48 13.96 21.45 0.30 -53.18 16 17 Si 0.91 41.38 25.95 68.60 1.78 43.16 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.24 -9.68 6.14 99.48 0.61 -9.07 16 21 C -0.06 -2.69 3.59 -19.86 -0.07 -2.76 16 22 C -0.10 -4.83 8.32 22.27 0.19 -4.64 16 23 C -0.13 -5.21 10.05 22.27 0.22 -4.99 16 24 C -0.14 -4.54 10.05 22.27 0.22 -4.32 16 25 C -0.13 -4.30 10.05 22.27 0.22 -4.07 16 26 C -0.15 -6.32 8.57 22.27 0.19 -6.13 16 27 C 0.12 3.83 5.38 86.36 0.46 4.29 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 0.95 6.40 -2.39 -0.02 0.93 16 30 H 0.05 0.85 6.78 -2.39 -0.02 0.83 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.38 9.90 7.34 -74.06 -0.54 9.36 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.09 1.68 6.36 -2.39 -0.02 1.67 16 36 H 0.04 1.60 7.61 -2.38 -0.02 1.58 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.10 4.16 4.39 -2.39 -0.01 4.15 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.08 4.45 7.89 -2.92 -0.02 4.43 16 42 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 44 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 45 H 0.12 4.48 7.94 -2.91 -0.02 4.46 16 46 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 47 H 0.06 2.48 7.01 -2.39 -0.02 2.46 16 Total: -1.00 -72.28 361.28 2.45 -69.83 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: 0.33 Total: 40.85 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 4.28 Total: -22.10 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -2.09 Total: -79.24 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.85 Total: -52.51 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.78 Total: 43.16 kcal Total: -72.28 2.45 -69.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363219702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.537 kcal (2) G-P(sol) polarization free energy of solvation -72.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds