Wall clock time and date at job start Tue Mar 31 2020 12:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46877 * 2 1 4 4 O 1.42898 * 109.52281 * 64.92155 * 3 2 1 5 5 C 1.53037 * 109.49943 * 304.83868 * 3 2 1 6 6 C 1.53043 * 109.53912 * 178.68136 * 5 3 2 7 7 C 1.52765 * 109.37876 * 61.24183 * 6 5 3 8 8 N 1.46920 * 109.01128 * 305.59112 * 7 6 5 9 9 C 1.34782 * 120.62826 * 233.58486 * 8 7 6 10 10 O 1.21281 * 119.99936 * 179.71725 * 9 8 7 11 11 C 1.50704 * 119.99843 * 359.72079 * 9 8 7 12 12 H 1.08996 * 109.46889 * 324.51158 * 11 9 8 13 13 C 1.50700 * 109.47250 * 84.51707 * 11 9 8 14 14 H 1.08001 * 119.99765 * 33.81001 * 13 11 9 15 15 C 1.37870 * 119.99895 * 213.80776 * 13 11 9 16 16 N 1.31515 * 120.00246 * 185.78583 * 15 13 11 17 17 Si 1.86801 * 120.00051 * 5.78507 * 15 13 11 18 18 H 1.48499 * 109.47144 * 84.90494 * 17 15 13 19 19 H 1.48507 * 109.47234 * 204.90456 * 17 15 13 20 20 H 1.48500 * 109.47271 * 324.90174 * 17 15 13 21 21 C 1.50698 * 109.46713 * 204.51604 * 11 9 8 22 22 C 1.38237 * 120.00187 * 112.98969 * 21 11 9 23 23 C 1.38230 * 120.00338 * 179.97438 * 22 21 11 24 24 C 1.38233 * 119.99912 * 359.97438 * 23 22 21 25 25 C 1.38241 * 120.00128 * 0.07421 * 24 23 22 26 26 C 1.38232 * 119.99837 * 359.90145 * 25 24 23 27 27 C 1.46918 * 118.74066 * 53.30675 * 8 7 6 28 28 H 1.08994 * 109.47141 * 299.99614 * 1 2 3 29 29 H 1.09000 * 109.47647 * 59.99859 * 1 2 3 30 30 H 1.09007 * 109.46845 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46795 * 240.00701 * 2 1 3 32 32 H 1.08994 * 109.47317 * 120.00436 * 2 1 3 33 33 H 0.96690 * 114.00132 * 300.08199 * 4 3 2 34 34 H 1.09004 * 109.46651 * 298.70568 * 5 3 2 35 35 H 1.09005 * 109.46222 * 58.67693 * 5 3 2 36 36 H 1.09001 * 109.50047 * 181.31942 * 6 5 3 37 37 H 1.08997 * 109.49605 * 301.38732 * 6 5 3 38 38 H 1.09004 * 109.50540 * 185.70530 * 7 6 5 39 39 H 1.09004 * 109.43243 * 65.42871 * 7 6 5 40 40 H 0.96996 * 120.00583 * 179.97438 * 16 15 13 41 41 H 1.08005 * 119.99633 * 359.97438 * 22 21 11 42 42 H 1.08002 * 120.00175 * 179.72336 * 23 22 21 43 43 H 1.07998 * 120.00010 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.99665 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00072 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.58633 * 66.43540 * 27 8 7 47 47 H 1.09001 * 109.58956 * 186.86071 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6609 2.0830 1.2199 5 6 1.4332 2.1988 -1.1840 6 6 1.9168 3.6507 -1.1660 7 6 3.4382 3.6799 -1.3015 8 7 4.0282 2.8339 -0.2553 9 6 4.9709 3.3243 0.5739 10 8 5.4466 2.6174 1.4369 11 6 5.4337 4.7512 0.4286 12 1 5.4433 5.0243 -0.6266 13 6 4.4940 5.6626 1.1750 14 1 4.0239 5.3242 2.0865 15 6 4.2346 6.9285 0.6943 16 7 3.5063 7.7642 1.4020 17 14 4.9175 7.4567 -0.9622 18 1 3.9993 7.0112 -2.0409 19 1 5.0417 8.9362 -0.9975 20 1 6.2544 6.8428 -1.1650 21 6 6.8232 4.8886 0.9957 22 6 7.8871 5.1671 0.1582 23 6 9.1615 5.2938 0.6784 24 6 9.3720 5.1425 2.0362 25 6 8.3082 4.8630 2.8737 26 6 7.0337 4.7368 2.3535 27 6 3.5667 1.4451 -0.1260 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.7056 2.1175 1.3656 34 1 1.7429 1.7244 -2.1153 35 1 0.3459 2.1776 -1.1098 36 1 1.4659 4.1947 -1.9960 37 1 1.6284 4.1186 -0.2248 38 1 3.7941 4.7039 -1.1876 39 1 3.7223 3.2992 -2.2827 40 1 3.3240 8.6549 1.0641 41 1 7.7226 5.2858 -0.9026 42 1 9.9935 5.5069 0.0235 43 1 10.3677 5.2410 2.4426 44 1 8.4727 4.7444 3.9344 45 1 6.2025 4.5189 3.0078 46 1 3.8615 0.8784 -1.0092 47 1 4.0074 0.9949 0.7635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363219704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:34 Heat of formation + Delta-G solvation = -66.101099 kcal Electronic energy + Delta-G solvation = -28246.190515 eV Core-core repulsion = 24586.404436 eV Total energy + Delta-G solvation = -3659.786079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -40.06414 -38.74771 -37.54772 -35.18558 -33.60901 -32.91374 -31.63659 -31.47129 -30.05432 -29.46071 -27.59391 -25.36808 -24.07564 -22.99965 -21.87159 -21.73797 -20.76287 -19.79884 -18.26419 -17.08112 -16.44966 -16.39152 -16.02696 -15.41509 -15.12399 -14.62527 -14.51825 -14.28615 -14.15051 -13.85165 -13.66363 -13.05455 -12.74886 -12.72307 -12.68479 -12.51444 -12.33083 -12.24399 -11.95648 -11.76688 -11.64855 -11.41189 -11.15114 -11.06242 -10.98256 -10.71953 -10.68279 -10.43617 -10.20512 -10.12853 -9.90302 -9.58239 -9.50243 -8.75659 -8.65777 -8.04913 -7.99040 -7.74129 -6.23495 -4.24846 2.21112 2.28971 3.11956 3.25114 3.26967 3.56990 3.76879 4.25349 4.34001 4.68333 4.75105 4.78651 4.92025 5.08145 5.10322 5.24280 5.30054 5.48743 5.59357 5.61526 5.64882 5.69117 5.71795 5.78170 5.82136 5.82659 5.89607 5.95258 6.04652 6.07289 6.10396 6.18692 6.26470 6.29804 6.41374 6.43080 6.50867 6.70410 6.80843 6.93952 7.15924 7.23743 7.35292 7.36172 7.69145 7.87535 7.92231 8.12186 8.35258 8.82015 9.14442 9.33830 10.88098 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.005211 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.181387 B = 5371.484002 C = 6421.130603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C 0.119 3.881 4 O -0.537 6.537 5 C -0.144 4.144 6 C -0.131 4.131 7 C 0.110 3.890 8 N -0.606 5.606 9 C 0.543 3.457 10 O -0.555 6.555 11 C 0.034 3.966 12 H 0.057 0.943 13 C -0.498 4.498 14 H 0.083 0.917 15 C 0.085 3.915 16 N -0.882 5.882 17 Si 0.853 3.147 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.253 1.253 21 C -0.037 4.037 22 C -0.134 4.134 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.133 4.133 26 C -0.063 4.063 27 C 0.127 3.873 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.366 0.634 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.267 0.733 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -10.711 -7.383 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C 0.077 3.923 4 O -0.342 6.342 5 C -0.182 4.182 6 C -0.169 4.169 7 C -0.014 4.014 8 N -0.339 5.339 9 C 0.334 3.666 10 O -0.433 6.433 11 C 0.012 3.988 12 H 0.074 0.926 13 C -0.536 4.536 14 H 0.101 0.899 15 C -0.119 4.119 16 N -0.518 5.518 17 Si 0.679 3.321 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.177 1.177 21 C -0.038 4.038 22 C -0.152 4.152 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.152 4.152 26 C -0.081 4.081 27 C 0.003 3.997 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.213 0.787 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.140 0.860 46 H 0.087 0.913 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.810 -10.811 -6.846 12.924 hybrid contribution -0.518 0.493 -1.042 1.264 sum -2.328 -10.318 -7.889 13.195 Atomic orbital electron populations 1.21844 0.95661 1.01871 1.01995 1.22162 0.96447 0.97214 1.02926 1.21574 0.95306 0.90389 0.84995 1.86768 1.27265 1.80826 1.39343 1.22268 1.00479 0.96986 0.98454 1.21734 0.95795 0.95775 1.03637 1.21630 0.93414 0.96864 0.89445 1.47825 1.40528 1.11188 1.34385 1.21132 0.77103 0.89272 0.79084 1.90558 1.57685 1.60709 1.34301 1.18402 0.91701 0.90650 0.98013 0.92559 1.20448 1.25232 0.97148 1.10767 0.89925 1.24933 0.94166 0.95860 0.96910 1.69859 1.37803 1.06783 1.37335 0.87236 0.81057 0.78787 0.85055 1.19565 1.20981 1.17696 1.20149 0.94595 0.95136 0.93894 1.21033 0.92721 1.02415 0.99050 1.20861 0.96432 1.02671 0.95247 1.20867 0.98142 1.03168 0.93846 1.21062 0.93347 1.01763 0.98983 1.20941 0.96134 0.95836 0.95210 1.21393 0.91126 0.84585 1.02577 0.92566 0.92180 0.92580 0.91169 0.90978 0.78742 0.91503 0.91459 0.91448 0.89680 0.88390 0.92911 0.92238 0.87311 0.87385 0.87419 0.87145 0.86015 0.91293 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.22 37.16 0.34 -0.99 16 2 C -0.15 -1.54 5.23 -26.73 -0.14 -1.68 16 3 C 0.12 1.60 0.76 -90.50 -0.07 1.53 16 4 O -0.54 -8.65 12.17 -35.23 -0.43 -9.08 16 5 C -0.14 -1.73 4.45 -26.69 -0.12 -1.85 16 6 C -0.13 -1.98 5.93 -26.83 -0.16 -2.13 16 7 C 0.11 1.87 6.17 -3.93 -0.02 1.85 16 8 N -0.61 -11.57 2.92 -173.03 -0.51 -12.08 16 9 C 0.54 12.43 6.78 -10.98 -0.07 12.36 16 10 O -0.55 -13.94 14.57 5.56 0.08 -13.86 16 11 C 0.03 0.80 1.10 -94.07 -0.10 0.69 16 12 H 0.06 1.26 3.65 -51.93 -0.19 1.07 16 13 C -0.50 -13.31 7.71 -34.44 -0.27 -13.57 16 14 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 15 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 16 N -0.88 -25.42 13.96 55.43 0.77 -24.65 16 17 Si 0.85 19.56 25.86 -169.99 -4.40 15.16 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.25 -5.54 5.39 56.52 0.30 -5.23 16 21 C -0.04 -0.85 4.56 -104.62 -0.48 -1.33 16 22 C -0.13 -2.79 9.02 -39.58 -0.36 -3.14 16 23 C -0.13 -2.47 10.05 -39.59 -0.40 -2.87 16 24 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 25 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 26 C -0.06 -1.45 8.03 -39.58 -0.32 -1.77 16 27 C 0.13 2.04 5.39 -3.71 -0.02 2.02 16 28 H 0.06 0.47 6.89 -51.93 -0.36 0.11 16 29 H 0.06 0.48 6.32 -51.93 -0.33 0.15 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.37 4.49 7.53 45.56 0.34 4.83 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.70 6.27 -51.93 -0.33 0.37 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.54 7.61 -51.93 -0.40 1.14 16 38 H 0.10 1.92 4.06 -51.93 -0.21 1.71 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.11 2.10 7.26 -52.48 -0.38 1.72 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 45 H 0.12 2.98 7.67 -52.49 -0.40 2.58 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.09 1.74 7.01 -51.93 -0.36 1.37 16 LS Contribution 360.81 15.07 5.44 5.44 Total: -1.00 -31.92 360.81 -8.60 -40.52 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -6.49 Total: 13.22 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.07 Total: -14.68 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.27 Total: -36.73 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.35 Total: -22.93 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.40 Total: 15.16 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.92 -8.60 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363219704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.579 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds