Wall clock time and date at job start Tue Mar 31 2020 12:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46877 * 2 1 4 4 O 1.42898 * 109.52281 * 64.92155 * 3 2 1 5 5 C 1.53037 * 109.49943 * 304.83868 * 3 2 1 6 6 C 1.53043 * 109.53912 * 178.68136 * 5 3 2 7 7 C 1.52765 * 109.37876 * 61.24183 * 6 5 3 8 8 N 1.46920 * 109.01128 * 305.59112 * 7 6 5 9 9 C 1.34782 * 120.62826 * 233.58486 * 8 7 6 10 10 O 1.21281 * 119.99936 * 179.71725 * 9 8 7 11 11 C 1.50704 * 119.99843 * 359.72079 * 9 8 7 12 12 H 1.08996 * 109.46889 * 324.51158 * 11 9 8 13 13 C 1.50700 * 109.47250 * 84.51707 * 11 9 8 14 14 H 1.08001 * 119.99765 * 33.81001 * 13 11 9 15 15 C 1.37870 * 119.99895 * 213.80776 * 13 11 9 16 16 N 1.31515 * 120.00246 * 185.78583 * 15 13 11 17 17 Si 1.86801 * 120.00051 * 5.78507 * 15 13 11 18 18 H 1.48499 * 109.47144 * 84.90494 * 17 15 13 19 19 H 1.48507 * 109.47234 * 204.90456 * 17 15 13 20 20 H 1.48500 * 109.47271 * 324.90174 * 17 15 13 21 21 C 1.50698 * 109.46713 * 204.51604 * 11 9 8 22 22 C 1.38237 * 120.00187 * 112.98969 * 21 11 9 23 23 C 1.38230 * 120.00338 * 179.97438 * 22 21 11 24 24 C 1.38233 * 119.99912 * 359.97438 * 23 22 21 25 25 C 1.38241 * 120.00128 * 0.07421 * 24 23 22 26 26 C 1.38232 * 119.99837 * 359.90145 * 25 24 23 27 27 C 1.46918 * 118.74066 * 53.30675 * 8 7 6 28 28 H 1.08994 * 109.47141 * 299.99614 * 1 2 3 29 29 H 1.09000 * 109.47647 * 59.99859 * 1 2 3 30 30 H 1.09007 * 109.46845 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46795 * 240.00701 * 2 1 3 32 32 H 1.08994 * 109.47317 * 120.00436 * 2 1 3 33 33 H 0.96690 * 114.00132 * 300.08199 * 4 3 2 34 34 H 1.09004 * 109.46651 * 298.70568 * 5 3 2 35 35 H 1.09005 * 109.46222 * 58.67693 * 5 3 2 36 36 H 1.09001 * 109.50047 * 181.31942 * 6 5 3 37 37 H 1.08997 * 109.49605 * 301.38732 * 6 5 3 38 38 H 1.09004 * 109.50540 * 185.70530 * 7 6 5 39 39 H 1.09004 * 109.43243 * 65.42871 * 7 6 5 40 40 H 0.96996 * 120.00583 * 179.97438 * 16 15 13 41 41 H 1.08005 * 119.99633 * 359.97438 * 22 21 11 42 42 H 1.08002 * 120.00175 * 179.72336 * 23 22 21 43 43 H 1.07998 * 120.00010 * 179.97438 * 24 23 22 44 44 H 1.07997 * 119.99665 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00072 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.58633 * 66.43540 * 27 8 7 47 47 H 1.09001 * 109.58956 * 186.86071 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 1.6609 2.0830 1.2199 5 6 1.4332 2.1988 -1.1840 6 6 1.9168 3.6507 -1.1660 7 6 3.4382 3.6799 -1.3015 8 7 4.0282 2.8339 -0.2553 9 6 4.9709 3.3243 0.5739 10 8 5.4466 2.6174 1.4369 11 6 5.4337 4.7512 0.4286 12 1 5.4433 5.0243 -0.6266 13 6 4.4940 5.6626 1.1750 14 1 4.0239 5.3242 2.0865 15 6 4.2346 6.9285 0.6943 16 7 3.5063 7.7642 1.4020 17 14 4.9175 7.4567 -0.9622 18 1 3.9993 7.0112 -2.0409 19 1 5.0417 8.9362 -0.9975 20 1 6.2544 6.8428 -1.1650 21 6 6.8232 4.8886 0.9957 22 6 7.8871 5.1671 0.1582 23 6 9.1615 5.2938 0.6784 24 6 9.3720 5.1425 2.0362 25 6 8.3082 4.8630 2.8737 26 6 7.0337 4.7368 2.3535 27 6 3.5667 1.4451 -0.1260 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 0.7056 2.1175 1.3656 34 1 1.7429 1.7244 -2.1153 35 1 0.3459 2.1776 -1.1098 36 1 1.4659 4.1947 -1.9960 37 1 1.6284 4.1186 -0.2248 38 1 3.7941 4.7039 -1.1876 39 1 3.7223 3.2992 -2.2827 40 1 3.3240 8.6549 1.0641 41 1 7.7226 5.2858 -0.9026 42 1 9.9935 5.5069 0.0235 43 1 10.3677 5.2410 2.4426 44 1 8.4727 4.7444 3.9344 45 1 6.2025 4.5189 3.0078 46 1 3.8615 0.8784 -1.0092 47 1 4.0074 0.9949 0.7635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363219704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:32 Heat of formation + Delta-G solvation = -87.891348 kcal Electronic energy + Delta-G solvation = -28247.135411 eV Core-core repulsion = 24586.404436 eV Total energy + Delta-G solvation = -3660.730975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51507 -40.19509 -39.07837 -36.63416 -35.50385 -33.98816 -33.35047 -32.90032 -31.63072 -30.66066 -29.24618 -26.73399 -25.55539 -24.44517 -23.38267 -23.08108 -22.21609 -20.97539 -19.86285 -19.05089 -18.15190 -17.61291 -17.46993 -16.86927 -16.63183 -16.11235 -15.84496 -15.55215 -15.45164 -15.26814 -15.11516 -14.80744 -14.42624 -14.21963 -14.08320 -13.83338 -13.66381 -13.48661 -13.27811 -13.21571 -12.94693 -12.73676 -12.65753 -12.43319 -12.14973 -12.10331 -12.00024 -11.84720 -11.73929 -11.63136 -11.47928 -11.37069 -10.75069 -10.68859 -10.44677 -9.63816 -9.48131 -9.36078 -8.33404 -6.41006 0.62676 0.70211 1.30574 1.37165 1.45851 1.84965 2.25285 2.31117 2.97126 3.13973 3.26650 3.74792 3.80694 3.88324 4.04465 4.11297 4.12521 4.21382 4.23195 4.33266 4.37973 4.40365 4.47657 4.56043 4.61230 4.64212 4.67554 4.80129 4.85116 4.89223 4.90184 4.91784 5.05915 5.09494 5.16745 5.20530 5.28340 5.32332 5.40753 5.44559 5.49251 5.68205 5.72425 5.76407 5.96943 6.20436 6.29636 6.53164 6.62466 6.91224 7.21544 7.41512 8.82612 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.005211 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.181387 B = 5371.484002 C = 6421.130603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.116 3.884 4 O -0.576 6.576 5 C -0.134 4.134 6 C -0.129 4.129 7 C 0.099 3.901 8 N -0.603 5.603 9 C 0.531 3.469 10 O -0.592 6.592 11 C 0.041 3.959 12 H 0.072 0.928 13 C -0.492 4.492 14 H 0.017 0.983 15 C 0.034 3.966 16 N -0.935 5.935 17 Si 0.915 3.085 18 H -0.239 1.239 19 H -0.289 1.289 20 H -0.232 1.232 21 C -0.067 4.067 22 C -0.146 4.146 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.138 4.138 26 C -0.098 4.098 27 C 0.117 3.883 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.379 0.621 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.269 0.731 41 H 0.127 0.873 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.131 0.869 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.228 -11.651 -11.452 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.075 3.925 4 O -0.383 6.383 5 C -0.171 4.171 6 C -0.167 4.167 7 C -0.023 4.023 8 N -0.334 5.334 9 C 0.321 3.679 10 O -0.473 6.473 11 C 0.019 3.981 12 H 0.090 0.910 13 C -0.530 4.530 14 H 0.035 0.965 15 C -0.166 4.166 16 N -0.573 5.573 17 Si 0.737 3.263 18 H -0.163 1.163 19 H -0.215 1.215 20 H -0.155 1.155 21 C -0.068 4.068 22 C -0.164 4.164 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.116 4.116 27 C -0.005 4.005 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.228 0.772 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.079 0.921 41 H 0.145 0.855 42 H 0.170 0.830 43 H 0.170 0.830 44 H 0.148 0.852 45 H 0.098 0.902 46 H 0.124 0.876 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.434 -11.790 -10.947 16.094 hybrid contribution -0.940 0.723 0.366 1.241 sum -1.374 -11.067 -10.581 15.373 Atomic orbital electron populations 1.21838 0.93965 1.02894 1.02383 1.22078 0.97804 0.94645 1.03321 1.21727 0.93476 0.92573 0.84742 1.86737 1.28718 1.81639 1.41232 1.22237 1.01687 0.94460 0.98764 1.21701 0.94556 0.98179 1.02298 1.21889 0.94631 0.95351 0.90448 1.47902 1.39127 1.12663 1.33741 1.21137 0.78128 0.89166 0.79431 1.90519 1.59425 1.61464 1.35893 1.18264 0.91478 0.90264 0.98052 0.91004 1.20254 1.25741 0.98254 1.08762 0.96478 1.25780 0.94257 0.95360 1.01184 1.70028 1.40060 1.07396 1.39834 0.86236 0.81870 0.77908 0.80322 1.16271 1.21486 1.15499 1.20206 0.95172 0.97152 0.94308 1.21300 0.93073 1.02358 0.99651 1.21379 0.96585 1.00298 0.96029 1.21358 0.99265 1.00794 0.93671 1.21347 0.92534 1.01137 1.00617 1.20817 0.96681 0.98816 0.95324 1.21724 0.93142 0.82892 1.02740 0.93069 0.90915 0.91250 0.88960 0.92431 0.77244 0.88437 0.89209 0.88879 0.94138 0.91194 0.88625 0.92137 0.85542 0.82987 0.83036 0.85153 0.90222 0.87568 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.22 71.98 0.66 -1.56 16 2 C -0.14 -2.63 5.23 30.59 0.16 -2.47 16 3 C 0.12 3.02 0.76 -10.72 -0.01 3.01 16 4 O -0.58 -19.60 12.17 -148.98 -1.81 -21.42 16 5 C -0.13 -2.84 4.45 30.62 0.14 -2.70 16 6 C -0.13 -3.73 5.93 30.53 0.18 -3.55 16 7 C 0.10 3.26 6.17 86.22 0.53 3.79 16 8 N -0.60 -23.45 2.92 -819.72 -2.39 -25.84 16 9 C 0.53 25.74 6.78 87.66 0.59 26.34 16 10 O -0.59 -32.15 14.57 -3.03 -0.04 -32.19 16 11 C 0.04 2.00 1.10 -13.03 -0.01 1.99 16 12 H 0.07 3.21 3.65 -2.39 -0.01 3.20 16 13 C -0.49 -28.43 7.71 25.60 0.20 -28.23 16 14 H 0.02 1.16 8.06 -2.91 -0.02 1.14 16 15 C 0.03 1.89 5.47 84.65 0.46 2.35 16 16 N -0.94 -57.23 13.96 21.44 0.30 -56.93 16 17 Si 0.92 40.32 25.86 68.60 1.77 42.10 16 18 H -0.24 -9.29 7.11 99.48 0.71 -8.59 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.23 -9.36 5.39 99.48 0.54 -8.82 16 21 C -0.07 -3.21 4.56 -19.86 -0.09 -3.30 16 22 C -0.15 -5.79 9.02 22.27 0.20 -5.59 16 23 C -0.13 -4.14 10.05 22.27 0.22 -3.92 16 24 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 25 C -0.14 -5.46 10.05 22.27 0.22 -5.24 16 26 C -0.10 -4.79 8.03 22.27 0.18 -4.61 16 27 C 0.12 3.77 5.39 86.37 0.47 4.23 16 28 H 0.05 0.79 6.89 -2.39 -0.02 0.77 16 29 H 0.07 0.88 6.32 -2.39 -0.02 0.87 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.38 9.84 7.53 -74.06 -0.56 9.28 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.09 1.54 6.27 -2.38 -0.01 1.53 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.04 1.52 7.61 -2.39 -0.02 1.50 16 38 H 0.07 2.70 4.06 -2.38 -0.01 2.69 16 39 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.13 4.47 7.26 -2.91 -0.02 4.45 16 42 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 43 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 44 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 45 H 0.08 4.42 7.67 -2.91 -0.02 4.40 16 46 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 47 H 0.06 2.38 7.01 -2.39 -0.02 2.37 16 Total: -1.00 -79.39 360.81 2.40 -76.98 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.25 Total: 40.91 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 4.33 Total: -23.61 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -2.09 Total: -82.77 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -1.86 Total: -53.61 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.77 Total: 42.10 kcal Total: -79.39 2.40 -76.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363219704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.908 kcal (2) G-P(sol) polarization free energy of solvation -79.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds