Wall clock time and date at job start Tue Mar 31 2020 12:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47490 * 2 1 4 4 O 1.42903 * 109.49490 * 65.06399 * 3 2 1 5 5 C 1.53040 * 109.49695 * 305.00021 * 3 2 1 6 6 C 1.53039 * 109.53510 * 178.68387 * 5 3 2 7 7 C 1.53192 * 109.31530 * 61.36466 * 6 5 3 8 8 N 1.46925 * 108.77168 * 305.36111 * 7 6 5 9 9 C 1.34781 * 120.63171 * 233.58051 * 8 7 6 10 10 O 1.21274 * 119.99997 * 180.02562 * 9 8 7 11 11 C 1.50705 * 119.99656 * 0.02562 * 9 8 7 12 12 H 1.08991 * 109.47455 * 59.99359 * 11 9 8 13 13 C 1.50705 * 109.47050 * 299.99177 * 11 9 8 14 14 H 1.07997 * 119.99999 * 333.73060 * 13 11 9 15 15 C 1.37873 * 119.99931 * 153.72229 * 13 11 9 16 16 N 1.31519 * 120.00218 * 5.64389 * 15 13 11 17 17 Si 1.86797 * 120.00123 * 185.64290 * 15 13 11 18 18 H 1.48506 * 109.47051 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47196 * 120.00108 * 17 15 13 20 20 H 1.48509 * 109.47029 * 240.00248 * 17 15 13 21 21 C 1.50700 * 109.46695 * 179.97438 * 11 9 8 22 22 C 1.38235 * 120.00015 * 66.02352 * 21 11 9 23 23 C 1.38239 * 119.99664 * 179.76093 * 22 21 11 24 24 C 1.38231 * 120.00201 * 0.48910 * 23 22 21 25 25 C 1.38238 * 119.99977 * 359.78406 * 24 23 22 26 26 C 1.38236 * 119.99993 * 359.96153 * 25 24 23 27 27 C 1.46927 * 118.73742 * 53.86620 * 8 7 6 28 28 H 1.09002 * 109.46903 * 59.99803 * 1 2 3 29 29 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47082 * 300.00169 * 1 2 3 31 31 H 1.09004 * 109.47241 * 239.99542 * 2 1 3 32 32 H 1.09002 * 109.46903 * 120.00196 * 2 1 3 33 33 H 0.96693 * 114.00072 * 299.93364 * 4 3 2 34 34 H 1.08994 * 109.46004 * 58.65941 * 5 3 2 35 35 H 1.08998 * 109.44809 * 298.69462 * 5 3 2 36 36 H 1.08997 * 109.49751 * 301.40767 * 6 5 3 37 37 H 1.09000 * 109.49330 * 181.31666 * 6 5 3 38 38 H 1.09007 * 109.58363 * 185.57747 * 7 6 5 39 39 H 1.08996 * 109.58850 * 65.15047 * 7 6 5 40 40 H 0.96992 * 120.00540 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.00450 * 359.97438 * 22 21 11 42 42 H 1.07997 * 119.99723 * 180.25216 * 23 22 21 43 43 H 1.07995 * 120.00381 * 179.76398 * 24 23 22 44 44 H 1.08001 * 120.00133 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00422 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.58663 * 65.92435 * 27 8 7 47 47 H 1.09000 * 109.58253 * 186.34512 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6636 2.0814 1.2215 5 6 1.4302 2.1999 -1.1817 6 6 1.9141 3.6517 -1.1637 7 6 3.4391 3.6793 -1.3068 8 7 4.0277 2.8340 -0.2590 9 6 4.9733 3.3233 0.5675 10 8 5.4517 2.6153 1.4281 11 6 5.4360 4.7501 0.4222 12 1 4.5898 5.4226 0.5626 13 6 6.0155 4.9526 -0.9542 14 1 6.4380 4.1159 -1.4906 15 6 6.0061 6.2059 -1.5286 16 7 5.5941 7.2443 -0.8346 17 14 6.5787 6.4292 -3.2926 18 1 6.9898 5.1154 -3.8497 19 1 5.4689 6.9871 -4.1064 20 1 7.7333 7.3627 -3.3238 21 6 6.4888 5.0448 1.4593 22 6 7.7113 4.4017 1.4053 23 6 8.6789 4.6757 2.3538 24 6 8.4203 5.5852 3.3622 25 6 7.1958 6.2241 3.4194 26 6 6.2301 5.9541 2.4679 27 6 3.5705 1.4434 -0.1335 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.7086 2.1176 1.3684 34 1 0.3432 2.1784 -1.1048 35 1 1.7377 1.7262 -2.1140 36 1 1.6286 4.1186 -0.2211 37 1 1.4611 4.1964 -1.9920 38 1 3.7981 4.7025 -1.1954 39 1 3.7212 3.2956 -2.2872 40 1 5.5878 8.1261 -1.2386 41 1 7.9118 3.6878 0.6201 42 1 9.6354 4.1763 2.3093 43 1 9.1748 5.7965 4.1054 44 1 6.9936 6.9344 4.2075 45 1 5.2733 6.4529 2.5128 46 1 3.8631 0.8810 -1.0203 47 1 4.0163 0.9908 0.7523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363219706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:40 Heat of formation + Delta-G solvation = -71.790876 kcal Electronic energy + Delta-G solvation = -28105.818810 eV Core-core repulsion = 24445.786004 eV Total energy + Delta-G solvation = -3660.032806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.95123 -38.57124 -37.39221 -35.09024 -33.67049 -32.93909 -31.55304 -31.02124 -29.82662 -29.35281 -27.21270 -25.25408 -24.04986 -23.20782 -21.71601 -21.47621 -20.60913 -19.79748 -18.16473 -16.82537 -16.42893 -16.06043 -15.87555 -15.27322 -15.07214 -14.55889 -14.40373 -14.28583 -13.98905 -13.86394 -13.62784 -12.95078 -12.68669 -12.54760 -12.46834 -12.23960 -12.19092 -12.16238 -11.74313 -11.60508 -11.55935 -11.28607 -11.13227 -11.03714 -10.93810 -10.74373 -10.66041 -10.34851 -10.18953 -10.10007 -9.88847 -9.60836 -9.35825 -8.70321 -8.49143 -7.84449 -7.81097 -7.49035 -6.23961 -4.29142 2.49707 2.51883 3.18023 3.28178 3.30756 3.78272 3.85229 4.29011 4.31571 4.77138 4.77568 4.91743 4.92730 5.09243 5.11407 5.26808 5.34064 5.53668 5.69695 5.73377 5.75715 5.81162 5.84757 5.87878 5.93020 6.00157 6.01997 6.05148 6.09394 6.14344 6.28512 6.31566 6.45250 6.59177 6.64036 6.69884 6.77612 6.94338 7.06985 7.24411 7.37473 7.47417 7.56289 7.66053 7.82408 7.83599 8.05357 8.13939 8.35858 8.71619 9.29551 9.34390 10.83475 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.005220 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.561583 B = 5362.272784 C = 6847.025413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.150 4.150 3 C 0.120 3.880 4 O -0.543 6.543 5 C -0.145 4.145 6 C -0.134 4.134 7 C 0.110 3.890 8 N -0.602 5.602 9 C 0.534 3.466 10 O -0.566 6.566 11 C 0.056 3.944 12 H 0.080 0.920 13 C -0.511 4.511 14 H 0.063 0.937 15 C 0.073 3.927 16 N -0.873 5.873 17 Si 0.892 3.108 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.003 4.003 22 C -0.085 4.085 23 C -0.136 4.136 24 C -0.150 4.150 25 C -0.133 4.133 26 C -0.112 4.112 27 C 0.125 3.875 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.365 0.635 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.054 0.946 40 H 0.266 0.734 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 -8.095 -0.743 12.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.079 3.921 4 O -0.348 6.348 5 C -0.182 4.182 6 C -0.173 4.173 7 C -0.013 4.013 8 N -0.334 5.334 9 C 0.325 3.675 10 O -0.445 6.445 11 C 0.035 3.965 12 H 0.097 0.903 13 C -0.549 4.549 14 H 0.081 0.919 15 C -0.132 4.132 16 N -0.508 5.508 17 Si 0.719 3.281 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.208 1.208 21 C -0.004 4.004 22 C -0.103 4.103 23 C -0.154 4.154 24 C -0.168 4.168 25 C -0.151 4.151 26 C -0.131 4.131 27 C 0.001 3.999 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.211 0.789 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.087 0.913 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.022 -8.187 -0.243 11.465 hybrid contribution -0.350 0.198 -1.192 1.258 sum -8.373 -7.989 -1.434 11.661 Atomic orbital electron populations 1.21842 0.95732 1.01876 1.01874 1.22162 0.96341 0.97291 1.03010 1.21682 0.95576 0.90318 0.84565 1.86708 1.27198 1.81110 1.39760 1.22267 1.00100 0.97268 0.98610 1.21920 0.97393 0.95502 1.02465 1.21910 0.90750 0.98880 0.89728 1.47770 1.40415 1.10850 1.34403 1.21524 0.76746 0.90877 0.78332 1.90562 1.57099 1.61552 1.35254 1.18078 0.95174 0.88530 0.94679 0.90254 1.20691 1.41160 0.94909 0.98131 0.91901 1.24934 0.94579 0.95706 0.97949 1.69960 1.45366 0.99278 1.36212 0.86524 0.78660 0.78521 0.84415 1.19501 1.20646 1.20829 1.19959 0.95344 0.92834 0.92298 1.20793 0.93176 0.98795 0.97518 1.20922 0.98755 0.99424 0.96321 1.20764 0.97095 0.99583 0.99373 1.20876 0.94413 1.00535 0.99291 1.20935 0.98863 0.98747 0.94524 1.21459 0.90646 0.85280 1.02488 0.92163 0.92576 0.92710 0.91058 0.91021 0.78863 0.91776 0.91318 0.91133 0.91436 0.85810 0.92732 0.92456 0.87270 0.87759 0.87870 0.87720 0.87229 0.91325 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.22 37.16 0.34 -0.94 16 2 C -0.15 -1.54 5.23 -26.73 -0.14 -1.68 16 3 C 0.12 1.58 0.76 -90.28 -0.07 1.51 16 4 O -0.54 -8.03 12.18 -35.23 -0.43 -8.46 16 5 C -0.14 -1.71 4.44 -26.69 -0.12 -1.83 16 6 C -0.13 -1.92 5.94 -26.61 -0.16 -2.08 16 7 C 0.11 1.95 5.59 -3.71 -0.02 1.93 16 8 N -0.60 -11.74 2.91 -172.50 -0.50 -12.24 16 9 C 0.53 12.44 6.98 -10.98 -0.08 12.36 16 10 O -0.57 -14.51 14.83 5.56 0.08 -14.43 16 11 C 0.06 1.36 1.44 -94.07 -0.13 1.23 16 12 H 0.08 2.03 6.96 -51.93 -0.36 1.67 16 13 C -0.51 -12.61 5.32 -34.44 -0.18 -12.79 16 14 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 15 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 16 N -0.87 -22.73 13.00 55.43 0.72 -22.01 16 17 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.00 -0.08 4.30 -104.62 -0.45 -0.53 16 22 C -0.08 -1.99 8.31 -39.58 -0.33 -2.32 16 23 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 24 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 25 C -0.13 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.11 -2.58 9.67 -39.58 -0.38 -2.97 16 27 C 0.13 2.07 5.43 -3.49 -0.02 2.05 16 28 H 0.06 0.47 6.32 -51.93 -0.33 0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.42 6.89 -51.93 -0.36 0.07 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.36 3.92 7.53 45.56 0.34 4.26 16 34 H 0.06 0.64 6.27 -51.93 -0.33 0.31 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.10 7.61 -51.93 -0.40 0.71 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.12 2.56 4.83 -51.93 -0.25 2.31 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 41 H 0.11 2.59 7.90 -52.49 -0.41 2.18 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.11 2.44 7.96 -52.49 -0.42 2.03 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 1.73 7.00 -51.93 -0.36 1.36 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -29.83 368.37 -9.27 -39.10 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.64 Total: 11.95 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -3.03 Total: -14.03 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.22 Total: -34.25 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.35 Total: -22.89 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.83 -9.27 -39.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363219706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.694 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds