Wall clock time and date at job start Tue Mar 31 2020 12:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47490 * 2 1 4 4 O 1.42903 * 109.49490 * 65.06399 * 3 2 1 5 5 C 1.53040 * 109.49695 * 305.00021 * 3 2 1 6 6 C 1.53039 * 109.53510 * 178.68387 * 5 3 2 7 7 C 1.53192 * 109.31530 * 61.36466 * 6 5 3 8 8 N 1.46925 * 108.77168 * 305.36111 * 7 6 5 9 9 C 1.34781 * 120.63171 * 233.58051 * 8 7 6 10 10 O 1.21274 * 119.99997 * 180.02562 * 9 8 7 11 11 C 1.50705 * 119.99656 * 0.02562 * 9 8 7 12 12 H 1.08991 * 109.47455 * 59.99359 * 11 9 8 13 13 C 1.50705 * 109.47050 * 299.99177 * 11 9 8 14 14 H 1.07997 * 119.99999 * 333.73060 * 13 11 9 15 15 C 1.37873 * 119.99931 * 153.72229 * 13 11 9 16 16 N 1.31519 * 120.00218 * 5.64389 * 15 13 11 17 17 Si 1.86797 * 120.00123 * 185.64290 * 15 13 11 18 18 H 1.48506 * 109.47051 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47196 * 120.00108 * 17 15 13 20 20 H 1.48509 * 109.47029 * 240.00248 * 17 15 13 21 21 C 1.50700 * 109.46695 * 179.97438 * 11 9 8 22 22 C 1.38235 * 120.00015 * 66.02352 * 21 11 9 23 23 C 1.38239 * 119.99664 * 179.76093 * 22 21 11 24 24 C 1.38231 * 120.00201 * 0.48910 * 23 22 21 25 25 C 1.38238 * 119.99977 * 359.78406 * 24 23 22 26 26 C 1.38236 * 119.99993 * 359.96153 * 25 24 23 27 27 C 1.46927 * 118.73742 * 53.86620 * 8 7 6 28 28 H 1.09002 * 109.46903 * 59.99803 * 1 2 3 29 29 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47082 * 300.00169 * 1 2 3 31 31 H 1.09004 * 109.47241 * 239.99542 * 2 1 3 32 32 H 1.09002 * 109.46903 * 120.00196 * 2 1 3 33 33 H 0.96693 * 114.00072 * 299.93364 * 4 3 2 34 34 H 1.08994 * 109.46004 * 58.65941 * 5 3 2 35 35 H 1.08998 * 109.44809 * 298.69462 * 5 3 2 36 36 H 1.08997 * 109.49751 * 301.40767 * 6 5 3 37 37 H 1.09000 * 109.49330 * 181.31666 * 6 5 3 38 38 H 1.09007 * 109.58363 * 185.57747 * 7 6 5 39 39 H 1.08996 * 109.58850 * 65.15047 * 7 6 5 40 40 H 0.96992 * 120.00540 * 179.97438 * 16 15 13 41 41 H 1.07998 * 120.00450 * 359.97438 * 22 21 11 42 42 H 1.07997 * 119.99723 * 180.25216 * 23 22 21 43 43 H 1.07995 * 120.00381 * 179.76398 * 24 23 22 44 44 H 1.08001 * 120.00133 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.00422 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.58663 * 65.92435 * 27 8 7 47 47 H 1.09000 * 109.58253 * 186.34512 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6636 2.0814 1.2215 5 6 1.4302 2.1999 -1.1817 6 6 1.9141 3.6517 -1.1637 7 6 3.4391 3.6793 -1.3068 8 7 4.0277 2.8340 -0.2590 9 6 4.9733 3.3233 0.5675 10 8 5.4517 2.6153 1.4281 11 6 5.4360 4.7501 0.4222 12 1 4.5898 5.4226 0.5626 13 6 6.0155 4.9526 -0.9542 14 1 6.4380 4.1159 -1.4906 15 6 6.0061 6.2059 -1.5286 16 7 5.5941 7.2443 -0.8346 17 14 6.5787 6.4292 -3.2926 18 1 6.9898 5.1154 -3.8497 19 1 5.4689 6.9871 -4.1064 20 1 7.7333 7.3627 -3.3238 21 6 6.4888 5.0448 1.4593 22 6 7.7113 4.4017 1.4053 23 6 8.6789 4.6757 2.3538 24 6 8.4203 5.5852 3.3622 25 6 7.1958 6.2241 3.4194 26 6 6.2301 5.9541 2.4679 27 6 3.5705 1.4434 -0.1335 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.7086 2.1176 1.3684 34 1 0.3432 2.1784 -1.1048 35 1 1.7377 1.7262 -2.1140 36 1 1.6286 4.1186 -0.2211 37 1 1.4611 4.1964 -1.9920 38 1 3.7981 4.7025 -1.1954 39 1 3.7212 3.2956 -2.2872 40 1 5.5878 8.1261 -1.2386 41 1 7.9118 3.6878 0.6201 42 1 9.6354 4.1763 2.3093 43 1 9.1748 5.7965 4.1054 44 1 6.9936 6.9344 4.2075 45 1 5.2733 6.4529 2.5128 46 1 3.8631 0.8810 -1.0203 47 1 4.0163 0.9908 0.7523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363219706.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:39 Heat of formation + Delta-G solvation = -89.532154 kcal Electronic energy + Delta-G solvation = -28106.588130 eV Core-core repulsion = 24445.786004 eV Total energy + Delta-G solvation = -3660.802126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40761 -40.07726 -38.99146 -36.56754 -35.49596 -33.94581 -32.85583 -32.82052 -31.52557 -30.58517 -28.87473 -26.69449 -25.57402 -24.51988 -23.20167 -22.98202 -22.13708 -20.97358 -19.77815 -18.68908 -17.81921 -17.54559 -17.41916 -16.81306 -16.45163 -16.17755 -15.74477 -15.56652 -15.37554 -15.26983 -15.12005 -14.56940 -14.12089 -13.96471 -13.86315 -13.75604 -13.63161 -13.31404 -13.26435 -13.18637 -12.80753 -12.77578 -12.62233 -12.44573 -12.16016 -12.12612 -11.97335 -11.84355 -11.73094 -11.57805 -11.32607 -11.23971 -10.66763 -10.62590 -10.30798 -9.54663 -9.37173 -9.22971 -8.16849 -6.27235 0.77279 0.82682 1.41387 1.45656 1.55158 1.96662 2.32603 2.44936 3.10579 3.24441 3.28940 3.78598 3.83049 3.90322 4.17087 4.19449 4.25948 4.29799 4.31200 4.39824 4.44434 4.54074 4.61819 4.66958 4.67713 4.71782 4.87547 4.88985 4.94470 4.98224 5.06972 5.07827 5.10035 5.15072 5.25975 5.29725 5.38431 5.44300 5.45371 5.49205 5.67228 5.78577 5.80928 5.90967 5.96472 6.25801 6.41285 6.65338 6.74239 6.93647 7.36604 7.52694 8.90888 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.005220 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.561583 B = 5362.272784 C = 6847.025413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.123 3.877 4 O -0.572 6.572 5 C -0.136 4.136 6 C -0.128 4.128 7 C 0.106 3.894 8 N -0.597 5.597 9 C 0.525 3.475 10 O -0.600 6.600 11 C 0.064 3.936 12 H 0.053 0.947 13 C -0.507 4.507 14 H 0.050 0.950 15 C 0.037 3.963 16 N -0.901 5.901 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.288 1.288 21 C -0.031 4.031 22 C -0.112 4.112 23 C -0.136 4.136 24 C -0.145 4.145 25 C -0.131 4.131 26 C -0.139 4.139 27 C 0.116 3.884 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.382 0.618 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.266 0.734 41 H 0.093 0.907 42 H 0.135 0.865 43 H 0.147 0.853 44 H 0.139 0.861 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 -8.774 -1.480 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.181 4.181 3 C 0.082 3.918 4 O -0.380 6.380 5 C -0.174 4.174 6 C -0.166 4.166 7 C -0.016 4.016 8 N -0.328 5.328 9 C 0.316 3.684 10 O -0.482 6.482 11 C 0.043 3.957 12 H 0.071 0.929 13 C -0.545 4.545 14 H 0.068 0.932 15 C -0.165 4.165 16 N -0.537 5.537 17 Si 0.774 3.226 18 H -0.192 1.192 19 H -0.193 1.193 20 H -0.215 1.215 21 C -0.032 4.032 22 C -0.130 4.130 23 C -0.154 4.154 24 C -0.163 4.163 25 C -0.149 4.149 26 C -0.157 4.157 27 C -0.007 4.007 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.231 0.769 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.120 0.880 46 H 0.109 0.891 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.829 -8.882 -1.008 12.564 hybrid contribution -0.092 0.391 -0.893 0.979 sum -8.921 -8.491 -1.901 12.462 Atomic orbital electron populations 1.21830 0.93623 1.02917 1.02569 1.22088 0.98048 0.94821 1.03121 1.21664 0.92923 0.92468 0.84720 1.86667 1.29026 1.81603 1.40730 1.22243 1.01761 0.94886 0.98482 1.21847 0.94481 0.97855 1.02393 1.21945 0.93304 0.96782 0.89557 1.47816 1.39106 1.12326 1.33569 1.21438 0.77577 0.90602 0.78801 1.90516 1.58650 1.62145 1.36864 1.17905 0.94365 0.88620 0.94838 0.92901 1.20623 1.40856 0.94608 0.98367 0.93151 1.25516 0.94630 0.95267 1.01082 1.70064 1.46495 0.99554 1.37608 0.85645 0.78185 0.78209 0.80567 1.19211 1.19344 1.21475 1.20108 0.95849 0.94016 0.93247 1.20821 0.94037 0.99469 0.98664 1.21309 0.99220 0.99384 0.95512 1.21246 0.97546 0.98045 0.99433 1.21285 0.94018 1.00575 0.98981 1.21072 0.99682 0.99312 0.95646 1.21758 0.93491 0.83294 1.02166 0.91039 0.91429 0.92413 0.89747 0.92221 0.76870 0.88718 0.89658 0.92977 0.89220 0.89239 0.91463 0.92468 0.88921 0.84691 0.83512 0.84364 0.88025 0.89133 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.22 71.98 0.66 -1.33 16 2 C -0.14 -2.63 5.23 30.59 0.16 -2.47 16 3 C 0.12 3.09 0.76 -10.57 -0.01 3.08 16 4 O -0.57 -16.82 12.18 -148.98 -1.81 -18.64 16 5 C -0.14 -2.84 4.44 30.62 0.14 -2.71 16 6 C -0.13 -3.51 5.94 30.67 0.18 -3.33 16 7 C 0.11 3.84 5.59 86.36 0.48 4.32 16 8 N -0.60 -24.20 2.91 -818.06 -2.38 -26.57 16 9 C 0.52 25.99 6.98 87.66 0.61 26.61 16 10 O -0.60 -32.69 14.83 -3.01 -0.04 -32.73 16 11 C 0.06 3.29 1.44 -13.03 -0.02 3.27 16 12 H 0.05 2.94 6.96 -2.39 -0.02 2.93 16 13 C -0.51 -26.19 5.32 25.60 0.14 -26.06 16 14 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 15 C 0.04 1.90 5.28 84.65 0.45 2.35 16 16 N -0.90 -48.55 13.00 21.45 0.28 -48.27 16 17 Si 0.95 40.72 29.54 68.60 2.03 42.75 16 18 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 20 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 21 C -0.03 -1.60 4.30 -19.87 -0.09 -1.68 16 22 C -0.11 -5.44 8.31 22.27 0.18 -5.25 16 23 C -0.14 -5.56 10.05 22.27 0.22 -5.34 16 24 C -0.14 -5.37 10.05 22.27 0.22 -5.15 16 25 C -0.13 -5.21 10.05 22.27 0.22 -4.99 16 26 C -0.14 -6.61 9.67 22.27 0.22 -6.39 16 27 C 0.12 3.87 5.43 86.51 0.47 4.34 16 28 H 0.07 0.80 6.32 -2.39 -0.02 0.78 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.73 6.89 -2.39 -0.02 0.71 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.38 7.77 7.53 -74.06 -0.56 7.21 16 34 H 0.09 1.47 6.27 -2.39 -0.01 1.46 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.63 7.61 -2.39 -0.02 1.61 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.09 3.89 4.83 -2.38 -0.01 3.88 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 41 H 0.09 4.67 7.90 -2.91 -0.02 4.65 16 42 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 44 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 45 H 0.10 4.82 7.96 -2.91 -0.02 4.80 16 46 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 47 H 0.06 2.49 7.00 -2.39 -0.02 2.47 16 Total: -1.00 -68.81 368.37 2.72 -66.09 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: 0.41 Total: 38.11 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.25 Total: -20.74 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -2.10 Total: -74.85 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.86 Total: -51.37 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -68.81 2.72 -66.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363219706.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.444 kcal (2) G-P(sol) polarization free energy of solvation -68.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds