Wall clock time and date at job start Tue Mar 31 2020 11:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00008 * 2 1 4 4 N 1.46502 * 109.47049 * 124.48235 * 3 2 1 5 5 C 1.37661 * 127.17298 * 84.54369 * 4 3 2 6 6 C 1.47404 * 126.48906 * 359.97438 * 5 4 3 7 7 N 1.36845 * 127.16287 * 354.59713 * 6 5 4 8 8 H 0.96998 * 126.00626 * 0.02562 * 7 6 5 9 9 N 1.28710 * 107.98879 * 180.02562 * 7 6 5 10 10 N 1.28519 * 110.62357 * 0.02562 * 9 7 6 11 11 C 1.33466 * 109.36758 * 359.72488 * 10 9 7 12 12 C 1.50696 * 126.82574 * 180.29740 * 11 10 9 13 13 N 1.31393 * 107.02038 * 179.97438 * 5 4 3 14 14 N 1.28502 * 109.92493 * 359.97438 * 13 5 4 15 15 C 1.31374 * 110.11901 * 359.74358 * 14 13 5 16 16 N 1.38407 * 126.36115 * 180.28989 * 15 14 13 17 17 C 1.46903 * 110.99818 * 254.55027 * 16 15 14 18 18 C 1.46895 * 110.99980 * 18.50912 * 16 15 14 19 19 H 1.09003 * 109.46948 * 54.99802 * 18 16 15 20 20 C 1.52996 * 109.47165 * 294.99805 * 18 16 15 21 21 C 1.50699 * 109.46957 * 174.99640 * 18 16 15 22 22 H 1.08003 * 119.99953 * 0.02562 * 21 18 16 23 23 C 1.37883 * 119.99882 * 179.97438 * 21 18 16 24 24 N 1.31513 * 120.00129 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 119.99894 * 180.02562 * 23 21 18 26 26 H 1.48495 * 109.47055 * 90.00223 * 25 23 21 27 27 H 1.48500 * 109.47063 * 210.00325 * 25 23 21 28 28 H 1.48505 * 109.47000 * 329.99966 * 25 23 21 29 29 H 1.08003 * 119.99796 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00267 * 359.72617 * 1 2 3 31 31 H 1.08001 * 120.00270 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47670 * 244.48691 * 3 2 1 33 33 H 1.09008 * 109.47065 * 4.48534 * 3 2 1 34 34 H 1.08996 * 109.47638 * 270.15622 * 12 11 10 35 35 H 1.09004 * 109.47472 * 30.15514 * 12 11 10 36 36 H 1.08995 * 109.47295 * 150.15408 * 12 11 10 37 37 H 1.09004 * 109.46888 * 56.28909 * 17 16 15 38 38 H 1.09002 * 109.46582 * 176.27957 * 17 16 15 39 39 H 1.08994 * 109.47582 * 296.28291 * 17 16 15 40 40 H 1.09001 * 109.47615 * 179.97438 * 20 18 16 41 41 H 1.09003 * 109.47186 * 299.99852 * 20 18 16 42 42 H 1.09000 * 109.47525 * 59.99730 * 20 18 16 43 43 H 0.96993 * 120.00021 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9849 1.3369 1.1386 5 6 4.2554 0.8100 1.1954 6 6 4.9582 0.0977 0.1131 7 7 4.4504 -0.2621 -1.1057 8 1 3.5488 -0.0922 -1.4204 9 7 5.3795 -0.8655 -1.7609 10 7 6.4572 -0.9288 -1.0637 11 6 6.2565 -0.3380 0.1161 12 6 7.2585 -0.1834 1.2310 13 7 4.7229 1.0623 2.3972 14 7 3.8445 1.7015 3.0836 15 6 2.7651 1.9015 2.3619 16 7 1.6171 2.5596 2.7676 17 6 0.5288 1.6078 3.0278 18 6 1.8784 3.3957 3.9468 19 1 2.7008 4.0785 3.7329 20 6 2.2516 2.5034 5.1322 21 6 0.6421 4.1885 4.2844 22 1 -0.2488 4.0816 3.6833 23 6 0.6481 5.0497 5.3612 24 7 1.7328 5.1796 6.0934 25 14 -0.8847 6.0319 5.7801 26 1 -1.7282 5.2547 6.7232 27 1 -0.4917 7.3173 6.4114 28 1 -1.6525 6.3046 4.5385 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9352 0.0045 31 1 1.8501 -0.9353 -0.0004 32 1 2.6285 1.3985 -0.9274 33 1 1.3578 2.1320 0.0804 34 1 7.1981 -1.0449 1.8960 35 1 8.2623 -0.1184 0.8110 36 1 7.0402 0.7250 1.7924 37 1 0.8552 0.8757 3.7665 38 1 -0.3403 2.1448 3.4080 39 1 0.2639 1.0968 2.1023 40 1 2.4460 3.1238 6.0071 41 1 1.4293 1.8206 5.3460 42 1 3.1458 1.9299 4.8880 43 1 1.7371 5.7856 6.8506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520409102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:08 Heat of formation + Delta-G solvation = 222.306353 kcal Electronic energy + Delta-G solvation = -27308.258867 eV Core-core repulsion = 23622.024232 eV Total energy + Delta-G solvation = -3686.234634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.53372 -42.59830 -37.51489 -36.56851 -34.05391 -33.31758 -33.07911 -32.48085 -29.53891 -28.86238 -27.71042 -27.05144 -25.53643 -25.25588 -23.62276 -22.80580 -21.70151 -21.04139 -20.29905 -19.61642 -18.35493 -17.02928 -16.68925 -16.26860 -16.14040 -15.90090 -15.39917 -14.98887 -14.60692 -14.00050 -13.86013 -13.77635 -13.35411 -13.04296 -12.82279 -12.64186 -12.51272 -12.01041 -11.94292 -11.83702 -11.56900 -11.37250 -11.13388 -11.02593 -10.88191 -10.82689 -10.58160 -10.41967 -10.23147 -10.15930 -10.02577 -9.92934 -9.77168 -8.90663 -8.68901 -8.47935 -7.62681 -6.11922 -4.20018 0.76168 1.49696 2.02036 2.18897 2.38885 2.45006 3.17270 3.22565 3.30050 3.31629 3.86467 4.11779 4.21730 4.33569 4.39048 4.45334 4.58790 4.69656 4.86005 5.10031 5.19662 5.35600 5.40957 5.58531 5.68208 5.73813 5.78742 5.88772 5.93849 5.97894 6.02790 6.12461 6.28752 6.36631 6.40726 6.56140 6.78642 7.02040 7.21641 7.31131 7.51712 7.63024 7.84022 8.17046 8.21328 8.32213 8.79503 8.97412 9.44923 10.94129 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003783 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.601163 B = 7398.859450 C = 8426.735570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.206 4.206 3 C 0.134 3.866 4 N -0.479 5.479 5 C 0.202 3.798 6 C 0.071 3.929 7 N -0.395 5.395 8 H 0.445 0.555 9 N -0.065 5.065 10 N -0.261 5.261 11 C 0.034 3.966 12 C -0.071 4.071 13 N -0.239 5.239 14 N -0.300 5.300 15 C 0.407 3.593 16 N -0.458 5.458 17 C 0.032 3.968 18 C 0.228 3.772 19 H 0.049 0.951 20 C -0.181 4.181 21 C -0.517 4.517 22 H 0.064 0.936 23 C 0.065 3.935 24 N -0.882 5.882 25 Si 0.899 3.101 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.034 0.966 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.021 0.979 42 H 0.056 0.944 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.151 -10.413 -12.856 16.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.225 4.225 3 C 0.011 3.989 4 N -0.176 5.176 5 C -0.063 4.063 6 C -0.063 4.063 7 N -0.121 5.121 8 H 0.292 0.708 9 N -0.044 5.044 10 N -0.129 5.129 11 C -0.106 4.106 12 C -0.129 4.129 13 N -0.082 5.082 14 N -0.146 5.146 15 C 0.052 3.948 16 N -0.182 5.182 17 C -0.115 4.115 18 C 0.124 3.876 19 H 0.067 0.933 20 C -0.241 4.241 21 C -0.555 4.555 22 H 0.082 0.918 23 C -0.138 4.138 24 N -0.520 5.520 25 Si 0.727 3.273 26 H -0.207 1.207 27 H -0.211 1.211 28 H -0.199 1.199 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.166 -10.656 -13.183 16.991 hybrid contribution -2.612 0.776 0.384 2.752 sum -1.446 -9.881 -12.798 16.233 Atomic orbital electron populations 1.24105 0.95372 1.03253 0.94581 1.23102 0.96924 0.97442 1.05040 1.21002 0.92577 0.98646 0.86679 1.46351 1.12984 1.45457 1.12805 1.20809 0.84204 1.05565 0.95696 1.18707 0.94249 1.06730 0.86564 1.45480 1.14934 1.40504 1.11198 0.70759 1.78174 0.92908 1.13661 1.19683 1.74919 1.16483 1.18064 1.03412 1.22156 0.92772 0.99630 0.96038 1.20234 0.95169 1.04495 0.93017 1.74392 1.22964 1.11698 0.99177 1.75067 1.00012 1.17558 1.21913 1.23245 0.96082 0.93301 0.82131 1.59318 1.00388 1.18203 1.40267 1.22475 0.94784 0.94615 0.99581 1.19429 0.97946 0.89060 0.81167 0.93344 1.22605 0.98884 0.99571 1.03012 1.20985 0.97640 1.24060 1.12842 0.91817 1.24885 0.96364 0.96649 0.95878 1.69909 1.27148 1.36810 1.18127 0.86484 0.82787 0.79496 0.78541 1.20653 1.21125 1.19872 0.87261 0.87113 0.86985 0.89733 0.86175 0.90054 0.90529 0.88742 0.94688 0.88437 0.93006 0.89253 0.95997 0.92568 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 12.51 29.01 0.36 -0.62 16 2 C -0.21 -1.75 8.63 -36.03 -0.31 -2.06 16 3 C 0.13 1.37 5.54 -5.20 -0.03 1.34 16 4 N -0.48 -7.13 2.82 -116.05 -0.33 -7.46 16 5 C 0.20 3.15 7.88 -153.77 -1.21 1.94 16 6 C 0.07 0.96 7.11 -82.37 -0.59 0.37 16 7 N -0.40 -4.37 6.75 33.31 0.22 -4.15 16 8 H 0.44 3.55 5.88 -190.34 -1.12 2.43 16 9 N -0.06 -0.84 13.35 60.35 0.81 -0.03 16 10 N -0.26 -3.70 12.36 33.53 0.41 -3.28 16 11 C 0.03 0.47 7.30 -82.35 -0.60 -0.13 16 12 C -0.07 -0.82 10.03 36.00 0.36 -0.46 16 13 N -0.24 -4.42 10.64 32.52 0.35 -4.07 16 14 N -0.30 -6.24 8.86 30.32 0.27 -5.97 16 15 C 0.41 7.69 6.65 -318.84 -2.12 5.57 16 16 N -0.46 -9.05 4.73 -176.08 -0.83 -9.88 16 17 C 0.03 0.55 8.70 60.07 0.52 1.07 16 18 C 0.23 5.49 2.12 -68.87 -0.15 5.34 16 19 H 0.05 1.34 8.11 -51.93 -0.42 0.92 16 20 C -0.18 -4.37 8.27 37.16 0.31 -4.06 16 21 C -0.52 -13.11 7.83 -34.44 -0.27 -13.38 16 22 H 0.06 1.56 6.80 -52.48 -0.36 1.21 16 23 C 0.07 1.70 5.30 -17.82 -0.09 1.61 16 24 N -0.88 -24.27 11.32 55.43 0.63 -23.64 16 25 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.11 0.65 8.06 -52.48 -0.42 0.22 16 30 H 0.11 0.77 7.77 -52.49 -0.41 0.36 16 31 H 0.11 0.95 8.03 -52.49 -0.42 0.52 16 32 H 0.08 0.66 6.32 -51.93 -0.33 0.33 16 33 H 0.12 1.25 7.74 -51.92 -0.40 0.85 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 1.21 6.91 -51.93 -0.36 0.85 16 37 H 0.03 0.63 6.71 -51.93 -0.35 0.28 16 38 H 0.10 1.73 6.32 -51.93 -0.33 1.41 16 39 H 0.05 0.70 4.97 -51.93 -0.26 0.44 16 40 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 41 H 0.02 0.49 6.56 -51.93 -0.34 0.15 16 42 H 0.06 1.33 5.28 -51.93 -0.27 1.06 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -30.46 345.67 -8.18 -38.65 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.08 Total: 3.00 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.82 Total: -3.47 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 1.53 Total: -58.49 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.46 -8.18 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520409102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 260.952 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 230.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 222.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds