Wall clock time and date at job start Tue Mar 31 2020 11:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50693 * 120.00008 * 2 1 4 4 N 1.46502 * 109.47049 * 124.48235 * 3 2 1 5 5 C 1.37661 * 127.17298 * 84.54369 * 4 3 2 6 6 C 1.47404 * 126.48906 * 359.97438 * 5 4 3 7 7 N 1.36845 * 127.16287 * 354.59713 * 6 5 4 8 8 H 0.96998 * 126.00626 * 0.02562 * 7 6 5 9 9 N 1.28710 * 107.98879 * 180.02562 * 7 6 5 10 10 N 1.28519 * 110.62357 * 0.02562 * 9 7 6 11 11 C 1.33466 * 109.36758 * 359.72488 * 10 9 7 12 12 C 1.50696 * 126.82574 * 180.29740 * 11 10 9 13 13 N 1.31393 * 107.02038 * 179.97438 * 5 4 3 14 14 N 1.28502 * 109.92493 * 359.97438 * 13 5 4 15 15 C 1.31374 * 110.11901 * 359.74358 * 14 13 5 16 16 N 1.38407 * 126.36115 * 180.28989 * 15 14 13 17 17 C 1.46903 * 110.99818 * 254.55027 * 16 15 14 18 18 C 1.46895 * 110.99980 * 18.50912 * 16 15 14 19 19 H 1.09003 * 109.46948 * 54.99802 * 18 16 15 20 20 C 1.52996 * 109.47165 * 294.99805 * 18 16 15 21 21 C 1.50699 * 109.46957 * 174.99640 * 18 16 15 22 22 H 1.08003 * 119.99953 * 0.02562 * 21 18 16 23 23 C 1.37883 * 119.99882 * 179.97438 * 21 18 16 24 24 N 1.31513 * 120.00129 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 119.99894 * 180.02562 * 23 21 18 26 26 H 1.48495 * 109.47055 * 90.00223 * 25 23 21 27 27 H 1.48500 * 109.47063 * 210.00325 * 25 23 21 28 28 H 1.48505 * 109.47000 * 329.99966 * 25 23 21 29 29 H 1.08003 * 119.99796 * 179.97438 * 1 2 3 30 30 H 1.07994 * 120.00267 * 359.72617 * 1 2 3 31 31 H 1.08001 * 120.00270 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47670 * 244.48691 * 3 2 1 33 33 H 1.09008 * 109.47065 * 4.48534 * 3 2 1 34 34 H 1.08996 * 109.47638 * 270.15622 * 12 11 10 35 35 H 1.09004 * 109.47472 * 30.15514 * 12 11 10 36 36 H 1.08995 * 109.47295 * 150.15408 * 12 11 10 37 37 H 1.09004 * 109.46888 * 56.28909 * 17 16 15 38 38 H 1.09002 * 109.46582 * 176.27957 * 17 16 15 39 39 H 1.08994 * 109.47582 * 296.28291 * 17 16 15 40 40 H 1.09001 * 109.47615 * 179.97438 * 20 18 16 41 41 H 1.09003 * 109.47186 * 299.99852 * 20 18 16 42 42 H 1.09000 * 109.47525 * 59.99730 * 20 18 16 43 43 H 0.96993 * 120.00021 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9849 1.3369 1.1386 5 6 4.2554 0.8100 1.1954 6 6 4.9582 0.0977 0.1131 7 7 4.4504 -0.2621 -1.1057 8 1 3.5488 -0.0922 -1.4204 9 7 5.3795 -0.8655 -1.7609 10 7 6.4572 -0.9288 -1.0637 11 6 6.2565 -0.3380 0.1161 12 6 7.2585 -0.1834 1.2310 13 7 4.7229 1.0623 2.3972 14 7 3.8445 1.7015 3.0836 15 6 2.7651 1.9015 2.3619 16 7 1.6171 2.5596 2.7676 17 6 0.5288 1.6078 3.0278 18 6 1.8784 3.3957 3.9468 19 1 2.7008 4.0785 3.7329 20 6 2.2516 2.5034 5.1322 21 6 0.6421 4.1885 4.2844 22 1 -0.2488 4.0816 3.6833 23 6 0.6481 5.0497 5.3612 24 7 1.7328 5.1796 6.0934 25 14 -0.8847 6.0319 5.7801 26 1 -1.7282 5.2547 6.7232 27 1 -0.4917 7.3173 6.4114 28 1 -1.6525 6.3046 4.5385 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9352 0.0045 31 1 1.8501 -0.9353 -0.0004 32 1 2.6285 1.3985 -0.9274 33 1 1.3578 2.1320 0.0804 34 1 7.1981 -1.0449 1.8960 35 1 8.2623 -0.1184 0.8110 36 1 7.0402 0.7250 1.7924 37 1 0.8552 0.8757 3.7665 38 1 -0.3403 2.1448 3.4080 39 1 0.2639 1.0968 2.1023 40 1 2.4460 3.1238 6.0071 41 1 1.4293 1.8206 5.3460 42 1 3.1458 1.9299 4.8880 43 1 1.7371 5.7856 6.8506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520409102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:07 Heat of formation + Delta-G solvation = 204.316325 kcal Electronic energy + Delta-G solvation = -27309.038973 eV Core-core repulsion = 23622.024232 eV Total energy + Delta-G solvation = -3687.014741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.62894 -43.89089 -39.13251 -37.53870 -35.06940 -34.93689 -34.23157 -33.70892 -31.01966 -30.48909 -28.78510 -28.00132 -27.23647 -26.95523 -24.77540 -24.00535 -23.22177 -22.09913 -21.16055 -21.07593 -19.40999 -18.45357 -17.98026 -17.72552 -17.41165 -17.10418 -16.73446 -16.46429 -15.86324 -15.46828 -14.96798 -14.81282 -14.77712 -14.30175 -13.97363 -13.79881 -13.59617 -13.40706 -13.12980 -13.07182 -13.01903 -12.76847 -12.64569 -12.51234 -12.40059 -12.22126 -12.02763 -11.95086 -11.91938 -11.57941 -11.35988 -11.06337 -10.82075 -10.64997 -10.48077 -10.03410 -9.11950 -8.10526 -6.25382 -0.36254 0.66557 0.83818 1.20567 1.26237 1.39527 1.46744 1.48143 1.57776 1.84279 2.42389 2.77418 2.96940 3.19634 3.21942 3.35551 3.58457 3.68526 3.80160 3.92192 3.98738 4.26406 4.36484 4.51431 4.56980 4.64183 4.65829 4.75198 4.83370 4.86207 4.96481 4.99263 5.13615 5.21743 5.32507 5.39153 5.44167 5.46814 5.53580 5.59236 5.65143 5.75837 5.97753 6.24118 6.53027 6.83588 7.11194 7.43422 7.58726 8.95664 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.003783 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.601163 B = 7398.859450 C = 8426.735570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.220 4.220 3 C 0.123 3.877 4 N -0.467 5.467 5 C 0.226 3.774 6 C 0.057 3.943 7 N -0.370 5.370 8 H 0.459 0.541 9 N -0.058 5.058 10 N -0.279 5.279 11 C 0.037 3.963 12 C -0.070 4.070 13 N -0.269 5.269 14 N -0.342 5.342 15 C 0.389 3.611 16 N -0.455 5.455 17 C 0.036 3.964 18 C 0.239 3.761 19 H 0.003 0.997 20 C -0.165 4.165 21 C -0.523 4.523 22 H 0.073 0.927 23 C 0.014 3.986 24 N -0.918 5.918 25 Si 0.966 3.034 26 H -0.275 1.275 27 H -0.290 1.290 28 H -0.262 1.262 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.057 0.943 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 -11.536 -15.066 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.239 4.239 3 C 0.002 3.998 4 N -0.162 5.162 5 C -0.041 4.041 6 C -0.077 4.077 7 N -0.098 5.098 8 H 0.310 0.690 9 N -0.038 5.038 10 N -0.147 5.147 11 C -0.104 4.104 12 C -0.129 4.129 13 N -0.111 5.111 14 N -0.187 5.187 15 C 0.033 3.967 16 N -0.178 5.178 17 C -0.110 4.110 18 C 0.134 3.866 19 H 0.021 0.979 20 C -0.224 4.224 21 C -0.561 4.561 22 H 0.092 0.908 23 C -0.185 4.185 24 N -0.556 5.556 25 Si 0.791 3.209 26 H -0.200 1.200 27 H -0.216 1.216 28 H -0.186 1.186 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.562 -11.802 -15.445 19.446 hybrid contribution -2.036 1.022 0.902 2.450 sum -2.598 -10.780 -14.542 18.287 Atomic orbital electron populations 1.24355 0.94953 1.04449 0.92060 1.22987 0.97284 0.96413 1.07179 1.21439 0.92505 0.99981 0.85900 1.46478 1.13217 1.43953 1.12587 1.21034 0.84071 1.03754 0.95225 1.18496 0.94331 1.07894 0.86976 1.45420 1.15323 1.39068 1.10032 0.68982 1.78133 0.92995 1.13148 1.19508 1.74954 1.17018 1.19010 1.03668 1.22480 0.93088 0.98661 0.96158 1.20280 0.95776 1.04148 0.92664 1.74308 1.23214 1.13050 1.00526 1.74892 1.01117 1.18772 1.23955 1.23036 0.95509 0.94628 0.83543 1.59171 1.01349 1.19038 1.38269 1.22530 0.93463 0.93831 1.01201 1.18995 0.96031 0.89039 0.82573 0.97906 1.22404 0.99093 0.99016 1.01930 1.21303 0.98161 1.23917 1.12738 0.90847 1.25734 0.99137 0.97768 0.95894 1.70072 1.29290 1.37616 1.18658 0.85441 0.79244 0.77659 0.78574 1.20032 1.21572 1.18631 0.85433 0.86572 0.86666 0.87145 0.86084 0.89159 0.88746 0.90127 0.95916 0.89066 0.89247 0.92255 0.95505 0.92478 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 12.51 67.78 0.85 -0.45 16 2 C -0.22 -3.03 8.63 25.64 0.22 -2.81 16 3 C 0.12 2.20 5.54 85.63 0.47 2.68 16 4 N -0.47 -13.37 2.82 -521.07 -1.47 -14.84 16 5 C 0.23 6.86 7.88 136.01 1.07 7.94 16 6 C 0.06 1.44 7.11 40.47 0.29 1.73 16 7 N -0.37 -7.21 6.75 -48.54 -0.33 -7.54 16 8 H 0.46 5.84 5.88 -219.90 -1.29 4.55 16 9 N -0.06 -1.35 13.35 37.02 0.49 -0.86 16 10 N -0.28 -7.37 12.36 -47.85 -0.59 -7.96 16 11 C 0.04 0.95 7.30 42.01 0.31 1.25 16 12 C -0.07 -1.58 10.03 71.23 0.71 -0.87 16 13 N -0.27 -10.09 10.64 -51.01 -0.54 -10.64 16 14 N -0.34 -14.67 8.86 -57.99 -0.51 -15.19 16 15 C 0.39 14.78 6.65 260.10 1.73 16.51 16 16 N -0.45 -18.02 4.73 -710.99 -3.36 -21.38 16 17 C 0.04 1.19 8.70 127.69 1.11 2.30 16 18 C 0.24 11.90 2.12 44.17 0.09 11.99 16 19 H 0.00 0.17 8.11 -2.39 -0.02 0.15 16 20 C -0.16 -8.27 8.27 71.98 0.60 -7.67 16 21 C -0.52 -26.76 7.83 25.60 0.20 -26.56 16 22 H 0.07 3.54 6.80 -2.91 -0.02 3.52 16 23 C 0.01 0.75 5.30 84.66 0.45 1.20 16 24 N -0.92 -52.09 11.32 21.45 0.24 -51.85 16 25 Si 0.97 41.28 29.54 68.60 2.03 43.31 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 28 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 29 H 0.13 0.97 8.06 -2.91 -0.02 0.94 16 30 H 0.12 1.17 7.77 -2.91 -0.02 1.14 16 31 H 0.12 1.57 8.03 -2.91 -0.02 1.54 16 32 H 0.11 1.37 6.32 -2.39 -0.02 1.36 16 33 H 0.12 2.22 7.74 -2.38 -0.02 2.20 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.08 2.08 6.91 -2.39 -0.02 2.06 16 37 H 0.02 0.79 6.71 -2.39 -0.02 0.78 16 38 H 0.09 3.13 6.32 -2.39 -0.02 3.11 16 39 H 0.09 2.21 4.97 -2.39 -0.01 2.20 16 40 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 41 H 0.03 1.25 6.56 -2.39 -0.02 1.24 16 42 H 0.06 2.84 5.28 -2.39 -0.01 2.82 16 43 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -68.02 345.67 3.84 -64.18 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -0.23 Total: 15.52 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 8.10 Total: 7.24 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -6.07 Total: -130.25 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -68.02 3.84 -64.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520409102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.500 kcal (2) G-P(sol) polarization free energy of solvation -68.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 200.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds