Wall clock time and date at job start Tue Mar 31 2020 12:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46970 * 2 1 4 4 C 1.53002 * 109.47024 * 119.99553 * 2 1 3 5 5 C 1.53006 * 110.77931 * 298.21718 * 4 2 1 6 6 O 1.42901 * 109.46798 * 182.53786 * 5 4 2 7 7 C 1.55151 * 110.71983 * 174.97939 * 4 2 1 8 8 C 1.55130 * 101.48571 * 205.96909 * 7 4 2 9 9 N 1.47425 * 104.72162 * 37.29523 * 8 7 4 10 10 C 1.34782 * 125.65076 * 155.81864 * 9 8 7 11 11 O 1.21608 * 120.00004 * 175.93477 * 10 9 8 12 12 C 1.47435 * 119.99506 * 355.93108 * 10 9 8 13 13 C 1.39223 * 120.28011 * 36.60590 * 12 10 9 14 14 C 1.38227 * 120.09082 * 179.97438 * 13 12 10 15 15 C 1.38835 * 120.67316 * 0.02562 * 14 13 12 16 16 C 1.37592 * 120.57010 * 359.74245 * 15 14 13 17 17 C 1.40706 * 119.88512 * 0.49423 * 16 15 14 18 18 C 1.40892 * 120.33238 * 179.78729 * 17 16 15 19 19 H 1.07997 * 119.99868 * 214.61449 * 18 17 16 20 20 C 1.40275 * 119.99717 * 34.61784 * 18 17 16 21 21 N 1.30624 * 119.99980 * 355.64478 * 20 18 17 22 22 Si 1.86796 * 119.99815 * 175.37516 * 20 18 17 23 23 H 1.48499 * 109.47079 * 59.99596 * 22 20 18 24 24 H 1.48495 * 109.47101 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.47038 * 299.99741 * 22 20 18 26 26 C 1.47027 * 108.70407 * 335.55162 * 9 8 7 27 27 H 1.09001 * 109.47246 * 300.00258 * 1 2 3 28 28 H 1.09004 * 109.47171 * 60.00302 * 1 2 3 29 29 H 1.09003 * 109.46635 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47246 * 239.99742 * 2 1 3 31 31 H 1.09000 * 109.47139 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46927 * 299.99848 * 3 2 1 33 33 H 1.08992 * 109.47515 * 59.99663 * 3 2 1 34 34 H 1.08999 * 109.46824 * 302.53796 * 5 4 2 35 35 H 1.08996 * 109.47023 * 62.53726 * 5 4 2 36 36 H 0.96694 * 113.99849 * 180.02562 * 6 5 4 37 37 H 1.09003 * 111.00625 * 324.20631 * 7 4 2 38 38 H 1.08998 * 111.00806 * 88.02148 * 7 4 2 39 39 H 1.08994 * 110.49918 * 278.45496 * 8 7 4 40 40 H 1.09007 * 110.34483 * 156.05572 * 8 7 4 41 41 H 1.07991 * 119.95984 * 359.97231 * 13 12 10 42 42 H 1.07997 * 119.66226 * 180.02562 * 14 13 12 43 43 H 1.07993 * 119.70910 * 180.02562 * 15 14 13 44 44 H 1.08003 * 120.05960 * 180.25552 * 16 15 14 45 45 H 0.97000 * 120.00044 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.88029 * 120.70434 * 26 9 8 47 47 H 1.08998 * 109.88503 * 241.87189 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5833 0.0020 2.5180 6 8 2.1230 -0.6597 3.6638 7 6 3.5859 -0.8490 1.2167 8 6 3.8107 -2.1046 2.0996 9 7 2.6888 -3.0016 1.7678 10 6 2.6856 -4.3418 1.9113 11 8 1.6756 -4.9763 1.6743 12 6 3.9066 -5.0384 2.3557 13 6 4.7457 -4.4517 3.2991 14 6 5.8892 -5.1085 3.7133 15 6 6.2161 -6.3553 3.1973 16 6 5.4040 -6.9625 2.2672 17 6 4.2368 -6.3130 1.8251 18 6 3.4009 -6.9241 0.8697 19 1 2.8846 -6.3198 0.1386 20 6 3.2393 -8.3175 0.8682 21 7 3.9286 -9.0558 1.6965 22 14 2.0329 -9.1166 -0.3131 23 1 2.4242 -8.7992 -1.7100 24 1 2.0495 -10.5884 -0.1172 25 1 0.6664 -8.5972 -0.0516 26 6 1.5716 -2.1916 1.2604 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.9349 1.0334 2.4948 35 1 0.4947 -0.0097 2.5708 36 1 1.8735 -0.2546 4.5057 37 1 3.9431 -1.0131 0.2000 38 1 4.0599 0.0276 1.6583 39 1 3.7837 -1.8382 3.1561 40 1 4.7608 -2.5776 1.8509 41 1 4.5029 -3.4821 3.7079 42 1 6.5349 -4.6472 4.4458 43 1 7.1131 -6.8547 3.5323 44 1 5.6641 -7.9343 1.8743 45 1 3.8171 -10.0194 1.6952 46 1 1.3149 -2.5065 0.2489 47 1 0.7073 -2.3004 1.9154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548459898.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:36 Heat of formation + Delta-G solvation = -67.463573 kcal Electronic energy + Delta-G solvation = -27824.495638 eV Core-core repulsion = 24164.650478 eV Total energy + Delta-G solvation = -3659.845160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.20763 -38.30259 -36.58654 -35.82915 -34.86055 -33.56916 -30.65820 -29.88191 -29.56835 -28.59126 -27.22261 -25.93286 -25.19790 -23.50144 -21.85360 -21.25350 -20.71465 -18.67276 -18.51641 -17.63896 -17.10663 -16.24335 -15.73071 -15.28658 -15.04359 -14.61623 -14.56907 -14.14632 -14.00066 -13.62179 -13.26975 -13.06168 -12.87925 -12.66989 -12.56268 -12.34555 -12.31148 -11.91312 -11.83737 -11.73070 -11.63054 -11.45421 -11.06755 -11.00024 -10.89743 -10.72086 -10.64270 -10.45840 -10.36403 -10.18822 -9.86056 -9.82133 -9.59067 -9.18909 -8.50839 -7.80307 -7.45564 -7.25219 -6.62871 -4.33804 2.53000 2.92453 3.14215 3.18468 3.33942 3.81925 4.04980 4.13970 4.14160 4.38678 4.55286 4.74903 4.82292 5.01135 5.04512 5.15240 5.28939 5.37005 5.44716 5.46598 5.60953 5.66207 5.67672 5.72310 5.83172 5.91196 5.95738 5.97628 6.09900 6.13666 6.17469 6.20975 6.26684 6.32878 6.42656 6.55201 6.62756 7.07820 7.14005 7.21076 7.35393 7.57294 7.61694 7.75414 8.03009 8.07307 8.25738 8.46724 8.69329 8.90402 8.96151 9.42734 10.27000 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015317 B = 0.004312 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.567206 B = 6492.593177 C = 7737.150647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 C -0.149 4.149 4 C -0.068 4.068 5 C 0.089 3.911 6 O -0.557 6.557 7 C -0.118 4.118 8 C 0.110 3.890 9 N -0.620 5.620 10 C 0.589 3.411 11 O -0.540 6.540 12 C -0.245 4.245 13 C -0.067 4.067 14 C -0.244 4.244 15 C -0.098 4.098 16 C -0.153 4.153 17 C 0.143 3.857 18 C -0.422 4.422 19 H 0.079 0.921 20 C 0.072 3.928 21 N -0.803 5.803 22 Si 0.918 3.082 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.132 3.868 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.371 0.629 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.280 0.720 46 H 0.058 0.942 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 18.426 -0.908 18.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.097 4.097 3 C -0.206 4.206 4 C -0.069 4.069 5 C 0.012 3.988 6 O -0.362 6.362 7 C -0.156 4.156 8 C -0.013 4.013 9 N -0.356 5.356 10 C 0.383 3.617 11 O -0.417 6.417 12 C -0.249 4.249 13 C -0.085 4.085 14 C -0.263 4.263 15 C -0.117 4.117 16 C -0.173 4.173 17 C 0.139 3.861 18 C -0.451 4.451 19 H 0.097 0.903 20 C -0.144 4.144 21 N -0.429 5.429 22 Si 0.743 3.257 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.186 1.186 26 C 0.009 3.991 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.218 0.782 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.150 0.850 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.600 17.321 -1.434 17.573 hybrid contribution -0.819 0.054 0.132 0.831 sum -3.419 17.375 -1.301 17.756 Atomic orbital electron populations 1.21952 0.95052 1.02432 1.01635 1.21059 0.95883 0.96060 0.96710 1.21909 1.01395 0.95652 1.01633 1.21676 0.96649 0.94872 0.93703 1.22186 0.96604 0.94400 0.85625 1.86671 1.75820 1.57766 1.15959 1.22862 0.93821 0.98488 1.00446 1.22471 0.90725 0.88845 0.99222 1.48384 1.14946 1.05667 1.66593 1.18206 0.88676 0.78735 0.76078 1.90695 1.34648 1.64988 1.51385 1.19515 0.97740 1.00427 1.07256 1.20890 0.93823 0.97517 0.96308 1.20323 1.00506 0.98153 1.07354 1.20861 0.98348 0.94940 0.97503 1.21624 0.94187 1.01239 1.00222 1.17464 0.90313 0.88437 0.89899 1.19553 1.21624 0.91380 1.12592 0.90295 1.25947 0.95841 0.97409 0.95222 1.69653 1.34811 1.07001 1.31471 0.86190 0.81605 0.77416 0.80499 1.19007 1.20417 1.18633 1.21664 0.90626 0.88182 0.98674 0.92635 0.92576 0.92050 0.90258 0.92280 0.92643 0.92614 0.93403 0.93582 0.78213 0.90996 0.90586 0.90165 0.90813 0.88288 0.89224 0.89188 0.85027 0.90869 0.92378 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.69 37.16 0.32 -1.05 16 2 C -0.08 -0.75 2.08 -90.62 -0.19 -0.94 16 3 C -0.15 -1.13 8.65 37.16 0.32 -0.81 16 4 C -0.07 -0.80 0.34 -152.67 -0.05 -0.85 16 5 C 0.09 0.89 5.22 37.16 0.19 1.09 16 6 O -0.56 -6.38 10.41 -35.23 -0.37 -6.75 16 7 C -0.12 -1.46 5.03 -24.47 -0.12 -1.58 16 8 C 0.11 1.79 4.46 -2.41 -0.01 1.78 16 9 N -0.62 -12.27 3.33 -171.63 -0.57 -12.84 16 10 C 0.59 14.75 7.12 -12.51 -0.09 14.66 16 11 O -0.54 -15.36 15.41 5.27 0.08 -15.28 16 12 C -0.24 -6.31 5.55 -104.36 -0.58 -6.89 16 13 C -0.07 -1.51 7.91 -39.22 -0.31 -1.82 16 14 C -0.24 -5.41 10.03 -39.36 -0.39 -5.80 16 15 C -0.10 -2.29 10.01 -39.60 -0.40 -2.68 16 16 C -0.15 -4.04 8.67 -38.89 -0.34 -4.38 16 17 C 0.14 3.98 5.57 -106.54 -0.59 3.38 16 18 C -0.42 -12.04 7.53 -37.81 -0.28 -12.32 16 19 H 0.08 2.30 6.96 -52.49 -0.37 1.94 16 20 C 0.07 1.94 5.43 -17.30 -0.09 1.84 16 21 N -0.80 -21.51 10.60 55.56 0.59 -20.92 16 22 Si 0.92 20.61 29.56 -169.99 -5.03 15.58 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.26 -6.10 7.11 56.52 0.40 -5.69 16 26 C 0.13 2.17 4.80 -3.06 -0.01 2.16 16 27 H 0.05 0.45 6.64 -51.93 -0.34 0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.63 7.14 -51.93 -0.37 0.26 16 30 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.06 0.45 7.43 -51.93 -0.39 0.06 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.38 6.45 -51.93 -0.33 0.05 16 34 H 0.05 0.39 6.39 -51.93 -0.33 0.05 16 35 H 0.05 0.44 6.74 -51.93 -0.35 0.09 16 36 H 0.37 2.63 9.12 45.56 0.42 3.05 16 37 H 0.07 0.88 8.04 -51.93 -0.42 0.47 16 38 H 0.08 0.79 8.02 -51.93 -0.42 0.38 16 39 H 0.08 1.29 5.30 -51.93 -0.28 1.02 16 40 H 0.07 1.29 6.63 -51.92 -0.34 0.94 16 41 H 0.10 1.99 5.49 -52.49 -0.29 1.70 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.13 3.56 6.13 -52.48 -0.32 3.23 16 45 H 0.28 6.86 8.29 -40.82 -0.34 6.52 16 46 H 0.06 0.99 7.55 -51.93 -0.39 0.60 16 47 H 0.06 1.00 7.84 -51.93 -0.41 0.59 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.77 358.39 -8.70 -41.47 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.18 Total: 7.56 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -2.63 Total: -14.22 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.02 Total: -33.77 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.29 Total: -22.03 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.77 -8.70 -41.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548459898.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.998 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds