Wall clock time and date at job start Tue Mar 31 2020 12:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.31815 * 119.01385 * 90.00267 * 3 2 1 5 5 C 1.33013 * 120.91449 * 180.02562 * 4 3 2 6 6 N 1.38581 * 120.49316 * 180.02562 * 5 4 3 7 7 C 1.46498 * 120.00086 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47163 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47188 * 299.99781 * 8 7 6 10 10 C 1.53006 * 109.47217 * 59.99820 * 8 7 6 11 11 C 1.50700 * 109.47398 * 179.97438 * 8 7 6 12 12 H 1.07998 * 119.99800 * 359.97438 * 11 8 7 13 13 C 1.37874 * 120.00089 * 180.02562 * 11 8 7 14 14 N 1.31520 * 120.00029 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 119.99914 * 180.02562 * 13 11 8 16 16 H 1.48506 * 109.47084 * 89.99410 * 15 13 11 17 17 H 1.48504 * 109.46895 * 209.99473 * 15 13 11 18 18 H 1.48493 * 109.46885 * 329.99615 * 15 13 11 19 19 C 1.39464 * 119.01714 * 359.97438 * 5 4 3 20 20 C 1.39190 * 118.22592 * 0.02562 * 19 5 4 21 21 C 1.48417 * 120.50838 * 180.02562 * 20 19 5 22 22 N 1.34071 * 126.67544 * 0.02562 * 21 20 19 23 23 N 1.28987 * 107.26357 * 179.97438 * 22 21 20 24 24 N 1.28724 * 108.95149 * 359.97438 * 23 22 21 25 25 H 0.97003 * 125.34215 * 180.02562 * 24 23 22 26 26 N 1.28873 * 109.32164 * 359.75189 * 24 23 22 27 27 N 1.31622 * 119.02018 * 269.73915 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 29 29 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 32 32 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 33 33 H 0.97002 * 119.99806 * 359.97438 * 6 5 4 34 34 H 1.09008 * 109.46999 * 299.99333 * 7 6 5 35 35 H 1.08993 * 109.47866 * 59.99684 * 7 6 5 36 36 H 1.09002 * 109.47353 * 59.99935 * 9 8 7 37 37 H 1.09001 * 109.47555 * 179.97438 * 9 8 7 38 38 H 1.09001 * 109.47003 * 300.00085 * 9 8 7 39 39 H 1.09000 * 109.47447 * 59.99329 * 10 8 7 40 40 H 1.09001 * 109.47422 * 180.02562 * 10 8 7 41 41 H 1.09007 * 109.46718 * 300.00246 * 10 8 7 42 42 H 0.97000 * 119.99474 * 180.02562 * 14 13 11 43 43 H 1.07997 * 120.88779 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2456 2.0235 1.1527 5 6 2.6882 3.2771 1.1968 6 7 2.9099 3.9022 2.4136 7 6 3.3970 5.2833 2.4496 8 6 3.5554 5.7305 3.9043 9 6 2.2022 5.6484 4.6133 10 6 4.5584 4.8173 4.6122 11 6 4.0571 7.1510 3.9414 12 1 4.2447 7.6817 3.0196 13 6 4.2777 7.7728 5.1520 14 7 4.0499 7.1264 6.2745 15 14 4.8989 9.5339 5.1979 16 1 3.7431 10.4663 5.2114 17 1 5.7149 9.7392 6.4216 18 1 5.7325 9.7962 3.9974 19 6 2.9271 3.9527 0.0004 20 6 2.6890 3.2796 -1.1945 21 6 2.9266 3.9500 -2.4972 22 7 3.3701 5.2013 -2.6847 23 7 3.4397 5.3960 -3.9579 24 7 3.0614 4.3262 -4.5657 25 1 3.0218 4.2118 -5.5281 26 7 2.7490 3.4289 -3.6950 27 7 2.2502 2.0210 -1.1510 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.7418 3.4254 3.2415 34 1 4.3610 5.3419 1.9441 35 1 2.6824 5.9340 1.9457 36 1 1.8397 4.6208 4.5866 37 1 2.3151 5.9665 5.6498 38 1 1.4877 6.2990 4.1090 39 1 5.5225 4.8756 4.1071 40 1 4.6710 5.1355 5.6487 41 1 4.1959 3.7896 4.5854 42 1 4.2047 7.5641 7.1262 43 1 3.2863 4.9711 0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590915952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:44 Heat of formation + Delta-G solvation = 147.827171 kcal Electronic energy + Delta-G solvation = -26023.446357 eV Core-core repulsion = 22333.982063 eV Total energy + Delta-G solvation = -3689.464294 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.59630 -42.03628 -38.99659 -36.40435 -36.09747 -35.22833 -34.05908 -33.45039 -32.37236 -30.88486 -27.56980 -27.56522 -26.92773 -26.62519 -25.80696 -25.18309 -23.10662 -22.40520 -20.64706 -20.24172 -19.17348 -18.43294 -18.27784 -17.69096 -16.68149 -16.43864 -16.33742 -15.89139 -15.66393 -15.27197 -15.17703 -14.88171 -14.73954 -14.65062 -14.02264 -13.55031 -13.44854 -13.31441 -13.09099 -12.94725 -12.64319 -12.58345 -12.54702 -12.44761 -12.30400 -12.24272 -12.11073 -11.89557 -11.69320 -11.65673 -11.36814 -11.20818 -10.69492 -10.55031 -10.36464 -10.36345 -9.09433 -8.00296 -6.16296 -0.58326 0.06256 0.21886 1.17369 1.27272 1.45244 1.48664 1.56097 2.00830 2.20889 2.49108 2.80528 2.82712 3.24327 3.34111 3.59783 3.75016 4.00657 4.28245 4.31299 4.35875 4.38263 4.46185 4.50173 4.54927 4.70121 4.76095 4.93389 5.05735 5.08381 5.10430 5.19295 5.19629 5.21282 5.40436 5.46398 5.54332 5.66425 5.68903 5.69664 6.12906 6.18469 6.22871 6.42590 6.60425 6.89641 6.98884 7.22101 7.52044 8.98874 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.003521 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.918180 B = 7950.292875 C = 9934.692877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 C 0.360 3.640 4 N -0.583 5.583 5 C 0.440 3.560 6 N -0.687 5.687 7 C 0.146 3.854 8 C 0.054 3.946 9 C -0.122 4.122 10 C -0.122 4.122 11 C -0.524 4.524 12 H 0.055 0.945 13 C 0.027 3.973 14 N -0.902 5.902 15 Si 0.945 3.055 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.271 1.271 19 C -0.260 4.260 20 C 0.270 3.730 21 C 0.205 3.795 22 N -0.275 5.275 23 N -0.049 5.049 24 N -0.194 5.194 25 H 0.498 0.502 26 N -0.255 5.255 27 N -0.548 5.548 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.409 0.591 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.028 0.972 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.259 0.741 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 -11.588 -17.993 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C 0.091 3.909 4 N -0.310 5.310 5 C 0.194 3.806 6 N -0.317 5.317 7 C 0.022 3.978 8 C 0.053 3.947 9 C -0.180 4.180 10 C -0.180 4.180 11 C -0.562 4.562 12 H 0.073 0.927 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.772 3.228 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.196 1.196 19 C -0.292 4.292 20 C 0.126 3.874 21 C -0.076 4.076 22 N -0.149 5.149 23 N -0.044 5.044 24 N -0.046 5.046 25 H 0.358 0.642 26 N -0.109 5.109 27 N -0.269 5.269 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.247 0.753 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.568 -11.720 -18.176 22.104 hybrid contribution 0.564 1.631 0.417 1.775 sum -4.004 -10.089 -17.759 20.814 Atomic orbital electron populations 1.21642 0.92704 1.03636 1.01471 1.20492 0.97321 0.85795 1.05246 1.23508 0.88469 0.97628 0.81338 1.67835 1.22093 1.09318 1.31708 1.18590 0.86938 0.88032 0.87067 1.44936 1.67775 1.14637 1.04352 1.21631 0.97590 0.78817 0.99732 1.18316 0.93166 0.94209 0.88974 1.21683 0.96529 0.97159 1.02604 1.21685 0.97657 0.96030 1.02606 1.21274 1.44361 0.98103 0.92507 0.92720 1.25473 0.95527 1.00758 0.95532 1.69933 1.49199 1.37465 0.97482 0.85761 0.78286 0.81420 0.77359 1.20622 1.21331 1.19605 1.22005 1.11894 1.04042 0.91227 1.17736 0.92914 0.89627 0.87123 1.22941 1.03001 0.89726 0.91900 1.76171 1.17186 1.14685 1.06845 1.78906 1.14482 1.11162 0.99850 1.47913 1.38509 1.04858 1.13318 0.64207 1.75080 1.19029 1.18132 0.98632 1.68105 1.19481 1.08724 1.30608 0.93485 0.93129 0.88982 0.88174 0.87734 0.75255 0.92462 0.92463 0.95265 0.92071 0.95897 0.95878 0.92068 0.95266 0.93180 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.90 71.98 0.71 -1.63 16 2 C -0.05 -0.97 6.36 29.85 0.19 -0.78 16 3 C 0.36 10.19 6.90 138.79 0.96 11.15 16 4 N -0.58 -18.53 10.36 -185.60 -1.92 -20.45 16 5 C 0.44 14.75 7.71 133.10 1.03 15.77 16 6 N -0.69 -23.65 5.11 -344.68 -1.76 -25.41 16 7 C 0.15 5.56 3.75 86.38 0.32 5.88 16 8 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 9 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 10 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 11 C -0.52 -26.42 8.01 25.60 0.21 -26.22 16 12 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 13 C 0.03 1.38 5.15 84.65 0.44 1.81 16 14 N -0.90 -47.85 9.35 21.45 0.20 -47.65 16 15 Si 0.94 41.71 29.54 68.60 2.03 43.74 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.26 -8.47 9.05 22.79 0.21 -8.27 16 20 C 0.27 8.41 6.79 41.85 0.28 8.69 16 21 C 0.21 5.83 8.06 137.35 1.11 6.94 16 22 N -0.28 -7.85 12.30 -52.19 -0.64 -8.49 16 23 N -0.05 -1.09 13.47 37.02 0.50 -0.59 16 24 N -0.19 -3.04 7.90 37.02 0.29 -2.75 16 25 H 0.50 2.13 8.96 -347.53 -3.12 -0.98 16 26 N -0.25 -5.87 12.40 -52.14 -0.65 -6.52 16 27 N -0.55 -16.38 10.29 -177.21 -1.82 -18.20 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.41 13.99 6.29 -92.71 -0.58 13.41 16 34 H 0.06 2.19 7.97 -2.38 -0.02 2.17 16 35 H 0.06 2.19 7.97 -2.39 -0.02 2.17 16 36 H 0.03 1.13 6.86 -2.39 -0.02 1.11 16 37 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 41 H 0.03 1.13 6.86 -2.38 -0.02 1.11 16 42 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 43 H 0.15 4.95 6.76 -2.91 -0.02 4.93 16 Total: -1.00 -61.43 357.24 0.18 -61.25 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -2.63 Total: 18.99 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: 6.58 Total: 6.09 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -5.81 Total: -130.07 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -61.43 0.18 -61.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590915952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.082 kcal (2) G-P(sol) polarization free energy of solvation -61.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds