Wall clock time and date at job start Tue Mar 31 2020 11:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31872 * 119.93410 * 2 1 4 4 N 1.28287 * 122.58029 * 180.02562 * 3 2 1 5 5 C 1.32428 * 122.18565 * 359.69025 * 4 3 2 6 6 N 1.38860 * 120.24533 * 180.30309 * 5 4 3 7 7 C 1.46490 * 119.99862 * 0.31088 * 6 5 4 8 8 C 1.53009 * 109.47073 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.46635 * 299.99886 * 8 7 6 10 10 C 1.52994 * 109.47074 * 59.99562 * 8 7 6 11 11 C 1.50698 * 109.46979 * 179.97438 * 8 7 6 12 12 H 1.07992 * 120.00467 * 1.34486 * 11 8 7 13 13 C 1.37880 * 119.99709 * 181.34396 * 11 8 7 14 14 N 1.31516 * 120.00147 * 193.97264 * 13 11 8 15 15 Si 1.86802 * 120.00038 * 13.97710 * 13 11 8 16 16 H 1.48505 * 109.47051 * 84.54698 * 15 13 11 17 17 H 1.48496 * 109.47200 * 204.54563 * 15 13 11 18 18 H 1.48496 * 109.46992 * 324.55112 * 15 13 11 19 19 C 1.40479 * 119.50757 * 0.60784 * 5 4 3 20 20 C 1.48369 * 121.16024 * 179.69098 * 19 5 4 21 21 N 1.34082 * 126.67908 * 179.74494 * 20 19 5 22 22 N 1.28980 * 107.26451 * 179.73692 * 21 20 19 23 23 N 1.28730 * 108.95589 * 0.02562 * 22 21 20 24 24 H 0.97002 * 125.34008 * 180.02562 * 23 22 21 25 25 N 1.28869 * 109.32698 * 359.97438 * 23 22 21 26 26 C 1.38530 * 119.92912 * 180.02562 * 2 1 3 27 27 C 1.50697 * 121.04963 * 0.02562 * 26 2 1 28 28 H 1.08992 * 109.47389 * 269.98304 * 1 2 3 29 29 H 1.09002 * 109.46707 * 29.98236 * 1 2 3 30 30 H 1.09004 * 109.47258 * 149.97908 * 1 2 3 31 31 H 0.96998 * 119.99902 * 180.30677 * 6 5 4 32 32 H 1.09005 * 109.47496 * 299.99588 * 7 6 5 33 33 H 1.08995 * 109.47634 * 60.00198 * 7 6 5 34 34 H 1.09000 * 109.47352 * 69.36972 * 9 8 7 35 35 H 1.09004 * 109.47137 * 189.37176 * 9 8 7 36 36 H 1.09000 * 109.47308 * 309.36022 * 9 8 7 37 37 H 1.09007 * 109.47221 * 60.00078 * 10 8 7 38 38 H 1.08998 * 109.47447 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.47403 * 300.00322 * 10 8 7 40 40 H 0.96995 * 120.00305 * 179.97438 * 14 13 11 41 41 H 1.09000 * 109.47370 * 269.98250 * 27 26 2 42 42 H 1.09004 * 109.46739 * 29.97927 * 27 26 2 43 43 H 1.09002 * 109.47215 * 149.97513 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1651 1.1428 0.0000 4 7 3.4466 1.2020 -0.0005 5 6 4.2030 0.1150 0.0050 6 7 5.5871 0.2261 0.0106 7 6 6.2157 1.5493 0.0173 8 6 7.7376 1.3909 0.0219 9 6 8.1658 0.6165 1.2699 10 6 8.1743 0.6250 -1.2285 11 6 8.3842 2.7521 0.0281 12 1 7.7713 3.6410 0.0507 13 6 9.7583 2.8626 0.0050 14 7 10.3304 4.0133 0.2849 15 14 10.8077 1.3779 -0.4240 16 1 10.9247 1.2643 -1.9001 17 1 12.1596 1.5393 0.1687 18 1 10.1728 0.1498 0.1181 19 6 3.5947 -1.1512 -0.0013 20 6 4.4067 -2.3930 -0.0023 21 7 3.9450 -3.6518 -0.0033 22 7 4.9696 -4.4353 -0.0095 23 7 6.0413 -3.7221 -0.0119 24 1 6.9468 -4.0701 -0.0169 25 7 5.7227 -2.4735 -0.0078 26 6 2.1982 -1.2006 -0.0005 27 6 1.4671 -2.5183 -0.0017 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 6.1377 -0.5725 0.0102 32 1 5.9109 2.1009 -0.8721 33 1 5.9042 2.0951 0.9078 34 1 7.8368 -0.4192 1.1856 35 1 9.2516 0.6465 1.3614 36 1 7.7144 1.0705 2.1520 37 1 7.8691 1.1767 -2.1177 38 1 9.2584 0.5118 -1.2250 39 1 7.7066 -0.3595 -1.2334 40 1 11.2971 4.0909 0.2690 41 1 1.2907 -2.8369 1.0257 42 1 0.5126 -2.4038 -0.5155 43 1 2.0691 -3.2674 -0.5162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592447289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:23 Heat of formation + Delta-G solvation = 204.579191 kcal Electronic energy + Delta-G solvation = -27164.504633 eV Core-core repulsion = 23477.501291 eV Total energy + Delta-G solvation = -3687.003342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.72444 -40.99779 -37.67280 -35.53942 -35.22757 -34.28473 -32.96431 -31.94341 -31.11351 -28.62908 -27.56876 -26.42861 -25.72458 -25.14828 -24.76590 -24.50368 -22.00267 -21.68518 -19.57065 -19.13015 -17.43820 -17.40458 -17.31636 -16.13045 -16.04200 -15.45022 -15.11645 -14.67261 -14.35427 -14.04120 -13.70848 -13.25233 -13.17177 -13.04275 -12.93525 -12.74790 -12.69990 -12.51102 -12.23259 -12.08448 -11.93243 -11.72333 -11.64339 -11.47900 -11.29508 -10.75890 -10.46894 -10.39044 -10.26230 -10.15408 -9.89420 -9.49757 -9.44288 -9.14699 -8.72797 -8.49804 -7.63954 -6.16954 -4.13968 0.33084 0.91790 1.28695 1.95897 2.10323 3.19695 3.26513 3.34549 3.35691 3.41753 3.73663 3.81369 4.26046 4.32484 4.57078 4.72076 4.86301 4.95166 5.13503 5.17337 5.26560 5.35221 5.46054 5.57404 5.71496 5.71869 5.77889 5.92421 6.01816 6.03387 6.11688 6.14288 6.31425 6.34086 6.44192 6.51461 6.58541 6.66267 6.84100 7.14496 7.32232 7.39553 7.70083 7.79145 7.96972 8.43194 8.89027 9.05223 9.46855 10.96100 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.004379 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.232783 B = 6393.273086 C = 7958.419608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.013 4.013 3 N -0.176 5.176 4 N -0.297 5.297 5 C 0.376 3.624 6 N -0.687 5.687 7 C 0.143 3.857 8 C 0.029 3.971 9 C -0.142 4.142 10 C -0.148 4.148 11 C -0.511 4.511 12 H 0.079 0.921 13 C 0.076 3.924 14 N -0.890 5.890 15 Si 0.884 3.116 16 H -0.286 1.286 17 H -0.305 1.305 18 H -0.251 1.251 19 C -0.110 4.110 20 C 0.241 3.759 21 N -0.267 5.267 22 N -0.046 5.046 23 N -0.219 5.219 24 H 0.478 0.522 25 N -0.303 5.303 26 C 0.010 3.990 27 C -0.129 4.129 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.417 0.583 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.265 0.735 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 -17.433 -0.618 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.162 4.162 3 N -0.021 5.021 4 N -0.152 5.152 5 C 0.130 3.870 6 N -0.321 5.321 7 C 0.020 3.980 8 C 0.028 3.972 9 C -0.200 4.200 10 C -0.205 4.205 11 C -0.549 4.549 12 H 0.097 0.903 13 C -0.126 4.126 14 N -0.526 5.526 15 Si 0.717 3.283 16 H -0.214 1.214 17 H -0.234 1.234 18 H -0.177 1.177 19 C -0.129 4.129 20 C -0.039 4.039 21 N -0.140 5.140 22 N -0.041 5.041 23 N -0.066 5.066 24 H 0.332 0.668 25 N -0.156 5.156 26 C -0.004 4.004 27 C -0.186 4.186 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.262 0.738 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.050 -16.146 -0.597 21.412 hybrid contribution 1.772 -2.261 -0.279 2.886 sum -12.278 -18.407 -0.876 22.144 Atomic orbital electron populations 1.20530 0.87670 1.03460 1.02987 1.22283 0.98705 0.89014 1.06180 1.72563 1.01028 1.24738 1.03729 1.73225 0.98507 1.23100 1.20358 1.20154 0.88322 0.89188 0.89370 1.45645 1.00540 1.12121 1.73820 1.21672 0.93300 0.81036 1.01987 1.18717 0.90480 0.96587 0.91404 1.22297 1.01612 0.96686 0.99358 1.22363 0.99639 0.98087 1.00392 1.20702 0.91783 0.90422 1.52008 0.90301 1.24952 0.97789 0.95624 0.94252 1.69945 1.10525 1.25189 1.46967 0.87321 0.78331 0.84448 0.78249 1.21369 1.23372 1.17701 1.17628 0.91991 0.87417 1.15897 1.23189 0.86594 0.93172 1.00918 1.76071 1.19997 0.99268 1.18701 1.78891 0.89017 1.21935 1.14214 1.47647 1.12018 1.01268 1.45626 0.66771 1.74506 1.15844 1.02084 1.23165 1.20794 0.91148 0.97732 0.90684 1.21206 1.00577 0.92931 1.03911 0.90687 0.90417 0.90616 0.73786 0.91495 0.91407 0.96060 0.92501 0.93401 0.92747 0.94037 0.95290 0.92550 0.89651 0.90245 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 9.81 36.01 0.35 -0.40 16 2 C -0.01 -0.17 6.86 -82.47 -0.57 -0.73 16 3 N -0.18 -2.89 11.40 33.57 0.38 -2.51 16 4 N -0.30 -5.46 10.74 31.39 0.34 -5.12 16 5 C 0.38 6.50 7.58 -154.62 -1.17 5.33 16 6 N -0.69 -12.28 5.10 -60.08 -0.31 -12.58 16 7 C 0.14 2.89 4.53 -4.04 -0.02 2.88 16 8 C 0.03 0.65 0.50 -155.66 -0.08 0.57 16 9 C -0.14 -2.96 7.53 37.16 0.28 -2.68 16 10 C -0.15 -3.06 7.52 37.15 0.28 -2.78 16 11 C -0.51 -13.67 8.62 -34.44 -0.30 -13.97 16 12 H 0.08 2.30 7.99 -52.49 -0.42 1.89 16 13 C 0.08 2.12 5.32 -17.82 -0.09 2.02 16 14 N -0.89 -26.45 13.96 55.43 0.77 -25.68 16 15 Si 0.88 20.97 22.79 -169.99 -3.87 17.10 16 16 H -0.29 -6.77 7.10 56.52 0.40 -6.37 16 17 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 18 H -0.25 -5.41 4.65 56.52 0.26 -5.14 16 19 C -0.11 -1.62 5.94 -104.32 -0.62 -2.24 16 20 C 0.24 3.30 7.81 -156.28 -1.22 2.08 16 21 N -0.27 -3.27 9.36 32.15 0.30 -2.97 16 22 N -0.05 -0.49 13.47 60.35 0.81 0.32 16 23 N -0.22 -2.07 7.90 60.35 0.48 -1.59 16 24 H 0.48 2.40 8.96 -340.36 -3.05 -0.65 16 25 N -0.30 -3.94 9.49 32.16 0.31 -3.63 16 26 C 0.01 0.12 5.95 -103.96 -0.62 -0.50 16 27 C -0.13 -1.16 8.94 36.00 0.32 -0.84 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.47 6.04 -51.93 -0.31 0.16 16 31 H 0.42 7.05 3.03 -40.82 -0.12 6.93 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 35 H 0.06 1.24 4.30 -51.93 -0.22 1.02 16 36 H 0.05 0.99 8.12 -51.93 -0.42 0.56 16 37 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.90 2.25 -51.93 -0.12 0.78 16 39 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.52 6.07 -51.93 -0.31 0.21 16 43 H 0.10 0.99 5.41 -51.93 -0.28 0.71 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -32.22 333.29 -7.02 -39.24 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.80 Total: 3.67 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -3.45 Total: -11.27 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 3.08 Total: -53.76 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -3.87 Total: 17.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.22 -7.02 -39.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592447289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.819 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds