Wall clock time and date at job start Tue Mar 31 2020 11:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31872 * 119.93410 * 2 1 4 4 N 1.28287 * 122.58029 * 180.02562 * 3 2 1 5 5 C 1.32428 * 122.18565 * 359.69025 * 4 3 2 6 6 N 1.38860 * 120.24533 * 180.30309 * 5 4 3 7 7 C 1.46490 * 119.99862 * 0.31088 * 6 5 4 8 8 C 1.53009 * 109.47073 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.46635 * 299.99886 * 8 7 6 10 10 C 1.52994 * 109.47074 * 59.99562 * 8 7 6 11 11 C 1.50698 * 109.46979 * 179.97438 * 8 7 6 12 12 H 1.07992 * 120.00467 * 1.34486 * 11 8 7 13 13 C 1.37880 * 119.99709 * 181.34396 * 11 8 7 14 14 N 1.31516 * 120.00147 * 193.97264 * 13 11 8 15 15 Si 1.86802 * 120.00038 * 13.97710 * 13 11 8 16 16 H 1.48505 * 109.47051 * 84.54698 * 15 13 11 17 17 H 1.48496 * 109.47200 * 204.54563 * 15 13 11 18 18 H 1.48496 * 109.46992 * 324.55112 * 15 13 11 19 19 C 1.40479 * 119.50757 * 0.60784 * 5 4 3 20 20 C 1.48369 * 121.16024 * 179.69098 * 19 5 4 21 21 N 1.34082 * 126.67908 * 179.74494 * 20 19 5 22 22 N 1.28980 * 107.26451 * 179.73692 * 21 20 19 23 23 N 1.28730 * 108.95589 * 0.02562 * 22 21 20 24 24 H 0.97002 * 125.34008 * 180.02562 * 23 22 21 25 25 N 1.28869 * 109.32698 * 359.97438 * 23 22 21 26 26 C 1.38530 * 119.92912 * 180.02562 * 2 1 3 27 27 C 1.50697 * 121.04963 * 0.02562 * 26 2 1 28 28 H 1.08992 * 109.47389 * 269.98304 * 1 2 3 29 29 H 1.09002 * 109.46707 * 29.98236 * 1 2 3 30 30 H 1.09004 * 109.47258 * 149.97908 * 1 2 3 31 31 H 0.96998 * 119.99902 * 180.30677 * 6 5 4 32 32 H 1.09005 * 109.47496 * 299.99588 * 7 6 5 33 33 H 1.08995 * 109.47634 * 60.00198 * 7 6 5 34 34 H 1.09000 * 109.47352 * 69.36972 * 9 8 7 35 35 H 1.09004 * 109.47137 * 189.37176 * 9 8 7 36 36 H 1.09000 * 109.47308 * 309.36022 * 9 8 7 37 37 H 1.09007 * 109.47221 * 60.00078 * 10 8 7 38 38 H 1.08998 * 109.47447 * 180.02562 * 10 8 7 39 39 H 1.09001 * 109.47403 * 300.00322 * 10 8 7 40 40 H 0.96995 * 120.00305 * 179.97438 * 14 13 11 41 41 H 1.09000 * 109.47370 * 269.98250 * 27 26 2 42 42 H 1.09004 * 109.46739 * 29.97927 * 27 26 2 43 43 H 1.09002 * 109.47215 * 149.97513 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1651 1.1428 0.0000 4 7 3.4466 1.2020 -0.0005 5 6 4.2030 0.1150 0.0050 6 7 5.5871 0.2261 0.0106 7 6 6.2157 1.5493 0.0173 8 6 7.7376 1.3909 0.0219 9 6 8.1658 0.6165 1.2699 10 6 8.1743 0.6250 -1.2285 11 6 8.3842 2.7521 0.0281 12 1 7.7713 3.6410 0.0507 13 6 9.7583 2.8626 0.0050 14 7 10.3304 4.0133 0.2849 15 14 10.8077 1.3779 -0.4240 16 1 10.9247 1.2643 -1.9001 17 1 12.1596 1.5393 0.1687 18 1 10.1728 0.1498 0.1181 19 6 3.5947 -1.1512 -0.0013 20 6 4.4067 -2.3930 -0.0023 21 7 3.9450 -3.6518 -0.0033 22 7 4.9696 -4.4353 -0.0095 23 7 6.0413 -3.7221 -0.0119 24 1 6.9468 -4.0701 -0.0169 25 7 5.7227 -2.4735 -0.0078 26 6 2.1982 -1.2006 -0.0005 27 6 1.4671 -2.5183 -0.0017 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8898 -0.5142 31 1 6.1377 -0.5725 0.0102 32 1 5.9109 2.1009 -0.8721 33 1 5.9042 2.0951 0.9078 34 1 7.8368 -0.4192 1.1856 35 1 9.2516 0.6465 1.3614 36 1 7.7144 1.0705 2.1520 37 1 7.8691 1.1767 -2.1177 38 1 9.2584 0.5118 -1.2250 39 1 7.7066 -0.3595 -1.2334 40 1 11.2971 4.0909 0.2690 41 1 1.2907 -2.8369 1.0257 42 1 0.5126 -2.4038 -0.5155 43 1 2.0691 -3.2674 -0.5162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592447289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:23 Heat of formation + Delta-G solvation = 181.206428 kcal Electronic energy + Delta-G solvation = -27165.518152 eV Core-core repulsion = 23477.501291 eV Total energy + Delta-G solvation = -3688.016861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.166 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.61808 -42.13334 -39.24365 -36.64006 -36.50405 -35.20094 -34.32512 -33.52538 -32.35705 -29.60581 -28.63154 -28.10076 -27.37547 -26.53295 -26.05579 -25.48764 -23.03340 -22.83991 -20.94413 -20.33384 -18.77174 -18.58500 -18.30205 -17.99908 -17.15976 -16.83535 -16.59046 -15.93438 -15.47915 -15.39394 -14.89520 -14.76930 -14.46769 -14.27733 -14.13163 -13.96525 -13.82697 -13.81399 -13.61106 -13.37372 -13.12914 -12.68910 -12.54597 -12.44624 -12.40035 -12.32904 -12.10295 -12.04003 -11.88270 -11.67577 -11.34377 -11.10264 -10.64884 -10.58453 -10.44701 -10.41631 -8.95013 -8.31228 -6.32710 -0.71208 0.04456 0.17594 1.09149 1.22126 1.32346 1.33996 1.47316 2.13523 2.32356 2.41750 2.59987 2.83509 3.03973 3.20030 3.61258 3.75468 3.84642 3.97231 4.03753 4.26366 4.29209 4.33900 4.43360 4.44107 4.67559 4.76193 4.77418 4.80563 4.85793 4.91101 4.92406 4.98617 5.00364 5.14941 5.22377 5.30521 5.40758 5.49095 5.57769 5.63978 5.71888 5.98485 6.28860 6.59689 6.72690 7.00138 7.31578 7.89553 8.85820 Molecular weight = 317.17amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.004379 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.232783 B = 6393.273086 C = 7958.419608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.001 3.999 3 N -0.215 5.215 4 N -0.341 5.341 5 C 0.358 3.642 6 N -0.691 5.691 7 C 0.163 3.837 8 C 0.028 3.972 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.515 4.515 12 H 0.032 0.968 13 C 0.019 3.981 14 N -0.943 5.943 15 Si 0.942 3.058 16 H -0.281 1.281 17 H -0.312 1.312 18 H -0.208 1.208 19 C -0.112 4.112 20 C 0.227 3.773 21 N -0.267 5.267 22 N -0.040 5.040 23 N -0.193 5.193 24 H 0.495 0.505 25 N -0.318 5.318 26 C 0.016 3.984 27 C -0.125 4.125 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.422 0.578 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.061 0.939 40 H 0.265 0.735 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 -22.033 -0.878 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 N -0.057 5.057 4 N -0.194 5.194 5 C 0.112 3.888 6 N -0.329 5.329 7 C 0.039 3.961 8 C 0.027 3.973 9 C -0.195 4.195 10 C -0.201 4.201 11 C -0.553 4.553 12 H 0.050 0.950 13 C -0.178 4.178 14 N -0.582 5.582 15 Si 0.771 3.229 16 H -0.208 1.208 17 H -0.241 1.241 18 H -0.132 1.132 19 C -0.131 4.131 20 C -0.052 4.052 21 N -0.140 5.140 22 N -0.035 5.035 23 N -0.044 5.044 24 H 0.355 0.645 25 N -0.172 5.172 26 C 0.002 3.998 27 C -0.182 4.182 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.268 0.732 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.128 0.872 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.685 -20.769 -0.858 26.040 hybrid contribution 2.037 -0.870 -0.178 2.222 sum -13.648 -21.638 -1.036 25.604 Atomic orbital electron populations 1.20752 0.84244 1.05090 1.04604 1.23073 1.00801 0.88294 1.02818 1.72502 1.00460 1.26742 1.05970 1.73096 0.99704 1.24540 1.22013 1.20259 0.87906 0.90182 0.90427 1.45245 1.00988 1.10602 1.76055 1.21128 0.92444 0.82456 1.00062 1.18648 0.91124 0.94365 0.93194 1.22191 1.00924 0.98322 0.98070 1.22270 0.99485 0.99434 0.98925 1.20964 0.91761 0.91572 1.51033 0.94978 1.25813 0.99191 0.98772 0.94055 1.70102 1.10831 1.28071 1.49234 0.86369 0.75988 0.82351 0.78204 1.20834 1.24146 1.13215 1.17803 0.93158 0.86998 1.15119 1.23026 0.86839 0.93229 1.02133 1.76086 1.20445 0.98585 1.18840 1.78854 0.89112 1.21589 1.13895 1.47673 1.12782 1.00179 1.43782 0.64536 1.74399 1.15801 1.03533 1.23446 1.21282 0.90466 0.99262 0.88774 1.21329 1.01317 0.90361 1.05160 0.88886 0.90406 0.87392 0.73225 0.93460 0.93651 0.92673 0.93233 0.94141 0.93419 0.94330 0.91976 0.92618 0.88043 0.87157 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.81 71.24 0.70 -0.52 16 2 C 0.00 0.03 6.86 42.62 0.29 0.33 16 3 N -0.22 -7.11 11.40 -47.70 -0.54 -7.66 16 4 N -0.34 -12.97 10.74 -54.60 -0.59 -13.55 16 5 C 0.36 12.43 7.58 133.43 1.01 13.44 16 6 N -0.69 -24.60 5.10 -343.99 -1.75 -26.35 16 7 C 0.16 6.89 4.53 86.38 0.39 7.28 16 8 C 0.03 1.23 0.50 -52.93 -0.03 1.21 16 9 C -0.14 -5.53 7.53 71.98 0.54 -4.99 16 10 C -0.14 -5.72 7.52 71.98 0.54 -5.18 16 11 C -0.52 -28.80 8.62 25.60 0.22 -28.58 16 12 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 13 C 0.02 1.10 5.32 84.66 0.45 1.55 16 14 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 15 Si 0.94 42.84 22.79 68.60 1.56 44.40 16 16 H -0.28 -12.53 7.10 99.48 0.71 -11.82 16 17 H -0.31 -14.52 7.11 99.48 0.71 -13.82 16 18 H -0.21 -8.05 4.65 99.48 0.46 -7.59 16 19 C -0.11 -3.15 5.94 -19.67 -0.12 -3.26 16 20 C 0.23 5.66 7.81 137.33 1.07 6.74 16 21 N -0.27 -5.69 9.36 -52.21 -0.49 -6.18 16 22 N -0.04 -0.71 13.47 37.02 0.50 -0.22 16 23 N -0.19 -2.96 7.90 37.02 0.29 -2.67 16 24 H 0.50 3.01 8.96 -347.53 -3.12 -0.10 16 25 N -0.32 -7.32 9.49 -52.16 -0.49 -7.82 16 26 C 0.02 0.35 5.95 -19.43 -0.12 0.24 16 27 C -0.13 -1.72 8.94 71.23 0.64 -1.08 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 0.80 6.04 -2.39 -0.01 0.78 16 31 H 0.42 13.56 3.03 -92.71 -0.28 13.28 16 32 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 1.83 7.13 -2.39 -0.02 1.81 16 35 H 0.05 2.05 4.30 -2.38 -0.01 2.03 16 36 H 0.04 1.65 8.12 -2.39 -0.02 1.63 16 37 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.04 1.55 2.25 -2.39 -0.01 1.55 16 39 H 0.06 2.04 6.86 -2.39 -0.02 2.02 16 40 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 0.85 6.07 -2.39 -0.01 0.84 16 43 H 0.09 1.51 5.41 -2.39 -0.01 1.50 16 Total: -1.00 -74.89 333.29 1.85 -73.04 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -2.54 Total: 18.14 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.60 Total: -12.83 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -2.78 Total: -122.75 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.56 Total: 44.40 kcal Total: -74.89 1.85 -73.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592447289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 254.249 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds